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Direct visualization of the excited state structural dynamics of a synthetic Cu(I)-phenanthroline complex by TR-SFX method

Publicly Offered Research

Project AreaNon-equilibrium-state molecular movies and their applications
Project/Area Number 22H04744
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionTokyo Institute of Technology

Principal Investigator

Maity Basudev  東京工業大学, 生命理工学院, 特任助教 (60815421)

Project Period (FY) 2022-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Fiscal Year 2023: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2022: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
KeywordsTR-SFX / Mn-carbonyl complex / Lysozyme / Serial crystallography / Reaction intermediate / Ferritin cage / Copper complex / ferritin / Metal complex / Light reaction / Ferritin cage crystal / Cu(I) complex / Structural distortion
Outline of Research at the Start

Excited state structural dynamics of transition metal complexes are important not only for applications but also for rethinking the fundamental concepts. Ultrafast spectroscopy is the common method for such studies. However, real-space determination of the structural changes in the excited state remained challenging due to transient nature of the intermediate(S). In this proposal, we aim to use the TR-SFX method for observing structural dynamics of a tetrahedral Cu(I)-phen complex in ultrafast timescale.

Outline of Annual Research Achievements

We immobilized a light-sensitive Mn-carbonyl complex in the porous lysozyme crystal and characterized by ATR-IR and absorbance spectroscopy. We determined the structure under darkness and compared with metal-free protein. We applied TR-SFX method to determine the changes at the metal reaction center after light irradiation. This gave interesting features such as releasing of CO ligand sequentially and the intermediate in which a water molecule was coordinated. The release of CO ligand was estimated by considering the appearance of negative density features after light irradiation which was were increased with increasing delay time. High laser intensity was found to trigger the CO release reaction. The results were validated by the QM MM calculations.

Research Progress Status

令和5年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

令和5年度が最終年度であるため、記入しない。

Report

(2 results)
  • 2023 Annual Research Report
  • 2022 Annual Research Report
  • Research Products

    (3 results)

All 2024 2023

All Journal Article (3 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 3 results,  Open Access: 3 results)

  • [Journal Article] Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography2024

    • Author(s)
      B. Maity, M. Shoji, F. Luo, T. Nakane, S. Abe, S. Owada, J. Kang, K. Tono, R. Tanaka, T. T. Pham, M. Kojima, Y. Hishikawa, J. Tanaka, J. Tian, M. Nagama, T. Suzuki, H. Noya, Y. Nakasuji, A. Asanuma, X. Yao, S. Iwata, Y. Shigeta, E. Nango, T. Ueno
    • Journal Title

      Nat. Commun

      Volume: 15 Issue: 1 Pages: 5518-5518

    • DOI

      10.1038/s41467-024-49814-9

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Atomic-Level Insights into a Unique Semi-Clathrate Hydrate Formed in a Confined Environment of Porous Protein Crystal2023

    • Author(s)
      B. Maity, J. Tian, T. Furuta, S. Abe, T. Ueno
    • Journal Title

      Cryst. Growth Des.

      Volume: 23 Issue: 10 Pages: 7448-7458

    • DOI

      10.1021/acs.cgd.3c00880

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fusion of amyloid beta with ferritin yields an isolated oligomeric beta-sheet-rich aggregate inside the ferritin cage2023

    • Author(s)
      B. Maity, S. Kameyama, J. Tian, T. T. Pham, S. Abe, E. Chatani, K. Murata, T. Ueno
    • Journal Title

      Biomater. Sci.

      Volume: 12 Issue: 9 Pages: 2408-2417

    • DOI

      10.1039/d4bm00173g

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research

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Published: 2022-04-19   Modified: 2024-12-25  

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