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Protein Structure and Catalytic Mechanism of Amino Acid Racemase

Research Project

Project/Area Number 63580152
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field 代謝生物化学
Research InstitutionOsaka University (1989)
Kyoto University (1988)

Principal Investigator

TANIZAWA Katsuyuki  Osaka University, Institute of Scientific and Industrial Research, Associate Professor, 産業科学研究所, 助教授 (20133134)

Co-Investigator(Kenkyū-buntansha) ESAKI Nobuyoshi  Kyoto University, Institute for Chemical Research, Associate Professor (50135597)
Project Period (FY) 1988 – 1989
Project Status Completed (Fiscal Year 1989)
Budget Amount *help
¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 1989: ¥400,000 (Direct Cost: ¥400,000)
Fiscal Year 1988: ¥1,300,000 (Direct Cost: ¥1,300,000)
KeywordsAlanine racemase / Glutamate racemase / Racemization / Pyridoxal enzyme / Thermostable enzyme / Domain structure / ラセマーゼ / アラニン / グルタミン酸 / タンパク質構造 / 全一次構造
Research Abstract

1. The following results have been obtained by the research on glutamate racemase. (1) Glutamate racemase has been purified from cell extracts of a lactic acid bacterium, Pediococcus pentosaceus, and its enzymological properties and reaction mechanism have been analyzed. The enzyme catalyzed an internal proton transfer under single turnover conditions with a deuterium-labeled substrate or deuterium oxide as the solvent. (2) The gene coding for glutamate racemase has been cloned into Escherichia coli. An efficient method was established for purification of the enzyme from the clone cell extracts. (3) A convenient procedure has been developed for the enantioselective synthesis of various D-amino acids by a multi-enzyme system including glutamate racemase and D-amino acid transaminase.
2. The following results have been obtained by the research on alanine racemase. (1) The structural gene coding for thermostable alanine racemase of a mesothermophilic bacterium, Bacillus stearothermophilus, … More has been cloned and expressed in E. coli. The enzyme was purified to homogeneity from cell extracts of E. coli carrying a plasmid designated pICR4. The alanine racemase gene sequenced was found to contain an open reading frame of 1158 nucleotides. The molecular weight of the enzyme subunit was estimated to be 43,341. (2) The alpha-helical and beta-structure contents were calculated to be about 34 and 26%, respectively, from CD data. CD measurements of the denaturation process of enzyme by guanidine hydrochloride showed the presence of a stable intermediate during the denaturation. It has been suggested that the enzyme subunit is composed of two structurally dissimilar domains connected by a short polypeptide. (3) A synthetic DNA fragment has been inserted into the alanine racemase gene at the position corresponding to the hinge region. The gene was expressed in E. coli to produce an active enzyme with a molecular structure similar to the wild-type enzyme. (4) Single crystals of alanine racemase were prepared by the polyethylene glycol vapor diffusion method. X-ray crystallographic analysis is currently in progress. Less

Report

(3 results)
  • 1989 Annual Research Report   Final Research Report Summary
  • 1988 Annual Research Report
  • Research Products

    (11 results)

All Other

All Publications (11 results)

  • [Publications] Nobuyoshi Nakajima: "Distribution of Glutamate Racemase in Lactic Acid Bacteria and Further Characterization of the Enzyme from Pediococcus pentosaceus." Agric.Biol.Chem.52. 3099-3104 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Kenji Soda: "Thermostable Alanine Racemase and Its Application to D-Amino Acid Synthesis." Annals of the New York Academy of Sciences. 542. 375-382 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] 谷沢克行: "アミノ酸ラセマ-ゼ-その酵素化学と応用-" 発酵と工業. 46. 166-178 (1988)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Kenji Soda: "Thermostable Alanine Racemase:Its Structural Stability." Annals of the New York Academy of Sciences. 544. (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Nobuyoshi Nakajima, Katsuyuki Tanizawa, Hidehiko Tanaka, and Kenji Soda: "Distribution of Glutamate Racemase in Lactic Acid Bacteria and Further Characterization of the Enzyme from Pediococcus pentosaceus." Agric. Biol. Chem.52(12). 3099-3104 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Kenji Soda, Hidehiko Tanaka, and Katsuyuki Tanizawa: "Thermostable Alanine Racemase and Its Application to D-Amino Acid Synthesis." Annals of the New York Academy of Sciences, 542, 375-382, 1988.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Katsuyuki Tanizawa and Kenji Soda: "Amino Acid Racemase -Their Enzymological Properties and Application- (in Japanese)" Hakko to Kogyo, 46(3), 166-178, 1988.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Kenji Soda and Katsuyuki Tanizawa: "Thermostable Alanine Racemase: Its Structural Stability." Annals of the New York Academy of Sciences, 544, 1990.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1989 Final Research Report Summary
  • [Publications] Kenji Soda and Katsuyuki Tanizawa: "Thermostable Alanine Racemase:Its Structural Stability" ANNALS NEW YORK ACADEMY OF SCIENCES. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] Katsuyuki Tanizawa: Biochemistry. 27. 1311-1316 (1988)

    • Related Report
      1988 Annual Research Report
  • [Publications] Nobuyoshi Nakajima: Agricultural and Biological Chemistry. 52. 3099-3104 (1988)

    • Related Report
      1988 Annual Research Report

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Published: 1988-04-01   Modified: 2016-04-21  

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