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2012 Fiscal Year Final Research Report

Epigenetic control of meristem function

Planned Research

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Project AreaPlant regulatory systems that control developmental interactions between meristems and lateral organs
Project/Area Number 19060014
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNational Institute of Genetics

Principal Investigator

KAKUTANI Tetsuji  国立遺伝学研究所, 総合遺伝研究系, 教授 (20332174)

Project Period (FY) 2007 – 2012
KeywordsDNA メチル化 / クロマチン
Research Abstract

DNA hypomethylation mutation ddm1 (decrease in DNA methylation) induces several types of developmental defects through heritable effects on other loci. One of them, which we named bonsai, was due to transcriptional repression of the responsible gene, which is associated with local increase in DNA methylation. Genetic analyses revealed that the methylation does not depend on RNAi machinery. We also screened mutants inducing BONSAI methylation and identified a novel factor IBM1 (increase in BONSAI methylation). Genome-wide analyses revealed that IBM1 ensures normal plant development by removing heterochromatin marks from transcribed sequences.

  • Research Products

    (26 results)

All 2012 2011 2010 2009 2008 2007

All Journal Article (14 results) (of which Peer Reviewed: 14 results) Presentation (12 results)

  • [Journal Article] Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata2012

    • Author(s)
      Tsukahara S, Kawabe A, Kobayashi A, Ito T, Aizu T, Shin-i T, Toyoda A, Fujiyama A, Tarutani Y, and Kakutani T
    • Journal Title

      Genes Dev

      Volume: 26 Pages: 705-713

    • Peer Reviewed
  • [Journal Article] RNAi-independent de novo DNA methylation revealed in Arabidosis mutants of chromatin remodeling gene DDM12012

    • Author(s)
      Sasaki T, Kobayashi A, Saze H, and Kakutani T
    • Journal Title

      Plant J

      Volume: 70 Pages: 705-713

    • Peer Reviewed
  • [Journal Article] HMG domain containing SSRPI is required for DNA demethylation and genomic imprinting in Arabidopsis2012

    • Author(s)
      Ikeda Y, Kinoshita Y, Susaki D, Ikeda Y, Iwano M, Takayama S, Higashiyama T, Kakutani T, Kinoshita T
    • Journal Title

      Dev Cell

      Volume: 21 Pages: 589-596

    • Peer Reviewed
  • [Journal Article] Coexistance of trichome variation in anatural plant population:acombined study using ecological and candidate gene approaches2011

    • Author(s)
      Kawagoe T, Shimizu KK, Kakutani T, Kudoh H
    • Journal Title

      PLoS One

      Volume: 6 Pages: e22184

    • Peer Reviewed
  • [Journal Article] Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET12011

    • Author(s)
      To TK, Kim JM, Matsui A, Kurihara Y, Morosawa T, Ishida J, Tanaka M, Endo T, Kakutani T, Toyoda T, Kimura H, Yokoyama S, Shinozaki K, Seki M
    • Journal Title

      PLoS Genet

      Volume: 7 Pages: e1002005

    • Peer Reviewed
  • [Journal Article] Epigenetic variation in the FWA gene within the genus Arabidopsis2011

    • Author(s)
      Fujimoto R, Sasaki T, Kudoh H, Taylor JM, Kakutani T, Dennis ES
    • Journal Title

      Plant J

      Volume: 66 Pages: 831-843

    • Peer Reviewed
  • [Journal Article] Developmental changes in crossover frequency in Arabidopsis2011

    • Author(s)
      Toyota M, Matsuda K, Kakutani T, Terao Morita M, Tasaka M
    • Journal Title

      Plant J

      Volume: 65 Pages: 589-599

    • Peer Reviewed
  • [Journal Article] Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome2010

    • Author(s)
      Inagaki S, Miura-Kamio A, Nakamura Y, Lu F, Cui X, Cao X, Kimura H, Saze H, Kakutani T
    • Journal Title

      EMBO J

      Volume: 29 Pages: 3496-3506

    • Peer Reviewed
  • [Journal Article] Bursts of retrotransposition reproduced in Arabidopsis2009

    • Author(s)
      Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, and Kakutani T
    • Journal Title

      Nature

      Volume: 303 Pages: 423-426

    • Peer Reviewed
  • [Journal Article] An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites2009

    • Author(s)
      Miura A, Nakmura M, Inagaki S, Kobayashi A, Saze H, and Kakutani T
    • Journal Title

      EMBO J

      Volume: 28 Pages: 1078-1086

    • Peer Reviewed
  • [Journal Article] Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin2009

    • Author(s)
      Schoft V, Chumak N, Mosiolek M, Slusarz L, Komnenovic V, Brownfield L, Twell D, Kakutani T and Tamaru H
    • Journal Title

      EMBO Rap

      Volume: 10 Pages: 1078-1086

    • Peer Reviewed
  • [Journal Article] Control of Genic DNA methylation by a jmjC domain-containing Protein in Arabidopsis thaliana2008

    • Author(s)
      Saze H, Shiraishi A, Miura A, and Kakutani T
    • Journal Title

      Soience

      Volume: 319 Pages: 462-465

    • Peer Reviewed
  • [Journal Article] Evolution and control of imprinted FWA genes in the genus Arabidopsis2008

    • Author(s)
      Fujimoto R, Kinoshita Y, Kawabe A, Kinoshita T, Takashima K, Nordborg M, Nasrallah M, Shimizu K, Kudoh H, Kakutani T
    • Journal Title

      PLoS Genet

      Volume: 4 Pages: e1000048

    • Peer Reviewed
  • [Journal Article] Heritable epigenetic mutation of a transposon-flanked gene due to lack of the chromatin-remodeling factor DDM12007

    • Author(s)
      Saze H, and Kakutani T
    • Journal Title

      EMBO J

      Volume: 26 Pages: 3641-3652

    • Peer Reviewed
  • [Presentation] Genetics of DNA methylation ingenes and trasposons inArabidopsis2012

    • Author(s)
      Kakutani, T
    • Organizer
      Cold Spring Harbor Asia Meeting: Plant epigenetics, stress response and evolution
    • Place of Presentation
      Suzhou, China
    • Year and Date
      2012-10-02
  • [Presentation] Genetics of DNA methylation in genes and transposos2012

    • Author(s)
      Kakutani, T
    • Organizer
      The 23rd International Conference on Arabidopsis Research
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2012-07-04
  • [Presentation] Genetics of DNA methylation in genes and transposons in Arabidopsis2012

    • Author(s)
      Kakutani, T
    • Organizer
      The 77^<th> Cold Spring Harbor Symposia on Quantitative Biology: The Biology of Plants
    • Place of Presentation
      Cold Spring Harbor, NY, USA
    • Year and Date
      2012-06-02
  • [Presentation] Genetics of DNA methylation in genes and transposons in Arabidopsis2012

    • Author(s)
      Kakutani, T
    • Organizer
      International Symposium on Epigenetic Regulation in Higher Plants
    • Place of Presentation
      Beijing, China
    • Year and Date
      2012-04-20
  • [Presentation] Genetics of DNA methylation ingenes and transposons2012

    • Author(s)
      Kakutani, T
    • Organizer
      Keystone Symposium on Nuclear Events in Plant Gene Expression and Signaling
    • Place of Presentation
      Taos, NM, USA
    • Year and Date
      2012-03-08
  • [Presentation] Genetics of DNA methylation in genes and transposons2011

    • Author(s)
      Kakutani, T
    • Organizer
      Gordon Research Conference: Epigenetics
    • Place of Presentation
      Stonehill College, MA, USA
    • Year and Date
      2011-08-15
  • [Presentation] Genetics of DNA methylation ingenes and transposons in Arabidopsis2011

    • Author(s)
      Kakutani, T
    • Organizer
      CDB symposium; Epigenetic Landscape in Development and Disease
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      2011-03-04
  • [Presentation] Genetics of DNA methylation in genes and transposons in Arabidopsis2010

    • Author(s)
      Kakautani, T
    • Organizer
      Cold Spring Harbor Asia Meeting: From Plant Biology to Crop Biotechnology
    • Place of Presentation
      Suzhou, China
    • Year and Date
      2010-10-27
  • [Presentation] Genetics of DNA methylation in genes and transposons in Arabidopsis2010

    • Author(s)
      Kakutani, T
    • Organizer
      The 21st International Conference on Arabidopsis Research
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2010-06-08
  • [Presentation] Genetics of DNA methylation ingenes and transposons in Arabidopsis2010

    • Author(s)
      Kakutani, T
    • Organizer
      ASM Conference: Mobile DNA
    • Place of Presentation
      Montreal, Canada
    • Year and Date
      2010-04-27
  • [Presentation] Genetics of DNA methylation in genes and transposons in Arabidopsis thaliana2009

    • Author(s)
      Kakutani, T
    • Organizer
      Gordon Research Conference: Epigenetics
    • Place of Presentation
      Holderness, NH, USA
    • Year and Date
      2009-08-12
  • [Presentation] Genetics of DNA methylation in genes and Transposons in Arabidopsis2009

    • Author(s)
      Kakutani, T
    • Organizer
      EMBL Conference on Chromatin and Epigenetics
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2009-05-15

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Published: 2014-08-29  

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