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2011 Fiscal Year Final Research Report

Study of complex molecular systems by advanced molecular spectroscopy

Planned Research

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Project AreaMolecular Science for Supra Functional Systems ? Development of Advanced Methods for Exploring Elementary Process
Project/Area Number 19056009
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

TAHARA Tahei  独立行政法人理化学研究所, 田原分子分光研究室, 主任研究員 (60217164)

Co-Investigator(Kenkyū-buntansha) TAKEUCHI Satoshi  独立行政法人理化学研究所, 田原分子分光研究室, 専任研究員 (50280582)
YAMAGUCHI Shoichi  独立行政法人理化学研究所, 田原分子分光研究室, 専任研究員 (60250239)
ISHII Kunihiko  独立行政法人理化学研究所, 田原分子分光研究室, 研究員 (80391853)
HOSOI Haruko  東邦大学, 理学部生物分子科学科, 講師 (00313396)
MORITA Akihiro  東北大学, 理学研究科, 教授 (70252418)
ASANO Motoko  首都大学東京, 理工学研究科, 准教授 (80201888)
Project Period (FY) 2007 – 2011
Keywords凝縮相 / ダイナミクス / 超高速分光 / 非線形分光 / 相関分光 / 複雑分子系 / 界面 / 生体関連分子
Research Abstract

We studied complex molecular systems using the most advanced spectroscopy. With ultrafast spectroscopy, we elucidated the multi-dimensional reaction coordinate of isomeriataion of cis-stilbene, clarified the mechanism of the ultrafast structural chang of Cu(I) complexes, and succeeded in tracking nuclear motion along the isomerization coordinate of a prototypical cyanine dye. With interface-selective nonlinear spectroscopy, we developed heterodyne-detected electronic and vibrational sum-frequency generation spectroscopies and obtained a number of new insights into fundamental phenomena at water interfaces including the interface of model membranes. For correlation spectroscopy, we combined fluorescence intensity correlation measurements and fluorescence lifetime measurements to develop a new method that has a very high potential for the study of structural fluctuation of biopolymers.

  • Research Products

    (44 results)

All 2012 2011 2010 2009 2008 2007 Other

All Journal Article (28 results) (of which Peer Reviewed: 28 results) Presentation (12 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Extracting decay curves of the correlated fluorescence photons measured in fluorescence correlation spectroscopy2012

    • Author(s)
      K. ISHII, T. TAHARA
    • Journal Title

      Chem. Phys. Lett.

      Volume: 519-520 Pages: 130-133

    • Peer Reviewed
  • [Journal Article] Up" versus "down" alignment and hydration structures of solutes at the air/wate interface revealed by he terodyne-detected electronic sum frequency generation with classical molecular dynamics simulation2011

    • Author(s)
      S. YAMAGUCHI, H. WATANABE, S. K. MONDAL, A. KUNDU, T. TAHARA
    • Journal Title

      J. Chem. Phys

      Volume: 135 Pages: 194705

    • Peer Reviewed
  • [Journal Article] Unified Molecular View of Air/Wat er Interface Based on Experimental and Theoretical X^<(2)> Spectra of Isotopically Diluted Water Surface2011

    • Author(s)
      S. NIHONYANAGI, T. ISHIYAMA, T. K. LEE, S. YAMAGUTHI, M. BONN, A. MORITA, T. TAHARA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 133 Pages: 16875‐16880

    • Peer Reviewed
  • [Journal Article] Tracking of the Nuclear Wavepacke t Motion in Cyanine Photoisomeriza tion by Ultrafast Pump-Dump-Probe Spectroscopy2011

    • Author(s)
      Z.R. WEI, T. NAKAMURA, S. TAKEUCHI, T. TAHARA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 133 Pages: 8205-8210

    • Peer Reviewed
  • [Journal Article] Electric quadrupole contribution to the nonresonant background of sum frequency generation at air/liquid interfaces2011

    • Author(s)
      S. YAMAGUCHI, K. SHIRATORI, A. MORITA, T. TAHARA
    • Journal Title

      J. Chem. Phys.

      Volume: 134 Pages: 184705

    • Peer Reviewed
  • [Journal Article] Coherent nuclear dynamics in ultrafast photoinduced structural change of bis-diimine copper (I) complex2011

    • Author(s)
      M. IWAMURA, H. WATANABE, K. ISHII, S. TAKEUCHI, T. TAHARA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 133 Pages: 7728-7736

    • Peer Reviewed
  • [Journal Article] Acid-base equilibrium at an aqueous interface: pH spectrometry by heterodyne-detected electronic sum frequency generation2011

    • Author(s)
      S. YAMAGUTHI, T. TAHARA
    • Journal Title

      J. Phys. Chem. C

      Volume: 115 Pages: 4168-4173

    • Peer Reviewed
  • [Journal Article] Molecules at the air/water interface experience more inhomogeneous solvation environment than in bulk solvents: A quantitative bandshape analysis of interfacial electronic spectra obtained by HD-ESFG2011

    • Author(s)
      S. K. MONDAL S. YAMAGUCHI, T. TAHARA
    • Journal Title

      J. Phys. Chem. C

      Volume: 115 Pages: 3083-3089

    • Peer Reviewed
  • [Journal Article] Exploration of the correlation between solvation dynamics and internal dynamics of a protein2011

    • Author(s)
      A. JHA, K. ISHII, J. UDGAONKAR, T. TAHARA, G. KRISHNAMOORTHY
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 397-408

    • Peer Reviewed
  • [Journal Article] Resolving inhomogeneity using lifetime-weighted fluorescence correlation spectroscopy2010

    • Author(s)
      K. ISHII, T. TAHARA
    • Journal Title

      J. Phys. Chem. B

      Volume: 144 Pages: 12383-12391

    • Peer Reviewed
  • [Journal Article] Physisorption gives narrower orientational distribution than chemisorption on a glass surface: A polarization-sensitive linear and nonlinear optical study2010

    • Author(s)
      S. YAMAGUCHI, H. HOSOI, M. YAMASHITA, P. SEN, T. TAHARA
    • Journal Title

      J. Phys. Chem. Letters

      Volume: 1 Pages: 2662-2665

    • Peer Reviewed
  • [Journal Article] Structure and orientation of water at charged lipid monolayer/water nterfaces probed by heterodyne-detected vibrational sum frequency generation spectroscopy2010

    • Author(s)
      J.A. MONDAL, S. NIHONYANAGI, S. YAMAGUCHI, T. TAHARA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 132 Pages: 10656-10657

    • Peer Reviewed
  • [Journal Article] Water hydrogen bond structure near highly charged interfaces is not like ice2010

    • Author(s)
      S. NIHONYANAGI, S. YAMAGUCHI, T. TAHARA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 132 Pages: 6867-6869

    • Peer Reviewed
  • [Journal Article] Ultrafast dynamics of malachite green at the air/water interface studied by femtosecond time-resolved electronic sum-frequency generation (TR-ESFG): An indicator for local viscosity2010

    • Author(s)
      P. SEN S. YAMAGUCHI, T. TAHARA
    • Journal Title

      Faraday Discussion

      Volume: 145 Pages: 411-428

    • Peer Reviewed
  • [Journal Article] Half hydration” at the air/water interface revealed by HD-ESFG spectroscopy, polarization SHG, and MD simulation2010

    • Author(s)
      H. WATANABE, S. YAMAGUCHI, S. SEN, A. MORITA, T. TAHARA
    • Journal Title

      J. Chem. Phys.

      Volume: 132 Pages: 144701/1-144701/9

    • Peer Reviewed
  • [Journal Article] ON/OFF red emission from azaporphine in a coordination cage in water2009

    • Author(s)
      K. ONO, J. K. KLOSTERMAN M. YOSHIZAWA, K. SEKIGUCHI, T. TAHARA, M. FUJITA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 131 Pages: 12526-12527

    • Peer Reviewed
  • [Journal Article] Infrared-induced coherent vibration of a hydrogen-bonded system: Effects of mechanical and electrical anharmonic couplings2009

    • Author(s)
      K. ISHII, S. TAKEUCHI, T. TAHARA
    • Journal Title

      J. Chem. Phys.

      Volume: 131 Pages: 044512/1-044512/9

    • Peer Reviewed
  • [Journal Article] Property of Anion Binding Site of pharaonis Halorhodopsin Studied by Ultrafast Pump-Probe Spectroscopy and Low-Temperature FTIR Spectroscopy2009

    • Author(s)
      K. NAKASHIMA, T. NAKAMURA, S. TAKEUCHI, M. SHIBATA, M. DEMURA, T. TAHARA, H. KANDORI
    • Journal Title

      J. Phys. Chem. B.

      Volume: 113 Pages: 8429-8434

    • Peer Reviewed
  • [Journal Article] Energy transfer in a mechanically trapped exciplex2009

    • Author(s)
      J. KLOSTERMAN, M. IWAMURA, T. TAHARA, M. FUJITA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 131 Pages: 9478-9479

    • Peer Reviewed
  • [Journal Article] Spectroscopic tracking of structural evolution in ultrafast stilbene photoisomerization2008

    • Author(s)
      S. TAKEUCHI, S. RUHMAN, T. TSUNEDA, M. CHIBA, T. TAKETSUGU, T. TAHARA
    • Journal Title

      Science

      Volume: 322 Pages: 1073-1077

    • Peer Reviewed
  • [Journal Article] Revised steady-state fluorescence spectrum and nature of the reactive S_1 state of cis-stilbene in solution2008

    • Author(s)
      T. NAKAMURA, S. TAKEUCHI, N. SUZUKI, T. TAHARA
    • Journal Title

      Chem. Phys. Lett.

      Volume: 465 Pages: 212-215

    • Peer Reviewed
  • [Journal Article] New insight into the surface denaturation of proteins: electronic sum frequency generation study of cytochrome c at water interfaces2008

    • Author(s)
      P. SEN, S. YAMAGUCHI, T. TAHARA
    • Journal Title

      J. Phys. Chem. B

      Volume: 112 Pages: 13473-13475

    • Peer Reviewed
  • [Journal Article] Heterodyne-detected electronic sum frequency generation: 'Up' vs 'down' alignment of interfacial molecules2008

    • Author(s)
      S. YAMAGUCHI, T. TAHARA
    • Journal Title

      J. Chem. Phys.

      Volume: 129 Pages: 101102

    • Peer Reviewed
  • [Journal Article] Ultrafast pump-probe study of the primary photoreaction process in pharaonis halorhodopsin: Halide-ion dependence and isomerization dynamics2008

    • Author(s)
      T. NAKAMURA, S. TAKEUCHI, M. SHIBATA, M. DEMURA, H. KANDORI, T. TAHARA
    • Journal Title

      J. Phys. Chem. B

      Volume: 112 Pages: 12795-12800

    • Peer Reviewed
  • [Journal Article] Hidden Electronic State of Enhanced Green Fluorescence Protein2008

    • Author(s)
      H. HOSOI, S. YAMAGUCHI, H. MIZUNO, A. MIYAWAKI, T. TAHARA
    • Journal Title

      J. Chem. Phys. B

      Volume: 112 Pages: 2761-2763

    • Peer Reviewed
  • [Journal Article] Femtosecond time-resolved electronic sum-frequency generation (TR-ESFG) spectroscopy: A new method to investigate ultrafast dynamics at liquid interfaces2008

    • Author(s)
      K. SEKIGUCHI, S. YAMAGUCHI, T. TAHARA
    • Journal Title

      J. Chem. Phys.

      Volume: 128 Pages: 114715/1-114715/8

    • Peer Reviewed
  • [Journal Article] X^<(4)> Raman spectroscopy for buried water interfaces2007

    • Author(s)
      S. YAMAGUCHI, T. TAHARA
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 46 Pages: 7609-7612

    • Peer Reviewed
  • [Journal Article] Real-time observation of the photoinduced structural change of bis-2,9-dimethyl-1,10-phenanthroline copper (I) by femtosecond luorescence spectroscopy: A realistic potential curve of the Jahn-Teller distortion2007

    • Author(s)
      M. IWAMURA, S. TAKEUCHI, T. TAHARA
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 129 Pages: 5248-5256

    • Peer Reviewed
  • [Presentation] Molecular behavior at water interfaces revealed by heterodyne-detected sum-frequency generation2011

    • Author(s)
      T. TAHARA
    • Organizer
      The Third Asian Spectroscopy Conference (ASC2011)
    • Place of Presentation
      Xiamen, China
    • Year and Date
      20111128-1200
  • [Presentation] Seeing the unseen with ultrashort optical pulses2011

    • Author(s)
      T. TAHARA
    • Organizer
      New Zealand Institute of Chemistry Conference 2011 (NZIC2011)
    • Place of Presentation
      Hamilton, New Zealand
    • Year and Date
      20111127-1201
  • [Presentation] Water interfaces studied by steady-state and time-resolved heterodyne-detected vibrational sum-frequency generation2011

    • Author(s)
      T. TAHARA
    • Organizer
      The Federation of Analytical Chemistry and Spectroscopy Societies conference (FACSS 2011)
    • Place of Presentation
      Reno, USA
    • Year and Date
      20111002-07
  • [Presentation] Nuclear dynamics of reacting excited states studied by multi-pulse time-domain spectroscopy2010

    • Author(s)
      T. TAHARA
    • Organizer
      5th International Conference on Coherent Multidimensional Spectroscopy (CMDS)
    • Place of Presentation
      Minneapolis, Minnesota, USA
    • Year and Date
      20100817-20
  • [Presentation] Vibrational Spectroscopy Using Short Optical Pulses: Coherence, Transients and Interfaces2010

    • Author(s)
      T. TAHARA
    • Organizer
      XXII International conference on Raman spectroscopy (ICORS2010)
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      20100808-13
  • [Presentation] Multiplex heterodyne-detected electronic and vibrational sum-frequency generation and their application2010

    • Author(s)
      T. TAHARA
    • Organizer
      Telluride Science Research Conference (TSRC) on Nonlinear Optics at Interfaces
    • Place of Presentation
      Telluride, Colorado, USA
    • Year and Date
      20100621-25
  • [Presentation] Ultrafast photochemical dynamics studied by femtosecond time-resolved fluorescence spectroscopy2009

    • Author(s)
      T. TAHARA
    • Organizer
      Ultrafast photochemical dynamics studied by femtosecond time-resolved fluorescence spectroscopy
    • Place of Presentation
      Mumbai, India
    • Year and Date
      20090316-19
  • [Presentation] Observing structural evolution of reacting molecules: ultrafast photoisomerization of cis-stilbene2009

    • Author(s)
      T. TAHARA
    • Organizer
      Femtochemistry IX
    • Place of Presentation
      Beijing, China
    • Year and Date
      2009-08-13
  • [Presentation] Looking for the reaction coordinate of photoisomerization of cis-stilbene2008

    • Author(s)
      T. TAHARA
    • Organizer
      Gordon Conference on Vibrational Spectroscopy
    • Place of Presentation
      South Hadley, Massachusetts, USA
    • Year and Date
      20080803-08
  • [Presentation] New nonlinear electronic and vibrational spectroscopy to study liquid interfaces2007

    • Author(s)
      T. TAHARA
    • Organizer
      CLEO /QELS 2007
    • Place of Presentation
      Baltimore, USA
    • Year and Date
      20070506-11
  • [Presentation] Temporal vibrations of short-lived excited states observed by femtosecond time-domain spectroscopy2007

    • Author(s)
      T. TAHARA
    • Organizer
      13^<th> International Conference on Time-resolved Vibrational Spectroscopy (TRVS)
    • Place of Presentation
      Freising, Germany
    • Year and Date
      20070319-25
  • [Presentation] Development of new even-order nonlinear spectroscopy and its application to explore novel phenomena at liquid interfaces

    • Author(s)
      T. TAHARA
    • Organizer
      9th Biennial Trombay Symposium on Radiation and Photochemistry(TSRP-2008)
  • [Book] "二光子吸収材料の非線形光学スペクトル測定"高効率二光子吸収材料の開発と応用2011

    • Author(s)
      山口祥一, 細井晴子, 田原太平
    • Total Pages
      61-73
    • Publisher
      シーエムシー出版
  • [Book] "II-2-3-5 偶数次非線形分光"現代界面コロイド科学の事典-シャンプーから宇宙まで2010

    • Author(s)
      田原太平
    • Publisher
      丸善
  • [Book] “Ultrafast Fluorescence Microscopes”, In Biochemical Application of Nonlinear Optical Spectroscopy2009

    • Author(s)
      T. FUJINO, T. TAHARA
    • Total Pages
      Chapter 3, 20 pages (p.53-72)
    • Publisher
      CRC Press
  • [Remarks]

    • URL

      http://www.riken.jp/lab-www/spectroscopy/index.html

URL: 

Published: 2013-07-31  

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