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Wntシグナル伝達系因子の離合集散を制御するDIXドメインの構造生物学

Publicly Offered Research

Project AreaIntegrative understanding of biological processes mediated by transient macromolecular complexes; New technology for visualizing physiologically metastable states.
Project/Area Number 22121519
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionUniversity of Hyogo

Principal Investigator

樋口 芳樹  兵庫県立大学, 生命理学研究科, 教授 (90183574)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Fiscal Year 2011: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2010: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
KeywordsX線結晶解析 / 構造機能相関 / 離合集散の生物学 / DIXドメイン / Wntシグナル伝達
Research Abstract

Wingless(Wnt)は分泌性細胞間シグナル伝達タンパク質で,線虫やショウジョウバエからヒトに至るまで生物種を越えて保存されており,細胞の増殖や分化・運動・初期胚発生時の体軸形成や器官形成等の重要な生物学的機能を制御する.Wntの細胞内シグナル伝達機構はAxinやβ-カテニンなど複数のタンパク質複合体により制御されている.本研究ではWntシグナル伝達経路の重要な3種類のタンパク質(Axin,Dishevelled(Dvl),Coiled-coil-DIX1(CCD1))が有するDIXドメインの結晶構造を解明し,それぞれのホモおよびヘテロオリゴマー化の本質を理解することを目的とした.
平成22年度は,CCD1-DIXドメインの結晶解析を行い,結晶中で7個のDIX分子が分子間のβ-ブリッジ相互作用により,らせん状オリゴマーを形成していることを見いだした.また,このらせんは,2本で逆方向の2重らせんを形成していた.平成23年度は,Dvl-DIXの点変異体の結晶解析に成功した.その結果,Dvl-DIXは,2種類の空間群に属する結晶が得られ,その結晶中でDIXドメイン分子は,それぞれ6回および8回のらせんを形成していることを明らかにした.らせんの1巻分のピッチや半径は異なるが,2番目と4番目のβ-ストランドによる分子間相互作用は,すべてのDIXドメインのホモオリゴマーで共通の相互作用様式であることがわかった.しかし,このDvl-DIXも2重らせんを形成するが,CCDl-DIXとは異なり,2本のらせんが,順方向に寄り添ってらせん間相互作用をしていることが明らかになった.

Report

(2 results)
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (41 results)

All 2012 2011 2010

All Journal Article (20 results) (of which Peer Reviewed: 20 results) Presentation (20 results) Book (1 results)

  • [Journal Article] The Three-dimensional Structure of Nylon Hydrolase and the Mechanism of Nylon-6 Hydrolysis2012

    • Author(s)
      S.Negoro, et al
    • Journal Title

      J.Biol.Chem.

      Volume: 287 Issue: 7 Pages: 5079-5090

    • DOI

      10.1074/jbc.m111.321992

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An O-Centered Structure of the Trinuclear Copper Center in the Cys500Ser/Glu506Gln Mutant of CueO and Structural Changes in Low to High X-Ray Dose Conditions2012

    • Author(s)
      H.Komori, et al
    • Journal Title

      Angewandte Chemie

      Volume: 51 Issue: 8 Pages: 1861-1864

    • DOI

      10.1002/anie.201107739

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An O-Centered Structure of the Trinuclear Copper Center in the Cys500Ser/Glu506Gln Mutant of CueO and Structural Changes in Low to High X-Ray Dose Conditions2012

    • Author(s)
      H.Shomura, et al
    • Journal Title

      Protein Science

      Volume: 21 Issue: 5 Pages: 707-716

    • DOI

      10.1002/pro.2058

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Dynamics Studies on Mutational Structures of a Nylon-6 Byproduct-degrading Enzyme2011

    • Author(s)
      T.Baba, et al
    • Journal Title

      Chem.Phys.Lett.

      Volume: 507 Issue: 1-3 Pages: 157-161

    • DOI

      10.1016/j.cplett.2011.03.046

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallographic Characterization of the DIX Domain of the Wnt Signalling Positive Regulator Ccd12011

    • Author(s)
      S.Terawaki, et al
    • Journal Title

      Acta Crystallgor

      Volume: F67 Issue: 7 Pages: 758-761

    • DOI

      10.1107/s1744309111016526

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and Preliminary X-ray Diffraction Analysis of Membrane-bound Respiratory [NiFe] Hydrogenase from Hydrogenovibrio marinus2011

    • Author(s)
      Y.Shomura, et al
    • Journal Title

      Acta Crystallgor

      Volume: 67 Issue: 7 Pages: 827-829

    • DOI

      10.1107/s1744309111019804

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and X-ray Diffraction Analysis of Nylon Oligomer Hydrolase (NylC) from Agromyces sp.KY5R2011

    • Author(s)
      K.Yasuhira, et al
    • Journal Title

      Acta Crystallgor

      Volume: 67 Issue: 8 Pages: 892-895

    • DOI

      10.1107/s1744309111022858

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of π-Electron Systems in Stabilization of the Oxidized Tetraheme Architecture in Cytochrome c_32011

    • Author(s)
      Y.Takayama, et al
    • Journal Title

      Bull.Chem.Soc.Jpn.

      Volume: 84 Issue: 10 Pages: 1096-1101

    • DOI

      10.1246/bcsj.20110039

    • NAID

      130004152811

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis for a[4Fe-3S] Cluster in the Oxygen-tolerant Membrane-bound[Ni-Fe]-hydrogenase2011

    • Author(s)
      Y. Shomura, K. Yoon, H. Nishihara, Y. Higuchi
    • Journal Title

      Nature

      Volume: 479 Issue: 7372 Pages: 253-257

    • DOI

      10.1038/nature10504

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Positively Charged Domain Located Downstream of PIP Box, Together with TD Amino Acids within PIP Box, is Important for CRL4^<Cdt2>-mediated Proteolysis2011

    • Author(s)
      M.Michishita, et al.
    • Journal Title

      Gene to Cells

      Volume: 16 Pages: 12-22

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Functional Role of the Glycosylated N-terminal Domain of Chondromodulin-I2011

    • Author(s)
      J.Kondo, et al.
    • Journal Title

      J.Bone Miner.Metab.

      Volume: 29 Pages: 23-30

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] How Coenzyme B12-dependent Ethanolamine Ammonialyase Deals with Both Enantiomers of 2-Amino-1-propanol as Substrates : Structure-based Rationalization2011

    • Author(s)
      N.Shibata, et al.
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 591-598

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The PHCCEx Domain of Tiam1/2 is a Novel Protein-and Membrane-binding Module2010

    • Author(s)
      S.Terawaki, et al.
    • Journal Title

      EMBO J.

      Volume: 29 Pages: 236-250

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cytochrome c polymerization by successive domain swapping at the C-terminal helix2010

    • Author(s)
      S.Hirota, et al.
    • Journal Title

      Proc.Natl.Acad.Sci.

      Volume: 107 Pages: 12854-12859

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and Molecular Evolution of Multicopper Blue Proteins2010

    • Author(s)
      H.Komori, et al.
    • Journal Title

      BIOMOLECULAR CONCEPTS

      Volume: 1 Pages: 31-40

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structures of Ethanolamine Ammonia-lyase complexed with Coenzyme B_<12> Analogs and Substrates2010

    • Author(s)
      N.Shibata, et al.
    • Journal Title

      J Biol.Chem.

      Volume: 285 Pages: 26484-26493

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression, Crystallization and Preliminary X-ray Crystallographic Study of Ethanolamine Ammonia-lyase from Escherichia coli2010

    • Author(s)
      N.Shibata, et al.
    • Journal Title

      Acta Crystallogr.

      Volume: F66 Pages: 709-711

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Purification, Crystallization and Preliminary X-ray Analysis of the Dissimilatory Sulfite Reductase from Desulfovibrio vulgaris Miyazaki F2010

    • Author(s)
      H.Ogata, et al.
    • Journal Title

      Acta Crystallogr.

      Volume: F66 Pages: 1470-1472

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and Preliminary X-ray Analysis of Dimeric and Trimeric Cytochromes c from Horse Heart2010

    • Author(s)
      M.Taketa, et al.
    • Journal Title

      Acta Crystallogr.

      Volume: F66 Pages: 1477-1479

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure Analysis of Bacillus subtilis Ferredoxin-NADP^+ Oxidoreductase and the Structural Basis for Its Substrate Selectivity2010

    • Author(s)
      H.Komori, et al.
    • Journal Title

      Protein Science

      Volume: 19 Pages: 2279-2290

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 酸素耐性膜結合型[NiFe]ヒドロゲナーゼのX線結晶構造解析-水素エネルギー利用に向けた基礎科学的研究-2011

    • Author(s)
      樋口芳樹
    • Organizer
      関西サイエンスフォーラム
    • Place of Presentation
      リーガロイヤルNCB(大阪府)(招待講演)
    • Year and Date
      2011-11-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] ゼータサイザーでタンパク質のオリゴマー化を解析する2011

    • Author(s)
      樋口芳樹
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      北海道大学(北海道)(招待講演)
    • Year and Date
      2011-11-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] マルチ銅酸化酵素の構造解析2011

    • Author(s)
      小森博文, 等
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都国際会議場(京都府)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural study of the O_2-tolerant [NiFe] hydrogenase2011

    • Author(s)
      Y.Shomura, et al
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学(兵庫県)
    • Year and Date
      2011-09-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] シトクロムc-552の多量体生成と二量体構造2011

    • Author(s)
      林有吾, 等
    • Organizer
      第5回バイオ関連化学シンポジウム
    • Place of Presentation
      つくばぼ国際会議場(茨城県)
    • Year and Date
      2011-09-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] Crystal structure analysis of release factor 32011

    • Author(s)
      K.Kihira, et al
    • Organizer
      XXII Congress and General Assembly of International Union of Crystallography
    • Place of Presentation
      Madrid (Spain)
    • Year and Date
      2011-08-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Primer design for cDNA synthesis based on the crystal structure2011

    • Author(s)
      N.Shibata, Y.Higuchi
    • Organizer
      XXII Congress and General Assembly of International Union of Crystallography
    • Place of Presentation
      Madrid (Spain)
    • Year and Date
      2011-08-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] ウマシトクロムcおよび緑膿菌シトクロムc_<551>の多量体形成2011

    • Author(s)
      廣田俊, 等
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      茨城大学(茨城県)
    • Year and Date
      2011-06-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 中性子構造化学でヒドロゲナーゼの水素分子活性化機構は理解できるか?2011

    • Author(s)
      樋口芳樹
    • Organizer
      中性子構造生物学およびタンパク質水和構造に関するシンポジウム
    • Place of Presentation
      水戸
    • Year and Date
      2011-03-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] Expression and Purification of the Rab GTPase-effector Complex2011

    • Author(s)
      S.Terawaki, et al.
    • Organizer
      International Symposium on Chemistry of Reductases
    • Place of Presentation
      名古屋
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural Basis for the Reaction Mechanism of Dissimilatory Sulfite Reductase2011

    • Author(s)
      Y.Shomura, et al.
    • Organizer
      International Symposium on Chemistry of Reductases IV
    • Place of Presentation
      名古屋
    • Related Report
      2010 Annual Research Report
  • [Presentation] Crystallization and X-ray Analysis of ATP-sulfurylase from Sulfate-reducing Bacteria2011

    • Author(s)
      M.Taketa, et al.
    • Organizer
      International Symposium on Chemistry of Reductases IV
    • Place of Presentation
      名古屋
    • Related Report
      2010 Annual Research Report
  • [Presentation] Wntシグナル伝達で機能するCCD1 DIXドメインのX線結晶構遣解析2010

    • Author(s)
      寺脇慎一, et al.
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] Wntシグナル伝達で機能するCCD1のオリゴマー形成機構に関する構造学的研究2010

    • Author(s)
      寺脇慎一, et al.
    • Organizer
      2010年度日本結晶学会年会
    • Place of Presentation
      吹田
    • Year and Date
      2010-12-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] Cytochrome c Polymerization by Successive Domain Swapping at the C-terminal Helix2010

    • Author(s)
      S.Hirota, et al.
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      仙台
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Strusctural Analysis of Releasae Factor 32010

    • Author(s)
      K.Kihira, et al.
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      仙台
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Wntシグナル制御因子Dishevelled-DIXドメインのX線構造解析2010

    • Author(s)
      柴田直樹
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2010-06-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Wntシグナル伝達機構ではたらくCCD1の構造化学的研究2010

    • Author(s)
      寺脇慎一, et al.
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2010-06-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] 膜結合型[NiFe]ヒドロゲナーゼのX線結晶構造解析2010

    • Author(s)
      庄村康人, et al.
    • Organizer
      2010年度日本結晶学会年会
    • Place of Presentation
      吹田
    • Related Report
      2010 Annual Research Report
  • [Presentation] B12-補酵素関与エタノールアミアンモニアリアーゼの立体構造に基づく立体化学経路の解明2010

    • Author(s)
      柴田直樹, et al.
    • Organizer
      2010年度日本結晶学会年会
    • Place of Presentation
      吹田
    • Related Report
      2010 Annual Research Report
  • [Book] 構造生物学-原子構造からみた生命現象の営み2010

    • Author(s)
      樋口芳樹, 中川敦史
    • Total Pages
      253
    • Publisher
      共立出版株式会社
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2018-03-28  

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