Human migration to Japan by searching Helicobacter pylori genome
Publicly Offered Research
Project Area | Deciphering Origin and Establishment of Japonesians mainly based on genome sequence data |
Project/Area Number |
21H00346
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Research Category |
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
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Allocation Type | Single-year Grants |
Review Section |
Complex systems
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Research Institution | Oita University |
Principal Investigator |
山岡 吉生 大分大学, 医学部, 教授 (00544248)
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Project Period (FY) |
2021-04-01 – 2023-03-31
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Project Status |
Completed (Fiscal Year 2022)
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Budget Amount *help |
¥9,230,000 (Direct Cost: ¥7,100,000、Indirect Cost: ¥2,130,000)
Fiscal Year 2022: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2021: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
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Keywords | ヘリコバクターピロリ / 人類の移動の歴史 / 遺伝子解析 / ヘリコバクター・ピロリ / ゲノム / ヤポネシア / 沖縄 / 人類移動 / 人類の移動 / 次世代シーケンス |
Outline of Research at the Start |
ヘリコバクター・ピロリ(ピロリ菌)は、人類と共に旅をしてきた。我々はピロリ菌ゲノムを解析することで、アイヌや沖縄に特異的なピロリ菌が存在、沖縄特異的な菌には、分岐年代が旧石器時代と縄文時代の2系統が存在することがわかった。本研究では、ピロリ菌の全ゲノム解析を通して、これらのピロリ菌の起源、さらにはヒト側のDNAの検討も加えて、ヤポネシアの人類史を明らかにしていく。
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Outline of Annual Research Achievements |
人類は、約5~10万年前にアフリカ大陸を出て世界各地に広がった。胃癌の原因と考えられるピロリ菌は、人類の出アフリカ前にヒトの胃への感染を確立し、人類と共に旅をしてきた。我々はピロリ菌ゲノムを解析することで、人類集団の移動、特にアジアから日本列島(ヤポネシア)への移動を追っている。本研究では、世界最大規模のピロリ菌コレクションを生かして、次世代シーケンサーを用いてピロリ菌の全ゲノム解析を行うとともに、ヒト側のDNAもヤポネシアゲノム研究者の協力を得て調査することで、ヤポネシアの人類史を明らかにしていく計画とした。コロナ禍の影響もあり、新しい検体を入手することができず、当初は、保存されてあるピロリ菌遺伝子の解析を進めた。2022年には、次世代シーケンスにより、国内において、沖縄やアイヌ人のピロリ菌にそれぞれ特有のピロリ菌が存在し、沖縄の一部のピロリ菌はその起源が中央アジアにあることをiScience誌に発表することができた。その後も検討を重ね、本土(本州や九州)のピロリ菌も、胃癌の多い北部(青森)と胃癌の比較的少ない(大分)のピロリ菌には違いがあることが分かり、前向き研究を行うこととした。本年度は、鹿児島県、宮古島、さらに大分県北部で、ピロリ菌とヒト側のDNAを得ることができ、ピロリ菌においては、明らかに北部(青森)と南部(九州)では遺伝子が異なり、胃癌に関連する可能性のあるSNPs候補を得ることができた。また、従来、沖縄のピロリ菌の7割程度は、本土のピロリ菌と同一と思われていたが(iScience 2022年でも区別不可能)、沖縄に見られる本土に近いピロリ菌も、明らかに異なる系統を示すことも分かった。現在、ヒト側の検討を別予算で進めているところである。
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Research Progress Status |
令和4年度が最終年度であるため、記入しない。
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Strategy for Future Research Activity |
令和4年度が最終年度であるため、記入しない。
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Report
(2 results)
Research Products
(105 results)
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[Journal Article] Study of Helicobacter pylori Isolated from a High-Gastric-Cancer-Risk Population: Unveiling the Comprehensive Analysis of Virulence-Associated Genes including Secretion Systems, and Genome-Wide Association Study2023
Author(s)
Saruuljavkhlan B, Alfaray RI, Oyuntsetseg K, Gantuya B, Khangai A, Renchinsengee N, Matsumoto T, Akada J, Azzaya D, Davaadorj D, Yamaoka Y.
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Journal Title
Cancers (Basel)
Volume: 15
Issue: 18
Pages: 4528-4528
DOI
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Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Comparative genomics of two Vietnamese Helicobacter pylori strains, CHC155 from a non-cardia gastric cancer patient and VN1291 from a duodenal ulcer patient.2023
Author(s)
Phuc BH, Tuan VP, Binh TT, Tung PH, Tri TD, Dung HDQ, Thuan NPM, Fauzia KA, Tshibangu-Kabamba E, Alfaray RI, Saruuljavkhlan B, Matsumoto T, Akada J, Yamaoka Y.
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Journal Title
Sci Rep
Volume: 13
Issue: 1
Pages: 8869-8869
DOI
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[Journal Article] High levels of fecal calprotectin and C-reactive protein in patients with colitis.2023
Author(s)
Anindita B, Sugihartono T, Miftahussurur M, Maimunah U, Nusi IA, Setiawan PB, Purbayu H, Kholili U, Widodo B, Thamrin H, Vidyani A, Rezkitha YAA, Yamaoka Y.
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Journal Title
J Med Life.
Volume: 16
Issue: 1
Pages: 48-51
DOI
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Mutations Related to Antibiotics Resistance in Helicobacter pylori Clinical Isolates from Bangladesh.2023
Author(s)
Fauzia, Kartika Afrida, Hafeza Aftab, Evariste Tshibangu-Kabamba, Ricky Indra Alfaray, Batsaikhan Saruuljavkhlan, Alain Cimuanga-Mukanya, Takashi Matsumoto, Phawinee Subsomwong, Junko Akada, Muhammad Miftahussurur, and Yoshio Yamaoka.
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Journal Title
Antibiotics
Volume: 12
Issue: 2
Pages: 279-279
DOI
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Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Pathogenomics of Helicobacter pylori2023
Author(s)
Yamaoka Yoshio、Saruuljavkhlan Batsaikhan、Alfaray Ricky Indra、Linz Bodo
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Journal Title
Curr Top Microbiol Immunol
Volume: 444
Pages: 117-155
DOI
ISBN
9783031473302, 9783031473319
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] 日本国内より分離されたHelicobacter pylori の集団構造解析2023
Author(s)
友成航平, Batsaikhan S, Alfaray RI, Fauzia KA, 松成修, 赤田純子, 松本昂, 珍田大輔, 下山克, 金城渚, 金城徹, 金城福則, 山岡吉生
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Journal Title
大分県医学会雑誌
Volume: 24
Pages: 100-108
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] Novel Helicobacter pylori-associated hemolysis Hp0499 and Hp1490 and its association with severity of gastritis.2023
Author(s)
Sang Ketut Widiana, Titong Sugihartono, Dalla Doohan, Langgeng Agung Waskito, Kartika Afrida Fauzia, Yudith Annisa Ayu Rezkitha, Adi Wasis Prakosa, Ricky Indra Alfaray, Camilia Metadea Aji Safitri, Rizki Amalia, Yoshio Yamaoka, Muhammad Miftahussurur.
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Journal Title
F1000Research
Volume: 12
Pages: 22-22
DOI
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] 日本国内より分離された Helicobacter pylori の集団構造解析2023
Author(s)
友成航平, Saruuljavkhlan Batsaikhan, Ricky Indra Alfaray, Kartika Afrida Fauzia1, 松成修, 赤田純子, 松本昂, 珍田大輔, 下山克, 金城渚, 金城徹, 金城福則, 山岡吉生
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Journal Title
大分県医学会雑誌
Volume: 29
Pages: 100-108
Related Report
Peer Reviewed / Open Access
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[Journal Article] Urease Levels and Gastritis Stage in Dyspeptic Patients.2022
Author(s)
Miftahussurur M, Putri CDM, Sugihartono T, Syam AF, Purbayu H, Priyantini D, Kahar H, Rezkitha YAA, Nusi IA, Setiawan PB, Maimunah U, Waskito LA, Kholili U, Widodo B, Vidyani A, Thamrin H, Siregar GA, I'tishom R, Uchida T, Yamaoka Y.
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Journal Title
Acta Med Indones
Volume: 54
Pages: 42-51
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[Journal Article] Macronutrient and micronutrient intake in dietary habits contributed to dyspeptic symptoms in Indonesia.2022
Author(s)
Miftahussurur M., Alfaray R.I., Rezkitha Y.A.A., Fauzia K.A., Maulahela H., Muzellina V.N., Rotty L.S.M., Namara Y.S., Abubakar A., Mustika S., Ratnasari N., Santosa A.Y., Richardo M., Wibawa I.D.N., Adnyana I.K., Rachman P.H., Rachman B.E., Doohan D., Waskito L.A., Yamaoka Y., Khomsan A.
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Journal Title
Gaceta Medica de Caracas
Volume: 130
Issue: 2
Pages: 266-275
DOI
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] Role of fecal calprotectin as a hypoxic intestinal damage biomarker in COVID-19 patients.2022
Author(s)
Adriana DN, Sugihartono T, Nusi IA, Setiawan PB, Purbayu H, Maimunah U, Kholili U, Widodo B, Thamrin H, Vidyani A, Maulahela H, Yamaoka Y, Miftahussurur M.
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Journal Title
Gut Pathog
Volume: 14
Issue: 1
Pages: 34-34
DOI
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Helicobacter pylori infection: is there circulating vacuolating cytotoxin A or cytotoxin-associated gene A protein?2022
Author(s)
Imoto I, Oka S, Katsurahara M, Nakamura M, Yasuma T, Akada J, D'Alessandro-Gabazza CN, Toda M, Horiki N, Gabazza EC, Yamaoka Y.
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Journal Title
Gut Pathog
Volume: 14
Issue: 1
Pages: 43-43
DOI
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Helicobacter pylori prevalence in Indonesia: Higher infection risk in Eastern region population.2022
Author(s)
Maulahela H, Doohan D, Annisa Ayu Rezkhita Y, Syam AF, Waskito LA, Metadea Aji Savitri C, Richardo M, Rahman A, Namara YS, Shatri H, Sanityoso A, Alamsyah. Siregar G, Sudarmo E, Uchida T, Vilaichone RK, Yamaoka Y, Muhammad Miftahussurur.
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[Journal Article] Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations.2022
Author(s)
Thorpe HA, Tourrette E, Yahara K, Vale FF, Liu S, Oleastro M, Alarcon T. Perets TT, Latifi-Navid S, Yamaoka Y, Martinez-Gonzalez B, Karayiannis I, Karamitros T, Sgouras DN, Elamin W, Pascoe B, Sheppard SK, Ronkainen J, Aro P, Engstrand L, Agreus L, Suerbaum S, Thorell K, Falush D.
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Journal Title
Nature Communications
Volume: 13
Issue: 1
Pages: 6842-6842
DOI
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[Journal Article] Serum pepsinogen level as a biomarker for atrophy, reflux esophagitis, and gastric cancer screening in Indonesia.2022
Author(s)
Miftahussurur M, Waskito LA, Syam AF, Nusi IA, Wibawa IDN, Rezkitha YAA, Fauzia KA, Siregar GA, Akil F, Waleleng BJ, Saudale AMJ, Abubakar A, Maulahela H, Richardo M, Rahman A, Namara YS, Sudarmo E, Adi P, Maimunah U, Setiawan, Yamaoka Y.
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Journal Title
Journal of Research in Medical Sciences
Volume: 27
Issue: 1
Pages: 90-90
DOI
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[Presentation] Outer membrane protein HopF is involved in biofilm formation and virulence in Helicobacter pylori2023
Author(s)
Fauzia KA, Sugawara Y, Obata, M, Amalia R, Alfaray RI, Metadea C, Akada, J, Matsumoto, T, Miftahussurur M, Yamaoka Y.
Organizer
The 19th Korea-Japan H. pylori Joint Symposium
Related Report
Int'l Joint Research
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[Presentation] Mutations Related to Antibiotics Resistance in Helicobacter pylori Clinical Isolates from Bangladesh2023
Author(s)
Fauzia, KA, Hafeza A, Tshibangu-Kabamba E, Alfaray RI, Batsaikhan S, Cimuanga-Mukanya A, Matsumoto T, Subsomwong P, Akada J, Miftahussurur M, Yamaoka Y.
Organizer
International Symposium on Helicobacter and Upper Gastrointestinal Disease
Related Report
Int'l Joint Research
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[Presentation] Outer membrane protein HopF is involved in biofilm formation and virulence in Helicobacter pylori2023
Author(s)
Kartika Afrida Fauzia, Yuri Sugawara, Mayu Obata, Rizki Amalia, Ricky Indra Alfaray, Camilia Metadea, Junko Akada, Takashi Matsumoto, Muhammad Miftahussurur, Yoshio Yamaoka
Organizer
The 19th Korea-Japan H. pylori Joint Symposium, Gut and liver
Related Report
Int'l Joint Research
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[Presentation] Mutations Related to Antibiotics Resistance in Helicobacter pylori Clinical Isolates from Bangladesh2023
Author(s)
Fauzia, Kartika Afrida, Hafeza Aftab, Evariste Tshibangu-Kabamba, Ricky Indra Alfaray, Batsaikhan Saruuljavkhlan, Alain Cimuanga-Mukanya, Takashi Matsumoto, Phawinee Subsomwong, Junko Akada, Muhammad Miftahussurur, and Yoshio Yamaoka
Organizer
International Symposium on Helicobacter and Upper Gastrointestinal Disease
Related Report
Int'l Joint Research
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