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2019 Fiscal Year Annual Research Report

ゼニゴケ油体をモデルとしたオルガネラ周期の証明と中心因子の同定

Planned Research

Project AreaIntrinsic periodicity of cellular systems and its modulation as the driving force behind plant development
Project/Area Number 19H05675
Research InstitutionNational Institute for Basic Biology

Principal Investigator

上田 貴志  基礎生物学研究所, 細胞動態研究部門, 教授 (10311333)

Co-Investigator(Kenkyū-buntansha) 近藤 洋平  大学共同利用機関法人自然科学研究機構(新分野創成センター、アストロバイオロジーセンター、生命創成探究, 生命創成探究センター, 助教 (00724444)
河内 孝之  京都大学, 生命科学研究科, 教授 (40202056)
金澤 建彦  基礎生物学研究所, 細胞動態研究部門, 助教 (60802783)
Project Period (FY) 2019-06-28 – 2024-03-31
Keywordsゼニゴケ / 油体 / 油体周期 / 分泌経路
Outline of Annual Research Achievements

油体周期の存在をライブイメージングで実証するべく準備を進めた。油体周期仮説では、分泌経路の方向が細胞膜方向に向いている細胞膜期と油体方向に向いている油体期が相互に転換することを想定している。我々はこれまでに,相同な2種の細胞膜局在タンパク質(MpSYP12BおよびMpSYP13B)がそれぞれ油体膜と細胞膜に局在し,この局在が転写レベルで制御されていることを見いだしている.このことから,MpSYP12Bが油体期に,MpSYP13Bが細胞膜器に発現しているとの仮説を立て,これをプロモーターレポーターアッセイにより検証した.MpSYP12BプロモーターにPEST配列を連結したELucを発現し発光を検出したところ,発光が周期的に増強と減弱を繰り返す様子が観察された.これにより,油体周期の実在が強く支持された.現在MpSYP13Bのプロモータ活性をLucRを用いて検出する系の確立を行っており,今後2色の発光を用いて油体周期を可視化する予定である.
油体周期が発振するタイミングについても重要な知見を得た.mCitrine-MpSYP12BとmRFP-MpSYP13Bを発現する植物を用いて無性芽の長時間タイムラプス観察を行ったところ,MpSYP12Bにより油体膜が認識できるようになる約12時間前に油体母細胞が不等分裂し,娘細胞のうちの小さい細胞に油体が形成される様子が複数回観察された.このことから,油体細胞への運命決定が不等分裂にともなって起こり,この不等分裂が油体周期発振のキューとなっている可能性が考えられる.現在この不等分裂に関わる因子の探索を進めるとともに,近藤と協働して将来油体細胞へと分化する細胞の特徴抽出に取り組んでいる.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

植物育成装置の不具合のため当初の研究計画よりもバイオイメージング解析に時間を要したが、今年度の研究活動により上述の通り順調に成果があがっている。

Strategy for Future Research Activity

今後は引き続きバイオイメージング解析を中心とした油体周期仮説の検証を進めるのに加え、単一油体細胞核トランスクリプトーム解析に向けた条件検討を進める。

  • Research Products

    (35 results)

All 2021 2020 2019 Other

All Int'l Joint Research (3 results) Journal Article (30 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 30 results,  Open Access: 6 results) Presentation (2 results)

  • [Int'l Joint Research] Monash University/The University of Melbourne(オーストラリア)

    • Country Name
      AUSTRALIA
    • Counterpart Institution
      Monash University/The University of Melbourne
  • [Int'l Joint Research] Heidelberg University/Max Planck Institute/Osnabruck University(ドイツ)

    • Country Name
      GERMANY
    • Counterpart Institution
      Heidelberg University/Max Planck Institute/Osnabruck University
  • [Int'l Joint Research] Universidad Nacional del Litoral(アルゼンチン)

    • Country Name
      ARGENTINA
    • Counterpart Institution
      Universidad Nacional del Litoral
  • [Journal Article] Fungal-Type Terpene Synthases in Marchantia polymorpha Are Involved in Sesquiterpene Biosynthesis in Oil Body Cells2021

    • Author(s)
      Takizawa Ryosuke、Hatada Miki、Moriwaki Yuta、Abe Sachika、Yamashita Yuko、Arimitsu Ryoma、Yamato Katsuyuki T、Nishihama Ryuichi、Kohchi Takayuki、Koeduka Takao、Chen Feng、Matsui Kenji
    • Journal Title

      Plant and Cell Physiology

      Volume: 62 Pages: 528~537

    • DOI

      10.1093/pcp/pcaa175

    • Peer Reviewed
  • [Journal Article] Temperature-dependent fasciation mutants provide a link between mitochondrial RNA processing and lateral root morphogenesis2021

    • Author(s)
      Otsuka Kurataka、Mamiya Akihito、Konishi Mineko、Nozaki Mamoru、Kinoshita Atsuko、Tamaki Hiroaki、Arita Masaki、Saito Masato、Yamamoto Kayoko、Hachiya Takushi、Noguchi Ko、Ueda Takashi、Yagi Yusuke、Kobayashi Takehito、Nakamura Takahiro、Sato Yasushi、Hirayama Takashi、Sugiyama Munetaka
    • Journal Title

      eLife

      Volume: 10 Pages: ー

    • DOI

      10.7554/eLife.61611

    • Peer Reviewed / Open Access
  • [Journal Article] Identification of genes involved in Meloidogyne incognita-induced gall formation processes in Arabidopsis thaliana2021

    • Author(s)
      Suzuki Reira、Ueda Takashi、Wada Takuji、Ito Masaki、Ishida Takashi、Sawa Shinichiro
    • Journal Title

      Plant Biotechnology

      Volume: 38 Pages: 1~8

    • DOI

      10.5511/plantbiotechnology.20.0716a

    • Peer Reviewed
  • [Journal Article] Cargo sorting zones in the trans-Golgi network visualized by super-resolution confocal live imaging microscopy in plants2021

    • Author(s)
      Shimizu Yutaro、Takagi Junpei、Ito Emi、Ito Yoko、Ebine Kazuo、Komatsu Yamato、Goto Yumi、Sato Mayuko、Toyooka Kiminori、Ueda Takashi、Kurokawa Kazuo、Uemura Tomohiro、Nakano Akihiko
    • Journal Title

      Nature Communications

      Volume: 12 Pages: ー

    • DOI

      10.1038/s41467-021-22267-0

    • Peer Reviewed / Open Access
  • [Journal Article] Hierarchical modeling of mechano-chemical dynamics of epithelial sheets across cells and tissue2021

    • Author(s)
      Asakura Yoshifumi、Kondo Yohei、Aoki Kazuhiro、Naoki Honda
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 4069

    • DOI

      10.1038/s41598-021-83396-6

    • Peer Reviewed
  • [Journal Article] Oil Body Formation in Marchantia polymorpha Is Controlled by MpC1HDZ and Serves as a Defense against Arthropod Herbivores2020

    • Author(s)
      Romani Facundo、Banic Elizabeta、Florent Stevie N.、Kanazawa Takehiko、Goodger Jason Q.D.、Mentink Remco A.、Dierschke Tom、Zachgo Sabine、Ueda Takashi、Bowman John L.、Tsiantis Miltos、Moreno Javier E.
    • Journal Title

      Current Biology

      Volume: 30 Pages: 2815~2828.e8

    • DOI

      10.1016/j.cub.2020.05.081

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Characterization of ancestral myosin XI from Marchantia polymorpha by heterologous expression in Arabidopsis thaliana2020

    • Author(s)
      Duan Zhongrui、Tanaka Misato、Kanazawa Takehiko、Haraguchi Takeshi、Takyu Akiko、Era Atsuko、Ueda Takashi、Ito Kohji、Tominaga Motoki
    • Journal Title

      The Plant Journal

      Volume: 104 Pages: 460~473

    • DOI

      10.1111/tpj.14937

    • Peer Reviewed
  • [Journal Article] Longin R-SNARE is retrieved from the plasma membrane by ANTH domain-containing proteins in Arabidopsis2020

    • Author(s)
      Fujimoto Masaru、Ebine Kazuo、Nishimura Kohji、Tsutsumi Nobuhiro、Ueda Takashi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Pages: 25150~25158

    • DOI

      10.1073/pnas.2011152117

    • Peer Reviewed
  • [Journal Article] The Arabidopsis V-ATPase is localized to the TGN/EE via a seed plant-specific motif2020

    • Author(s)
      Lupanga Upendo、Rohrich Rachel、Askani Jana、Hilmer Stefan、Kiefer Christiane、Krebs Melanie、Kanazawa Takehiko、Ueda Takashi、Schumacher Karin
    • Journal Title

      eLife

      Volume: 9 Pages: ー

    • DOI

      10.7554/eLife.60568

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The liverwort oil body is formed by redirection of the secretory pathway2020

    • Author(s)
      Kanazawa Takehiko、Morinaka Hatsune、Ebine Kazuo、Shimada Takashi L.、Ishida Sakiko、Minamino Naoki、Yamaguchi Katsushi、Shigenobu Shuji、Kohchi Takayuki、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Nature Communications

      Volume: 11 Pages: ー

    • DOI

      10.1038/s41467-020-19978-1

    • Peer Reviewed / Open Access
  • [Journal Article] Purification and Interaction Analysis of a Plant-Specific RAB5 Effector by In Vitro Pull-Down Assay2020

    • Author(s)
      Ito Emi、Choi Seung-won、Ueda Takashi
    • Journal Title

      Methods in Molecular Biology

      Volume: 2177 Pages: 183~197

    • DOI

      10.1007/978-1-0716-0767-1_15

    • Peer Reviewed
  • [Journal Article] Role of Autophagy in Male Reproductive Processes in Land Plants2020

    • Author(s)
      Norizuki Takuya、Minamino Naoki、Ueda Takashi
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: ー

    • DOI

      10.3389/fpls.2020.00756

    • Peer Reviewed / Open Access
  • [Journal Article] Improvement of Phycocyanobilin Synthesis for Genetically Encoded Phytochrome-Based Optogenetics2020

    • Author(s)
      Uda Youichi、Miura Haruko、Goto Yuhei、Yamamoto Kei、Mii Yusuke、Kondo Yohei、Takada Shinji、Aoki Kazuhiro
    • Journal Title

      ACS Chemical Biology

      Volume: 15 Pages: 2896~2906

    • DOI

      10.1021/acschembio.0c00477

    • Peer Reviewed
  • [Journal Article] Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin2020

    • Author(s)
      Montgomery Sean A.、Tanizawa Yasuhiro、Galik Bence、... Takayuki Kohchi (25人中13人目) et al.
    • Journal Title

      Current Biology

      Volume: 30 Pages: 573~588.e7

    • DOI

      10.1016/j.cub.2019.12.015

    • Peer Reviewed / Open Access
  • [Journal Article] Positional cues regulate dorsal organ formation in the liverwort Marchantia polymorpha2020

    • Author(s)
      Suzuki Hidemasa、Harrison C. Jill、Shimamura Masaki、Kohchi Takayuki、Nishihama Ryuichi
    • Journal Title

      Journal of Plant Research

      Volume: 133 Pages: 311~321

    • DOI

      10.1007/s10265-020-01180-5

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Design principles of a minimal auxin response system2020

    • Author(s)
      Kato Hirotaka、Mutte Sumanth K.、Suzuki Hidemasa、Crespo Isidro、Das Shubhajit、Radoeva Tatyana、Fontana Mattia、Yoshitake Yoshihiro、Hainiwa Emi、van den Berg Willy、Lindhoud Simon、Ishizaki Kimitsune、Hohlbein Johannes、Borst Jan Willem、Boer D. Roeland、Nishihama Ryuichi、Kohchi Takayuki、Weijers Dolf
    • Journal Title

      Nature Plants

      Volume: 6 Pages: 473~482

    • DOI

      10.1038/s41477-020-0662-y

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Induction of Multichotomous Branching by CLAVATA Peptide in Marchantia polymorpha2020

    • Author(s)
      Hirakawa Yuki、Fujimoto Toko、Ishida Sakiko、Uchida Naoyuki、Sawa Shinichiro、Kiyosue Tomohiro、Ishizaki Kimitsune、Nishihama Ryuichi、Kohchi Takayuki、Bowman John L.
    • Journal Title

      Current Biology

      Volume: 30 Pages: 3833~3840.e4

    • DOI

      10.1016/j.cub.2020.07.016

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Deep Imaging Analysis in VISUAL Reveals the Role of YABBY Genes in Vascular Stem Cell Fate Determination2020

    • Author(s)
      Nurani Alif Meem、Ozawa Yasuko、Furuya Tomoyuki、Sakamoto Yuki、Ebine Kazuo、Matsunaga Sachihiro、Ueda Takashi、Fukuda Hiroo、Kondo Yuki
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 255~264

    • DOI

      10.1093/pcp/pcaa002

    • Peer Reviewed
  • [Journal Article] Cytokinin Signaling Is Essential for Organ Formation in Marchantia polymorpha2019

    • Author(s)
      Aki Shiori S、Mikami Tatsuya、Naramoto Satoshi、Nishihama Ryuichi、Ishizaki Kimitsune、Kojima Mikiko、Takebayashi Yumiko、Sakakibara Hitoshi、Kyozuka Junko、Kohchi Takayuki、Umeda Masaaki
    • Journal Title

      Plant and Cell Physiology

      Volume: 60 Pages: 1842~1854

    • DOI

      10.1093/pcp/pcz100

    • Peer Reviewed
  • [Journal Article] Cytokinin signaling coordinates development of diverse organs in Marchantia polymorpha2019

    • Author(s)
      Aki Shiori S.、Nishihama Ryuichi、Kohchi Takayuki、Umeda Masaaki
    • Journal Title

      Plant Signaling & Behavior

      Volume: 14 Pages: 1668232~1668232

    • DOI

      10.1080/15592324.2019.1668232

    • Peer Reviewed
  • [Journal Article] The RopGEF KARAPPO Is Essential for the Initiation of Vegetative Reproduction in Marchantia polymorpha2019

    • Author(s)
      Hiwatashi Takuma、...Ueda Takash(20番目)、Kohchi Takayuki(22番目)、Ishizaki Kimitsune
    • Journal Title

      Current Biology

      Volume: 29 Pages: 3525~3531.e7

    • DOI

      10.1016/j.cub.2019.08.071

    • Peer Reviewed
  • [Journal Article] An Early Arising Role of the MicroRNA156/529-SPL Module in Reproductive Development Revealed by the Liverwort Marchantia polymorpha2019

    • Author(s)
      Tsuzuki Masayuki、Futagami Kazutaka、Shimamura Masaki、Inoue Chikako、Kunimoto Kan、Oogami Takashi、Tomita Yuki、Inoue Keisuke、Kohchi Takayuki、Yamaoka Shohei、Araki Takashi、Hamada Takahiro、Watanabe Yuichiro
    • Journal Title

      Current Biology

      Volume: 29 Pages: 3307~3314.e5

    • DOI

      10.1016/j.cub.2019.07.084

    • Peer Reviewed
  • [Journal Article] Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones2019

    • Author(s)
      D’Ippolito Robert Anthony、Minamino Naoki、Rivera-Casas Ciro、Cheema Manjinder S.、Bai Dina L.、Kasinsky Harold E.、Shabanowitz Jeffrey、Eirin-Lopez Jose M.、Ueda Takashi、Hunt Donald F.、Ausi? Juan
    • Journal Title

      Journal of Biological Chemistry

      Volume: 294 Pages: 16364~16373

    • DOI

      10.1074/jbc.RA119.010316

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis2019

    • Author(s)
      Shimada Takashi L.、Shimada Tomoo、Okazaki Yozo、Higashi Yasuhiro、Saito Kazuki、Kuwata Keiko、Oyama Kaori、Kato Misako、Ueda Haruko、Nakano Akihiko、Ueda Takashi、Takano Yoshitaka、Hara-Nishimura Ikuko
    • Journal Title

      Nature Plants

      Volume: 5 Pages: 1154~1166

    • DOI

      10.1038/s41477-019-0537-2

    • Peer Reviewed
  • [Journal Article] GEMMA CUP-ASSOCIATED MYB1, an Ortholog of Axillary Meristem Regulators, Is Essential in Vegetative Reproduction in Marchantia?polymorpha2019

    • Author(s)
      Yasui Yukiko、Tsukamoto Shigeyuki、Sugaya Tomomi、Nishihama Ryuichi、Wang Quan、Kato Hirotaka、Yamato Katsuyuki T.、Fukaki Hidehiro、Mimura Tetsuro、Kubo Hiroyoshi、Theres Klaus、Kohchi Takayuki、Ishizaki Kimitsune
    • Journal Title

      Current Biology

      Volume: 29 Pages: 3987~3995.e5

    • DOI

      10.1016/j.cub.2019.10.004

    • Peer Reviewed
  • [Journal Article] A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs2019

    • Author(s)
      Naramoto Satoshi、Jones Victor Arnold Shivas、Trozzi Nicola、Sato Mayuko、Toyooka Kiminori、Shimamura Masaki、Ishida Sakiko、Nishitani Kazuhiko、Ishizaki Kimitsune、Nishihama Ryuichi、Kohchi Takayuki、Dolan Liam、Kyozuka Junko
    • Journal Title

      PLOS Biology

      Volume: 17 Pages: e3000560

    • DOI

      10.1371/journal.pbio.3000560

    • Peer Reviewed
  • [Journal Article] Enrichment of Phosphatidylinositol 4,5-Bisphosphate in the Extra-Invasive Hyphal Membrane Promotes Colletotrichum Infection of Arabidopsis thaliana2019

    • Author(s)
      Shimada Takashi L、Betsuyaku Shigeyuki、Inada Noriko、Ebine Kazuo、Fujimoto Masaru、Uemura Tomohiro、Takano Yoshitaka、Fukuda Hiroo、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Plant and Cell Physiology

      Volume: 60 Pages: 1514~1524

    • DOI

      10.1093/pcp/pcz058

    • Peer Reviewed
  • [Journal Article] Marchantia polymorpha, a New Model Plant for Autophagy Studies2019

    • Author(s)
      Norizuki Takuya、Kanazawa Takehiko、Minamino Naoki、Tsukaya Hirokazu、Ueda Takashi
    • Journal Title

      Frontiers in Plant Science

      Volume: 10 Pages: 935

    • DOI

      10.3389/fpls.2019.00935

    • Peer Reviewed
  • [Journal Article] Regulation of the Poly(A) Status of Mitochondrial mRNA by Poly(A)-Specific Ribonuclease Is Conserved among Land Plants2019

    • Author(s)
      Kanazawa Mai、Ikeda Yoko、Nishihama Ryuichi、Yamaoka Shohei、Lee Nam-Hee、Yamato Katsuyuki T、Kohchi Takayuki、Hirayama Takashi
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 470~480

    • DOI

      10.1093/pcp/pcz212

    • Peer Reviewed
  • [Journal Article] Regulation of Photosynthetic Carbohydrate Metabolism by a Raf-Like Kinase in the Liverwort Marchantia polymorpha2019

    • Author(s)
      Koide Eri、Suetsugu Noriyuki、Iwano Megumi、Gotoh Eiji、Nomura Yuko、Stolze Sara Christina、Nakagami Hirofumi、Kohchi Takayuki、Nishihama Ryuichi
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 631~643

    • DOI

      10.1093/pcp/pcz232

    • Peer Reviewed
  • [Presentation] How Plants acquired new organelles -Lessons from Marchantia2020

    • Author(s)
      Takashi Ueda
    • Organizer
      International Webinar Series: From Cellular dynamics to Morphology
  • [Presentation] Organelle functions and membrane trafficking in plant cells2019

    • Author(s)
      Takashi Ueda
    • Organizer
      EMBO practical course

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Published: 2021-12-27  

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