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2012 Fiscal Year Final Research Report

Development of time-resolved methods for detection of fluctuations on energy and structure and for elucidating reaction mechanism

Planned Research

Project AreaMolecular Science of Fluctuations toward Biological Functions
Project/Area Number 20107003
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionKyoto University

Principal Investigator

TERAZIMA Masahide  京都大学, 大学院・理学研究科, 教授 (00188674)

Project Period (FY) 2008 – 2012
Keywords揺らぎ / 生体分子 / 反応 / 機能
Research Abstract

Relationship between fluctuation and biological function has been elucidated by the time-resolved transient grating method, which has been developed in our group. By using this technique, we successfully discovered that the flexible loop region of a blue light sensor FKF1 is important for the function. The volume compressibilities of reaction intermediates of PixD were measured and demonstrated that the fluctuation is indeed enhanced during the reaction. Time-resolve heat capacities and thermal expansion coefficients were also measured for reaction intermediates which were directly related with the function. A new analytical method of a single molecular detection has been developed for obtaining high time resolved information of the fluctuation.

  • Research Products

    (14 results)

All 2012 2011 2010 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (4 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Time-Resolved Tracking of Interprotein Signal Transduction: Synechocystis PixD-PixE complex as a Sensor of Light Intensity2012

    • Author(s)
      K. Tanaka, Y. Nakasone, K. Okajima, M. Ikeuchi, S. Tokutomi, M. Terazima
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134 Pages: 8336-8339

    • DOI

      DOI:10.1021/ja301540r

    • Peer Reviewed
  • [Journal Article] Light-induced conformational change and product release in DNA repair by (6-4) photolyase2011

    • Author(s)
      M.Kondoh, K.Hitomi, J.Yamamoto, T.Todo, S.Iwai, E.D.Getzoff, M.Terazima
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 133 Pages: 2183-2191

    • DOI

      10.1021/ja107691w

    • Peer Reviewed
  • [Journal Article] Photoreactions of Aureochrome-12011

    • Author(s)
      T.Toyooka, O.Hisatomi, F.Takahashi, H.Kataoka, M.Terazima
    • Journal Title

      Biophys.J.

      Volume: 100 Pages: 2801-2809

    • DOI

      10.1016/j.bpj.2011.02.043

    • Peer Reviewed
  • [Journal Article] Light-Induced Conformational Change and Transient Dissociation Reaction of the BLUF Photoreceptor Synechocystis PixD (Slr1694)2011

    • Author(s)
      K.Tanaka, Y.Nakasone, K.Okajima, M.Ikeuchi, S.Tokutomi, M.Terazima
    • Journal Title

      J.Mol.Biol.

      Volume: 409 Pages: 773-785

    • DOI

      10.1016/j.jmb.2011.04.032

    • Peer Reviewed
  • [Journal Article] Transient dissociation of the transducer protein from Anabaena sensory rhodopsin concomitant with formation of the M state produced upon photoactivation2011

    • Author(s)
      M.Kondoh, K.Inoue, J.Sasaki, J.Spudich, M.Terazima
    • Journal Title

      J.Am.Chem.Soc.

      Volume: 133 Pages: 13406-13412

    • DOI

      10.1021/ja202329u

    • Peer Reviewed
  • [Journal Article] A way to sense light intensity: multiple-excitation of the BLUF photoreceptor TePixD suppresses conformational change2011

    • Author(s)
      K.Tanaka, Y. Nakasone, K.Okajima, M. Ikeuchi, S. Tokutomi, M. Terazima
    • Journal Title

      FEBS Lett

      Volume: 585 Pages: 786-790

    • DOI

      DOI:10.1016/j.febslet.2011.02.003

    • Peer Reviewed
  • [Journal Article] Temperature sensitive reaction of a photosensor protein YcgF: Possibility of a role of temperature sensor2010

    • Author(s)
      Y.Nakasone, T. Ono, A. Ishii, S.Masuda, M. Terazima
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 2288-2296

    • DOI

      DOI:10.1021/bi902121z

    • Peer Reviewed
  • [Presentation] 光センサー蛋白質フォトトロピンの活性状態における構造揺らぎの評価2012

    • Author(s)
      中曽根祐介,岡島公司,徳富哲,寺嶋正秀
    • Organizer
      分子科学討論会
    • Place of Presentation
      東京
    • Year and Date
      20120918-21
  • [Presentation] Time-resolved detection of protein-protein interaction2011

    • Author(s)
      M.Terazima
    • Organizer
      8th European Biophysics Congress
    • Place of Presentation
      Budapest, Hungary
    • Year and Date
      20110823-27
  • [Presentation] Spectrally silent photochemistry is important for biological reactions2011

    • Author(s)
      M.Terazima
    • Organizer
      Gordon Research Conference on Photochemistry
    • Place of Presentation
      Easton, USA
    • Year and Date
      20110710-15
  • [Presentation] A strange reaction of a photosensor protein: PixD2011

    • Author(s)
      M.Terazima
    • Organizer
      Third Korea-Japan Seminars on Biomolecular Sciences
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      20110226-0301
  • [Book] 揺らぎと生体機能総論, 揺らぎと生体機能、寺嶋正秀監修、メディカルバイオ別冊2010

    • Author(s)
      寺嶋正秀
    • Total Pages
      6-9
    • Publisher
      オーム社
  • [Book] 生体分子の反応中の揺らぎをとらえる分子科学手法, 揺らぎと生体機能、寺嶋正秀監修、メディカルバイオ別冊2010

    • Author(s)
      寺嶋正秀
    • Total Pages
      10-16
    • Publisher
      オーム社
  • [Remarks]

    • URL

      http://kuchem.kyoto-u.ac.jp/hikari/

URL: 

Published: 2014-08-29  

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