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Adaptive Response of the Cells to Environmental Changes-Regulation of the Phosphate Regulon and the Function of Their Gene Products in Escherichia col

Research Project

Project/Area Number 63440087
Research Category

Grant-in-Aid for General Scientific Research (A)

Allocation TypeSingle-year Grants
Research Field 分子遺伝学・分子生理学
Research InstitutionOsaka University

Principal Investigator

NAKATA Atsuo  Osaka University Research Institute for Microbial Diseases Professor, 微生物病研究所, 教授 (80029769)

Co-Investigator(Kenkyū-buntansha) AMEMURA Mitsuko  the same above Techinical Instructor, 微生物病研究所, 教務職員 (80159467)
MAKINO Kozo  the same above Instructor, 微生物病研究所, 助手 (20181620)
SHINAGAWA Hideo  the same above Associate Professor, 微生物病研究所, 助教授 (40029799)
Project Period (FY) 1988 – 1991
Project Status Completed (Fiscal Year 1991)
Budget Amount *help
¥26,500,000 (Direct Cost: ¥26,500,000)
Fiscal Year 1991: ¥6,100,000 (Direct Cost: ¥6,100,000)
Fiscal Year 1990: ¥5,000,000 (Direct Cost: ¥5,000,000)
Fiscal Year 1989: ¥7,500,000 (Direct Cost: ¥7,500,000)
Fiscal Year 1988: ¥7,900,000 (Direct Cost: ¥7,900,000)
KeywordsEscherichia Coli / Phosphate Regulon / Phosphate-starvation / Signal transduction / Phosphorylation / Cross Talk / cAMP / CRP / Phosphonate / 大腸菌 / 遺伝子発現制御 / 感応レギュレ-タ- / 二因子制御系 / ヒスチジン・蛋白・キナ-ゼ / 転写活性化因子 / cross talk / in vitro転写系 / シグナル伝達 / 遺伝子発現制御機構 / リン酸ボックス / プロモーター活性 / 転写アクチベーター / シグナル・トランスダクション
Research Abstract

The aim of this research is to elucidate the molecular mechanisms of Escherichia coli to sense the concentrations of inorganic phosphate in the medium, and transduce the signal to the regulator protein to regulate the expression of the genes in the phosphate (pho) regulon, which is required for the cell to adapt its physiology to phosphate starvation.
It had been known that the expression of the genes in the pho regulon is dependent on the function of the phoB gene, and the activation of the phoB gene is dependent on the function of phoR or, in the absence of the phoR function, phoM.
(1) To study the functions of phoB and phoR, we purified PhoR and PhoB proteins and demonstrated in vitro that PhoR mediates phosphorylation of PhoB, and the phosphorylated PhoB is the active form that activates the initiation of transcription of the pho genes by binding to the consensus sequences called the pho box, located in the regulatory regions of the pho genes. We also demonstrated that PhoM proten, l … More ike PhoR, mediates the phosphorylation of PhoB as well as PhoM-Orf2, providing the mechanism to explain the so-called "cross talk" between the two regulatory systems. These experiments, together with a few similar experiments done simultaneously by other research groups in the world, established the importance of protein phosphorylation for the signal transduction in prokaryotes. Based on the genetic and biochemical studies, we proposed that excess level of phosphate in the medium is sensed by the products of the pstS, C, A, B genes located in the periphery of the membrane, and the signal is transduced to PhoR protein by PhoU protein, which activates the phosphatase activity of PhoR, and PhoR, in turn, inactivates PhoB by dephosphorylation.
(2) We found that the ugpBACQ operon, which is involved in the uptake of sn-glycerol-3-phosphate, is regulated by two promoters, the pho-promoter, induced by phosphate-starvation and the cAMP-CRP regulated promoter, induced by carbon-starvation.
(3) By comparing the DNA sequence of the phn operon of E. coli K-12 and E. coli B strains, we discovered that the inability of E. coli K-12 strain to utilize phosphonate compounds is due to the insertion of an extra 8-bp repeated seqeunce in the phnE gene. Less

Report

(5 results)
  • 1991 Annual Research Report   Final Research Report Summary
  • 1990 Annual Research Report
  • 1989 Annual Research Report
  • 1988 Annual Research Report
  • Research Products

    (46 results)

All Other

All Publications (46 results)

  • [Publications] Makino,K.,H.Shinagawa,M.Amemura,S.Kimura,A.Nakata,and A.Ishihama.: "Regulation of the phosphate regulon of Escherichia coli:activation of pstS transcription by PhoB protein in vitro." J.Mol.Biol.203. 85-95 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kasahara,M.,K.Makino,M.Amemura,and A.Nakata.: "Nucleotide sequence of ugpQ gene encoding glycerophosphoryl diester phosphodiesterase of Escherichia coli K-12." Nucleic Acids Res.17. 2854 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Makino,K.,H.Shinagawa,M.Amemura,T.Kawamoto,M.Yamada,and A.Nakata.: "Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins." J.Mol.Biol.210. 551-559 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Nakata,A.,M.Amemura,and K.Makino.: "Unusual nucleotide arrangement with repeated sequences in the Escherichia coli K-12 chromosome." J.Bacteriol.171. 3553-3556 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Yamada,M.,K.Makino,M.Amemura,H.Shinagawa,and A.Nakata.: "Regulation of the phosphate regulon of Escherichia coli:analysis of mutant phoB and phoR genes causing different phenotypes." J.Nacteriol.171. 560-5606 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Lee,T.-Y.,K.Makino,H.Shinagawa,M.Amemura,and A.Nakata.: "Phosphate regulon in members of the family Enterobacteriaceae:comparison of the phoB-phoR operons of Escherichia coli,Shigella dysenteriae,and Klebsiella pneumoniae." J.Bacteriol.171. 6593-6599 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kimura,S.,K.Makino,H.Shinagawa,M.Amemura,and A.Nakata.: "Regulation of the phosphate regulon of Escherichia coli:characterization of the promoter of the pstS gene." Mol.Gen.Genet.215. 374-380 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Yamada,M.,K.Makino,H.Shinagawa,and A.Nakata.: "Regulation of the phosphate regulon of Escherichia coli:properties of phoR deletion mutants and subcellular localization of PhoR protein." Mol.Gen.Genet.220. 366-372 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Lee,T,-Y.,K.Makino,H.Shinagawa,and A.Nakata.: "Overproduction of acetate kinase activates the phosphate regulon in the absence of the phoR and phoM functions in Escherchia coli." J.Bacteriol. 172. 2245-2249 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Amemura,M.,K.Makino,H.Shinagawa,and A.Nakata.: "Cross talk to the phosphate regulon of Echerichia coli by PhoM protein:PhoM is a histidin protein kinase and catalyzes phosphorylation of PhoB and PhoM-open reading frame2." J.Bacteriol. 172. 6300-6307 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kasahara,M.,K.Makino,M.Amemura,A.Nakata,and H.Shinagawa.: "Dual regulation of the ugp operon by phosphate and carbon starvation at two interspaced promoters." J.Bacteriol. 173. 549-558 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Makino,K.,S.-K.Kim,H.Shinagawa,M.Amemura,and A.Nakate.: "Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12." J.Bacteriol. 173. 2665-2672 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Makino, K., H. Shinagawa, M. Amemura, S. Kimura, A. Nakata, and A. Ishihama: "Regulation of the phosphate regulon of Escherichia coli : activation of patS transcription by PhoB protein in vitro." J. Mol, Biol.203. 85-95 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kasahara, M., K. Makino, M. Amemura, and A. Nakata: "Nucleotide sequence of ugpQ gene encoding glycerophosphoryl diester phosphodiesterase of Escherichia coli K-12." Nucleic acids Res.17. 2854 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Makino, K., H. Shinagawa, M. Amemura, T. Kawamoto, M. Yamada, and A. Nakata: "Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins." J. Mol. Biol.210. 551-559 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Nakata, A., M. Amemura, and K. Makino: "Unusual nucleotide arrangement with repeated sequences in the escherichia coli K-12 chromosome." J. Bacteriol.171. 3553-3556 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Yamada, M., K. Makino, M. Amemura, H. Shinagawa, and A. Nakata: "Regulation of the phosphate regulon of Escherichia coli ; analysis of mutant" phoB and phoR genes causing different phenotypes. J. Bacteriol.171. 5601-5606 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Lee, T., Y., K. Makino, H. Shinagawa, M. Amemura, and A. Nakata: "Phosphate regulon in members of the family Enterobacteriaceae : comparison of the phoB-phoR operons of Escherichia coli, Shigella dysenteriae, and Klebsiella pneumoniae." J. Bacteriol.171. 6593-6599 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kimura, S., K. Makino, H. Shinagawa, M. Amemura, and A. Nakata: "Regulation of the phosphate regulon of Escherichia coli : characterization of the promoter of the pstS gene." Mol. Gen. Genet.215. 374-380 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Yamada, M., K. Makino, H. Shinagawa, and A. Nakata: "Regulation of the phosphate regulon of Escherichia coli : properties on phoR deletion mutants and subcellular localization of PhoR protein." Mol. Gen. Genet.220. 366-372 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Lee. T. -Y., K. Makino, H. Shinagawa, and A. Nakata: "Overproduction of acetate kinase activates the phosphate regulon in the absence of the phoR and phoM functions in Escherchia coli." J. Bacteriol.172. 2245-2249 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Amemura, M., K. Makino, H. Shinagawa, and A. Nakata: "Cross talk to the phosphate regulon of Escherichia coli by PhoM protein : PhoM is a histidin protein kinase and catalyzes phosphorylation of PhoB and PhoM-open reading frame 2." J. Bacteriol.172. 6300-6307 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kasahara, M., K. Makino, M. Amemura, A. Nakata, and H. Shinagawa: "Dual regulation of the ugp operon by phosphate and carbon starvation at two interspaced promoters." J. Bacteriol.173. 549-558 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Makino, K., S. -K. Kim, H. Shinagawa, M. Amemura, and A. Nakata: "Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12." J. Bacteriol.173. 2665-2672 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kasahara, M., A. Nakata, and H. Shinagawa: "Molecular analysis of Salmonella typhimurium phoN gene, which encodes nonspecific acid phosphatase." J. Bacteriol.17o. 6760-6765 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kasahara, M., A. Nakata, and H. Shinagawa: "Molecular analysis of the Escherichia coli phoP-phoQ operon." J. Bacteriol.174. 492-498 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Kasahara,M.,,K.Makino,,M.Amemura,,A.Nakata,,and H.Shinagawa: "Dual regulation of the ugp operon by phosphate and carbon starvation at two iternspaced promoter." Journal of Bacteriology. 173. 549-558 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Makino,K.,,S.ーK.Kim,,H.Shinagawa,,M.Amemura,,and A.Nakata: "Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia colikー12" Journal of Bacteriology. 173. 2662-2672 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Kasahara,M.,,A.Nakata,,and H.Shinawaga: "Molecular analysis of the Salmonella typhimurium phoN gene,which encodes nonspecific acid phosphatase." Journal of Bactriology. 173. 6760-6765 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Kasahara,M.,,A.Nakata,,and H.Shinagawa: "Molecular analysis of the Escherichia coli phoPーphoQ operon." Journal of Bacteriology. 174. 486-491 (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Yamada,M.,K.Makino,H.Shinagawa,and A.Nakata.: "Regulation of the phosphate regulon of Escherichia coli:properties of phoR deletion mutants and subcellular localization of PhoR protein." Mol.Gen.Genet.220. 366-372 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Lee,T.ーY.,K.Makino,H.Shinagawa,and A.Nakata.: "Overーproduction of acetate kinase activates the phosphate regulon in the absence of the phoR and phoM functions in Escherichia coli." J.Bacteriol.172. 2245-2249 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Amemura,M.,K.Maino,H.Shinagawa,and A.Nakata.: "Cross talk to the phosphate regulon of Escherichia coli by PhoM protein:PhoM is a histidine protein kinase and catalyzes phosphorylation of PhoB and PhoMーOpen reading frame 2." J.Bacteriol.172. 6300-6307 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Kasahara,M.,K.Makino,M.Amemura,A.Nakata,and H.Shinagawa.: "Dual regulation of the ugp operon by phosphate and carbon starvation at two interspaced promoter." J.Bacteriol.(1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Kimura,S.,K.Makino,H.Shinagwa,M.Amemura,and A.Nakata.: "Regulation of the phosphate regulon of Escherichia coli:characterization of the promoter of the psts gene." Mol.Gen.Genet.215. 374-380 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Kasahar,M.,K.Makino,M.Amemura,and A.Nakata.: "Nucleotide sequence of the ugpQ gene encoding glycerophosphoryl diester phosphodiesterase of Escherichia coli K-12." Nucleic Acids Res.17. 2854 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Yamad,M.,K.Makino,M.Amemura,H.Shinagawa,and A.Nakata.: "Regulation of the phosphate regulon of Escherichia coli:analysis of mutant phoB and phoR genes causing different phenotypes." J.Bacteriol.171. 5601-5606 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Makino,K.,H.Shinagawa,M.Ameura,T.Kawamoto,M.Yamada,and A.Nakata.: "Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins." J.Mol.Biol.210. 551-559 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Lee,T.-Y.,K.Makino,H.Shinagawa,M.Amemura,and A.Nakata.: "Phosphate regulation in the Enterobacteriaceae:comparison of the phoB-phoR operons of Escherichina coli,Shigella dysenteriae,and Klebsiella pneumoniae." J.Bacteriol.171. 6593-6599 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Yamada,M.,K.Makino,H.Shinagawa,and A.Nakata.: "Regulation of the phosphate regulon of Escherichia coli:properties of phoR deletion mutants and subcellular localization of PhoR protein." Mol.Gen.Genet.(1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] 中田篤男:第4章リン酸レギュロンの制御系とその機能p.71〜94: "分子生物学の進歩4分子生物学会編 遺伝子の発現と制御I由良隆 飯野徹雄 石浜明 深沢俊夫 編集" 丸善株式会社, 296 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Makino,k.,: J.Mol.Biol.203. 85-95 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Kimura.S.,: Mol.Gen.Genet.(1989)

    • Related Report
      1988 Annual Research Report
  • [Publications] Shinagawa,H.,: Proc.Natl.Acad.Sci.USA. 85. 1906-1810 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Shinagawa,H.,: J.Bacteriol.170. 4322-4329 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Iwasaki,H.,: "Activation of UmuD protein for SOS mutagenesis by proteolytic processing mediated by RecA^*.Mechanisms and Conseqences of DNA Damage Processing" Alan R.Liss,Inc., 461-469 (1988)

    • Related Report
      1988 Annual Research Report

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Published: 1988-04-01   Modified: 2016-04-21  

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