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2013 Fiscal Year Final Research Report

Structural analyses of the metastable ligand-receptor interactions

Planned Research

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Project AreaIntegrative understanding of biological processes mediated by transient macromolecular complexes; New technology for visualizing physiologically metastable states.
Project/Area Number 21121002
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionThe University of Tokyo

Principal Investigator

SHIMADA Ichio  東京大学, 薬学研究科(研究院), 教授 (70196476)

Co-Investigator(Kenkyū-buntansha) JEE Jungoo  首都大学東京, 戦略研究センター, 准教授 (50381554)
KAINOSHO Masatsune  首都大学東京, 戦略研究センター, 客員教授 (20137029)
Co-Investigator(Renkei-kenkyūsha) OSAWA Masanori  東京大学, 大学院薬学系研究科, 講師 (60361606)
UEDA Takumi  東京大学, 大学院薬学系研究科, 助教 (20451859)
NISHIDA Noritaka  東京大学, 大学院薬学系研究科, 助教 (50456183)
KAINOSHO Masatsune  首都大学東京, 戦略研究センター, 教授 (20137029)
Project Period (FY) 2009-07-23 – 2014-03-31
Keywords核磁気共鳴法 / 膜タンパク質 / 相互作用 / 過渡的複合体
Research Abstract

It has been considered that the transient molecular complexes play an important role in many biological processes inside the living cells. In this project, we aimed to establish the NMR methodologies, which can observe the NMR signals from such short lived states, and reconstitute such state by mimicking physiological environments. We applied these methods to the actual biologically important systems, including chemokine-chemokine receptors, the cell adhesion molecule CD44, and the photosynthesis complex, and successfully obtained the structural information of the transiently formed complex of those molecules, which are related to their function.

  • Research Products

    (24 results)

All 2013 2012 2010 2009 Other

All Journal Article (10 results) Presentation (13 results) Remarks (1 results)

  • [Journal Article] A Gel-Encapsulated Bioreactor System for NMR Studies of Protein-Protein Interactions in Living Mammalian Cells2013

    • Author(s)
      Kubo S, Nishida N, Udagawa Y, Takarada O, Ogino S, Shimada I
    • Journal Title

      Angew Chem Int Ed Engl.

      Volume: 52(4) Pages: 1208-11

    • DOI

      10.1002/anie.201207243

  • [Journal Article] Structural basis for modulation of gating property of G protein-gated inwardly rectifying potassium ion channel (GIRK) by i/o-family G protein α subunit (Gαi/o)2012

    • Author(s)
      Mase Y, Yokogawa M, Osawa M, Shimada I
    • Journal Title

      J Biol Chem.

      Volume: 287(23) Pages: 19537-49

    • DOI

      10.1074/jbc.M112.353888

  • [Journal Article] Efficacy of the β2-adrenergic receptor is determined by conformational equilibrium in the transmembrane region2012

    • Author(s)
      Kofuku Y, Ueda T, Okude J, Shiraishi Y, Kondo K, Maeda M, Tsujishita H, Shimada I
    • Journal Title

      Nat Commun.

      Volume: 3 Pages: 1045

    • DOI

      10.1038/ncomms2046

  • [Journal Article] Structural basis of efficient electron transport between photosynthetic membrane proteins and plastocyanin in spinach revealed using nuclear magnetic resonance2012

    • Author(s)
      Ueda T, Nomoto N, Koga M, Ogasa H, Ogawa Y, Matsumoto M, Stampoulis P, Sode K, Terasawa H, Shimada I
    • Journal Title

      Plant Cell.

      Volume: 24(10) Pages: 4173-86

    • DOI

      10.1105/tpc.112.102517.

  • [Journal Article] Structural basis underlying the dual gate properties of KcsA2010

    • Author(s)
      Imai S, Osawa M, Takeuchi K, Shimada I
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 107(14) Pages: 6216-21

    • DOI

      10.1073/pnas.0911270107

  • [Journal Article] NMR analyses of the interaction between CCR5 and its ligand using functional reconstitution of CCR5 in lipid bilayers2010

    • Author(s)
      Yoshiura C, Kofuku Y, Ueda T, Mase Y, Yokogawa M, Osawa M, Terashima Y, Matsushima K, Shimada I
    • Journal Title

      J Am Chem Soc.

      Volume: 132(19) Pages: 6768-77

    • DOI

      10.1021/ja100830f

  • [Journal Article] Theoretical analyses of the transferred cross-saturation method, Epub 20102010

    • Author(s)
      Matsumoto M, Ueda T, Shimada I
    • Journal Title

      J Magn Reson.

      Volume: 205(1) Pages: 114-24

    • DOI

      10.1016/j.jmr.2010.04.011

  • [Journal Article] Two-state conformations in the hyaluronan-binding domain regulate CD44 adhesiveness under flow condition2010

    • Author(s)
      Ogino S, Nishida N, Umemoto R, Suzuki M, Takeda M, Terasawa H, Kitayama J, Matsumoto M, Hayasaka H, Miyasaka M, Shimada I
    • Journal Title

      Structure.

      Volume: 18(5) Pages: 649-56

    • DOI

      10.1016/j.str.2010.02.010

  • [Journal Article] Observation of NMR signals from proteins introduced into living mammalian cells by reversible membrane permeabilization using a pore-forming toxin, Streptolysin O2009

    • Author(s)
      Ogino S, Kubo S, Umemoto R, Huang S, Nishida N, Shimada I
    • Journal Title

      J Am Chem Soc.

      Volume: 131(31) Pages: 10834-5

    • DOI

      10.1021/ja904407w

  • [Journal Article] Structural Basis of the Interaction between Chemokine Stromal Cell-derived Factor-1/CXCL12 and Its G-protein-coupled Receptor CXCR42009

    • Author(s)
      Kofuku Y, Yoshiura C, Ueda T, Terasawa H, Hirai T, Tominaga S, Hirose M, Maeda Y, Takahashi H, Terashima Y, Matsushima K, Shimada I
    • Journal Title

      J Biol Chem.

      Volume: 284(50) Pages: 35240-50

    • DOI

      10.1074/jbc.M109.024851

  • [Presentation] NMRを用いた高分子量タンパク質複合体の相互作用解析法の開発と応用2013

    • Author(s)
      嶋田一夫
    • Organizer
      ワークショップ「原理まで遡って再確認する核磁気共鳴法の実力」第36回日本分子生物学会年会
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2013-12-03
  • [Presentation] Functional Equilibrium of GPCR2013

    • Author(s)
      嶋田一夫
    • Organizer
      5th Asia-Pacific NMR Symposium in conjunction with ANZNAG2013
    • Place of Presentation
      Brisbane, Australia
    • Year and Date
      2013-10-24
  • [Presentation] Functional Equilibrium of GPCR2013

    • Author(s)
      嶋田一夫
    • Organizer
      Symposium "Perspectives of NMR in drug discovery"
    • Place of Presentation
      Novartis, Basel, Switzerland
    • Year and Date
      2013-10-11
  • [Presentation] Functional Equilibrium of Membrane Proteins2013

    • Author(s)
      嶋田一夫
    • Organizer
      International Conference on Structural Genomics 2013
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2013-07-24
  • [Presentation] Functional Equilibrium of Membrane Proteins2013

    • Author(s)
      嶋田一夫
    • Organizer
      54th Experimental Nuclear Magnetic Resonance Conference
    • Place of Presentation
      Asilomar, California, USA
    • Year and Date
      2013-04-15
  • [Presentation] NMRによる膜タンパク質の機能解明2013

    • Author(s)
      嶋田一夫
    • Organizer
      よこはまNMR構造生物学研究会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2013-03-22
  • [Presentation] Functional Equilibrium of Membrane Proteins2013

    • Author(s)
      嶋田一夫
    • Organizer
      Frontiers of NMR in Biology, Keystone Symposia
    • Place of Presentation
      Snowbird, Utah, USA
    • Year and Date
      2013-01-17
  • [Presentation] Functional Dynamics of Membrane Proteins by NMR2012

    • Author(s)
      嶋田一夫
    • Organizer
      第85回生化学会年会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2012-12-11
  • [Presentation] NMRによる膜タンパク質の機能解明2012

    • Author(s)
      嶋田一夫
    • Organizer
      第34回生体膜と薬物の相互作用シンポジウム
    • Place of Presentation
      京都大学薬学部京都市
    • Year and Date
      2012-11-15
  • [Presentation] Functional Equilibrium of Membrane Proteins2012

    • Author(s)
      嶋田一夫
    • Organizer
      The 3rd International Symposium on Drug Discovery and Design by NMR
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2012-10-11
  • [Presentation] Functional Dynamics of Membrane Proteins2012

    • Author(s)
      嶋田一夫
    • Organizer
      ICMRBS
    • Place of Presentation
      Lyon, France
    • Year and Date
      2012-08-21
  • [Presentation] NMRを用いた膜タンパク質の機能解明2012

    • Author(s)
      嶋田一夫
    • Organizer
      第11回日本蛋白質科学会
    • Place of Presentation
      愛知県名古屋市
    • Year and Date
      2012-06-22
  • [Presentation] Dynamical aspects of membrane proteins2012

    • Author(s)
      嶋田一夫
    • Organizer
      INPEC2012
    • Place of Presentation
      台北、台湾
    • Year and Date
      2012-04-06
  • [Remarks] 過渡的複合体 HP

    • URL

      http://ishimada.f.u-tokyo.ac.jp/public_html/tmc/

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Published: 2015-06-25  

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