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Phylogenetic Analysis of Coryneform and Related Bacteria Based on 5s rRNA Base Sequences

Research Project

Project/Area Number 63480057
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 発酵・醸造
Research InstitutionThe University of Tokyo

Principal Investigator

SUGIYAMA Junta (1989-1990)  Institute of Applied Microbiology, The University of Tokyo, Professor, 応用微生物研究所, 教授 (80142256)

駒形 和男 (1988)  東京大学, 応用微生物研究所, 教授 (70013331)

Co-Investigator(Kenkyū-buntansha) SUZUKI Ken-ichiro  Japan Collection of Microorganisms, RIKEN (The Institute of Physical and Chemica, ライフサイエンス培養生物部, 研究員
杉山 純多  東京大学, 応用微生物研究所, 助教授 (80142256)
Project Period (FY) 1988 – 1990
Project Status Completed (Fiscal Year 1990)
Budget Amount *help
¥5,500,000 (Direct Cost: ¥5,500,000)
Fiscal Year 1990: ¥1,600,000 (Direct Cost: ¥1,600,000)
Fiscal Year 1989: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 1988: ¥2,800,000 (Direct Cost: ¥2,800,000)
Keywordscoryneform bacteria / nocardioform bacteria / Mycobacterium / phylogeny / molecular evolution / chemotaxonomy / 系統分類学 / 化学分類学 / 5S rRNA / Rhodococcus / Arthrobacter / Tsukamurella / 5S rRNA塩基配列
Research Abstract

The generic concept of coryneform bacteria ia mainly based on their chemotaxonomic characteristics such as peptidoglycan structure of cell wall, menaquinone systems, cellular fatty acid composition and DNA base composition, To evaluate the taxonomic system mentioned above, phyligenetic analysis with base sequence of 5s rRNA was carried ou. According to the method of Hori and Osawa, the sequences of eleven strains of coryneform and the related organisms are compared with the previous study by Park et al. Although the genera Phodococcus, Nocardia, and Mycobacterium share the same cell wall structucture containing meso-diaminopimelic acid, arabinogalactan, and mycolic acids with the genus Corynebacterium, the former genera were included in the subgroup proposed by Pard et al. which comprised coryneform bacteria with non-mesodiaminopimelic acid peptidoglycan. Corynebacterium and Brevibacterium constructed subgroups independently.
It has been a problem of the taxonomy of coryneform bacteria that the authentic strains are not sufficient. We collected unidentified coryneform bacteria and chemotaxonomically characterized. It was revealed that they included rarely isolated coryneform bacteria such as Tsukamurera and the Arthrobacter nicotianae group. These strains are expected to contribute to the improvement of the taxonomy of coryneform bacteria.

Report

(4 results)
  • 1990 Annual Research Report   Final Research Report Summary
  • 1989 Annual Research Report
  • 1988 Annual Research Report
  • Research Products

    (10 results)

All Other

All Publications (10 results)

  • [Publications] J.S.Park,H.Horiand K.Komagata: "Nucleotede sequensces of 5S ribosomal RNAs Planococcus citreus, Planoccus kocurii and Sporosarcina ureae" Nucleic Acid Research. 16. 10358- (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] F.Yanagida,H.Hori,K.Suzuki,M.Kosaki and K.Komagata: "Nucleotide sequence of 5S ribosomal RNAs from sporeーforming lactic acid bacteria and Lactobacillus plantarum" Nucleic Acid Research. 16. 10938 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] F.Yanagita,Y.Niimura,E.Koh,K.Suzuki,M.Kozaki andK.Komagata: "Nucleotide sequence of 5S ribosomal RNAs of ′Amphibacillus xylanus′ and Clostridium carnis" Nucleic Acid Research. 17. 443- (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y.H.Park,H.Hori,K.Suzuki,J.Sugiyama and K.Komagata: "Further phylogenetic analysis of some coryneform and nocardioform bacteria by 5S rRNA" Journal of General and Applied Microbiology,in preparation.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] J. S. Park, H. Hori and K. Komagata.: "Nucleotide sequences of 5S ribosomal RNAs of Planococcus citreus, Planococcus kocurii and Sporosarcina ureae" Nucleic Acid Research. 16 :. 10358 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] F. Yanagida, H. Hori, K. Suzuki, M. Kozaki and K. Komagata: "Nucleotide sequence of 5S ribosomal RNAs from sporeforming lactic acid bacteria and Lactobacillus plantarum" Nucleic Acid Research. 16 :. 10938 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] F. Yanagida, Y. Niimura, E. Koh, K. Suzuki, M. Kozaki and K. Komagata: "Nucleotide sequence of 5S ribosomal RNAs of 'Amphibacterium xylianus' and Clostridium carnis" Nucleic Acid Research. 17 :. 443 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y. H. Park, H. Hori, K. Suzuki, J. Sugiyama and K. Komagata: "Further phylogenetic analysis of some coryneform and nocardioform bacteria by 5S rRNA" Journal of General and Applied Microbiology,.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Jin-sook,Park: Nucleic Acids Research. 16. 10358 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Jin-sook,Park: J.Gen.Appl.Microbiol.

    • Related Report
      1988 Annual Research Report

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Published: 1988-04-01   Modified: 2016-04-21  

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