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2012 Fiscal Year Final Research Report

Deformation ofwater originated byasolutemolecuIeand response from water

Planned Research

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Project AreaWater plays a key role in ATP hydrolysis and ATP-driven functions of proteins
Project/Area Number 20118007
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionKyushu University

Principal Investigator

AKIYAMA Ryo  九州大学, 大学院・理学研究院, 准教授 (60363347)

Co-Investigator(Kenkyū-buntansha) YOSHIMORI Akira  九州大学, 大学院・理学研究院, 准教授 (90260588)
TOKUNAGA Ken  工学院大学, 基礎・教養教育部門, 助教 (30467873)
KUBOTA Yoji  九州大学, 大学院・理学研究院, 特任助教 (20639033)
Project Period (FY) 2008 – 2012
Keywords化学物理 / 生物物理 / 液体論 / 分子認識 / 多成分系の熱力学
Research Abstract

Existence of hyper-mobile water, whose motion is faster than that of bulk water, has been expected on the basis of the dielectric spectroscopy for the aqueous solution of molecular motors driven by ATP hydrolysis. The relation between the function of molecular motor and the hyper-mobile water has been discussed. We calculated the rotational and the dielectric time correlation functions of water around an ion on the basis of the trajectory of molecular dynamics simulation. The results showed that the water near by the ion gave fast dielectric relaxation although the rotational relaxation was slow. A new picture for hyper-mobile water was proposed. And we also calculated strong attractive interaction between two like-charged macroions immersed in electrolyte solution. The relation between ATP hydrolysis and treadmill motion of actins was discussed.

  • Research Products

    (31 results)

All 2013 2012 2011 2010 2009 2008

All Journal Article (15 results) (of which Peer Reviewed: 13 results) Presentation (14 results) Book (2 results)

  • [Journal Article] 誘電緩和測定で見られる速い緩和とイオンの水和描像2013

    • Author(s)
      久保田陽二
    • Journal Title

      分子シミュレーション研究会会誌アンサンブル

      Volume: 16(掲載決定) Pages: 未定

  • [Journal Article] 分子スケールの外場で測る誘電率-溶質分子周囲の水が作り出すポテンシャル揺らぎ-2013

    • Author(s)
      久保田陽二、秋山良
    • Journal Title

      分子シミュレーション研究会会誌アンサンブル

      Volume: 15 Pages: 33-41

  • [Journal Article] Tinle-Dependent Density Functional Theory of Polarization Relaxation under External Field2013

    • Author(s)
      Yuichiro Uematsu and Akira Yoshimori
    • Journal Title

      Journal of Physical Society of Japan

      Volume: 82 Pages: 013001-1-4

    • Peer Reviewed
  • [Journal Article] Molecular Dynamics Study of Fast Dielectric Relaxation of Water around a Molecular-Sized Ion2012

    • Author(s)
      Y. Kubota, A. Yoshimori, N. Matubayasi, M. Suzuki, and R. Akiyanla
    • Journal Title

      The Journal of Chenlical Physiscs

      Volume: 137 Pages: 224502-1-4

    • Peer Reviewed
  • [Journal Article] Model dependence of the electrostatic response to a molecular-sized ion in water2012

    • Author(s)
      Y. Kubota and R. Akiyama
    • Journal Title

      Journal of Physical Society of Japan Supplement

      Volume: 81 Pages: SAO 12-1-6

    • Peer Reviewed
  • [Journal Article] Perturbation Theory of Large-Particle Diffusion2012

    • Author(s)
      Yuko Inayoshi, Akira Yoshimori, and Ryo Akiyama
    • Journal Title

      Journal of Physical Society of Japan

      Volume: 81 Pages: 114603-1-10

    • Peer Reviewed
  • [Journal Article] A Perturbation Theory for Friction of a Large Particle Immersed in a Binary Solvent2012

    • Author(s)
      Y. Nakamura, A. Yoshimori, and R. Akiyama
    • Journal Title

      Journal of Physical Society of Japan Supplement

      Volume: 81 Pages: SAO26-1-7

    • Peer Reviewed
  • [Journal Article] A Model Study of the Conversion of Energy froma Chemical Reaction into Motion through a Solvation Motor2012

    • Author(s)
      K.Tokunaga, and R. Akiyama
    • Journal Title

      Journal of Physical Society of Japan Supplement

      Volume: 81 Pages: SAO19-1-9

    • Peer Reviewed
  • [Journal Article] Model Dependence of the Electrostatic Response to a Molecular-Sized Ion in Water2011

    • Author(s)
      Y. Kubota and R. Akivama
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 2 Pages: 1588-1592

    • Peer Reviewed
  • [Journal Article] An Integral Equation Study of Reentrant Behavior in Attractive Interactions between Like-Charged Macroions Immersed in an Electrolyte Solution2011

    • Author(s)
      R. Akiyama, and R. Sakata
    • Journal Title

      Journal of Physical Society of Japan

      Volume: 80 Pages: 123602-1-4

    • Peer Reviewed
  • [Journal Article] 青少年のためのAsakura-Oosawa理論入門2011

    • Author(s)
      秋山良
    • Journal Title

      生物物理

      Volume: 51 Pages: 36-40

    • Peer Reviewed
  • [Journal Article] Studies of liquid-solid transitions using a thermodynamic perturbation method with modified weighted density approximation2011

    • Author(s)
      A. Suematsu, A. Yoshimori, T. Odagaki
    • Journal Title

      Journal of Physical Society of Japan

      Volume: 80 Pages: 025001-1-2

    • Peer Reviewed
  • [Journal Article] Time Dependent Density Functional Theory Formulated by the Interaction-Site model2011

    • Author(s)
      A. Yoshimori
    • Journal Title

      Journal of Physical Society of Japan

      Volume: 80 Pages: 034801-1-8

    • Peer Reviewed
  • [Journal Article] Adsorption of xenon on a protein arising from the translational motion of solvent nlolecules2010

    • Author(s)
      R. Akiyama, Y. Karino, H. Obama, A. Yoshifuku
    • Journal Title

      Physical Chemistry and Chemical Physics

      Volume: 12 Pages: 3096-3101

    • Peer Reviewed
  • [Journal Article] Effect of Solvent Granularity on the Activity Coefficient of Macromolecules2009

    • Author(s)
      Y. Karino, R. Akiyama
    • Journal Title

      Chemical Physics Letter

      Volume: 478 Pages: 180-184

    • Peer Reviewed
  • [Presentation] Hydration dynamics and dielectric relaxation of water around an ion2013

    • Author(s)
      R. Akiyama
    • Organizer
      Symposium on Hydration and ATP Energy 2013
    • Place of Presentation
      岩沼屋, Sendai, Japan
    • Year and Date
      2013-03-08
  • [Presentation] Fast dielectric relaxation of water around an ion: Molecular dynamics study2013

    • Author(s)
      Y. Kubota
    • Organizer
      The 17th East Asian Workshop on Chemical Dynamics
    • Place of Presentation
      九州大学西新プラザ, Fukuoka, Japan
    • Year and Date
      2013-01-31
  • [Presentation] Slow Rotational and Fast Dielectric Relaxation of Water around an lon:AMolecular Dynamics Study2013

    • Author(s)
      Y. Kubota, A. Yoshimori, N. Matubayasi, M. Suzuki, and R. Akiyama
    • Organizer
      4th France-Japan Joint Seminar
    • Place of Presentation
      理研播磨, Koto, Japan
    • Year and Date
      2013-01-08
  • [Presentation] Molecular dynamics study in fast dielectric relaxation of water around an ion2012

    • Author(s)
      Y. Kubota, A. Yoshimori, N. Matubayasi, M. Suzuki, and R. Akiyama
    • Organizer
      2012 Gordon Research Conference on Water and Aqueous Solutions
    • Place of Presentation
      Holderness School Holderness ,NH, USA
    • Year and Date
      20120813-14
  • [Presentation] 分子動力学シミュレーションで"観測"されたハイパーモバイル水2012

    • Author(s)
      秋山良
    • Organizer
      合同公開シンポジウムゆらぎと水- 生命のエネルギーと機能の分子機構を探る
    • Place of Presentation
      大阪ガーデンパレス, 大阪
    • Year and Date
      2012-09-15
  • [Presentation] 朝倉-大沢理論から見渡す生体分子間の実効相互作用2012

    • Author(s)
      秋山良
    • Organizer
      2012年生物物理若手の会夏の学校
    • Place of Presentation
      支笏湖ユースホステル, 千歳
    • Year and Date
      2012-09-02
  • [Presentation] 同符号のマクロイオン間の強い引力とリエントラントな電解質濃度依存性2012

    • Author(s)
      秋山良
    • Organizer
      低次元系光機能材料研究会」第1回サマーセミナー(兼西日本ナノシート研究会第1回シンポジウム
    • Place of Presentation
      日,福岡工業大学, 福岡
    • Year and Date
      2012-07-08
  • [Presentation] Fast Dielectric Relaxation of Water around an Ion2012

    • Author(s)
      Y. Kubota, A. Yoshimori, N. Matubayasi, M. Suzuki, and R. Akiyama
    • Organizer
      6th Mini-Symposiumon Liquids
    • Place of Presentation
      九州大学, 福岡
    • Year and Date
      2012-06-23
  • [Presentation] 溶液化学と非平衡物理2011

    • Author(s)
      吉森明
    • Organizer
      第34回溶液化学シンポジウム
    • Place of Presentation
      名古屋大学, 名古屋
    • Year and Date
      2011-11-15
  • [Presentation] Attractive interaction between like-charged macromolecules in an electrolyte solution and motion of amoeba2011

    • Author(s)
      R. Akiyama
    • Organizer
      Department Seminar
    • Place of Presentation
      Virginia Commonwealth University, Richmond, Virginia, USA
    • Year and Date
      2011-03-31
  • [Presentation] 電子雲が作る共有結合とイオン雲が作る"共有結合"2010

    • Author(s)
      秋山良
    • Organizer
      九重分光学関連夏季セミナー
    • Place of Presentation
      九州地区九重共同研修所
    • Year and Date
      2010-07-30
  • [Presentation] 対イオンがつくる同符号マクロイオン間の"共有結合"とアクチン分子間相互作用:HNC-OZ方程式の解2009

    • Author(s)
      秋山良
    • Organizer
      九州工業大学 情報工学部生命情報工学科学科講演会
    • Place of Presentation
      九州工業大学(飯塚)
    • Year and Date
      2009-12-10
  • [Presentation] タンパク質分子間相互作用における水の並進運動効果と熱力学量2008

    • Author(s)
      秋山良
    • Organizer
      生物物理学会第46回年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Year and Date
      2008-12-03
  • [Presentation] Yamaguchi theory and Van der Waals picture2008

    • Author(s)
      A. Yoshimori
    • Organizer
      2^<nd> Mini-Synlposium on Liquids
    • Place of Presentation
      九州大学(福岡)
    • Year and Date
      2008-10-03
  • [Book] Handbook on Fullerene: Synthesis, Properties and Applications (Chapter 17:Computational Design of New Organic Materials:Properties and Utility of Methylene-Bridged Fullerenes C60)2012

    • Author(s)
      Ken Tokunaga
    • Total Pages
      548-568
    • Publisher
      Nova Science
  • [Book] Hydrogenation(Chapter l3:Hydrogenation of Fullerene C60:Material Design of Organic Semiconductors by Computation)2012

    • Author(s)
      Ken Tokunaga
    • Total Pages
      326-343
    • Publisher
      InTech

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Published: 2014-08-29  

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