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1990 Fiscal Year Final Research Report Summary

Stereoselective Synthesis and Chemical Investigation of Modified DNA Oligomer

Research Project

Project/Area Number 01571150
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field Chemical pharmacy
Research InstitutionKyoto University

Principal Investigator

TANAKA Kiyoshi  Institute for Chemical Research, Kyoto University Associate Professor, 化学研究所, 助教授 (50093266)

Co-Investigator(Kenkyū-buntansha) KIMACHI Tetsutaro  Faculty of Pharmaceutical Sciences, Kyoto University Assistant Professor, 薬学部, 助手 (60204963)
YONEDA Fumio  Faculty of Pharmaceutical Sciences, Kyoto University Professor, 薬学部, 教授 (80040327)
Project Period (FY) 1989 – 1990
KeywordsModified Nucleic Acid / DNA Oligomer / Sulfur Modified Thymidine / Functional Antisence Molecule / Stereoselectivity / Heterocyclic Compound / Reductive Repair
Research Abstract

Chemical investigation on stereoselective synthesis and properties of modified DNA oligomers has been done in order to obtain the information about the elucidation of DNA function systems and development of new type of medicines. During this study, the apparatus such as spinning concentrator, and electrophoretic equipments were efficiently employed for isolation and characterization of the modified DNA molecules. The results of our investigation are summaried as follows :
1. Hybridization of functional heterocyclic compounds, flavin, 5-deazaflavin, viologen, with DNA oligomer was effectively achieved in covalent phosphoramidate, using alkylamine as a linker. On the basis of this approach, several modified DNA oligomers have been synthesized, in which the functional hoterocyclic compounds were introduced at the desired site of the sequence.
2. After characterization, the stability of the duplex with their comlementary strands was examined. Subsequently, function and capabilities (intercal … More ator, fluorescence-marker, redox and local cleavage reactor) were investigated by means of UV, fluorescence, ESR spectra and HPLC analyses.
3. The resistant reactivity of the above strand toward the conventional nuclease was observed at the modified site of the sequence.
4. Some kinds of sulfur modified thymidine nucleotides were synthesized, which were incorporated into the desired site of the DNA sequence. The stability of the duplex was investigated by UV and CD spectra, and it turned out that both position of the sulfur and number of the modified base significantly influencedupon the stability and conformation of the duplex.
5. Several attempts were made to achieve stereoselective internucleotide bond formation based on phosphoramidite approach under the controlled condition and with chiral auxiliaries. In spite of the effort, no satisfactory results were obtained and this subject remained as a future problem.
6. The reductive repair of oxidatively damaged nucleosides was investigated and a proposal that glutathione and reduced coenzyme models might play an important role in the living systems, was made. Less

  • Research Products

    (14 results)

All Other

All Publications (14 results)

  • [Publications] Kiyoshi Tanaka: "A Novel Oneーelectron Reduction System Consisting of 1,5ーDihydroー5ーdeazaflavin and Flavinium.Application to the Reductive Repair of 1,3ーDimethylthymineーBromohydrin as a Model of a Damaged Nucleic Acid" J.Chem.Soc.,Chem.Commun.910-911 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Tanaka: "The Reductive Repair of 1,3ーDimethylthymine Bromohydrin into 1,3ーDimethyltymine by 1,5ーDihydroー5ーdeazaflavin or 1,4ーDihydroーquinoline" J.Heterocyclic Chem.26. 877-878 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Tanaka: "The Reductive Repair of Adenineー1ーoxide Derivatives by бーGlutamylcysteinylgycine(Glutahione)" Chem.Pharm.Bull.38. 2893-2895 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Tanaka: "Synthesis and Properties of Oligodeoxyribonucleotides Covelently Linked to a Redox Coenzyme Model,Flavin and 5ーDeazaflavin Derivatives" Chem.Pharm.Bull.39. (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Tanaka: "The Synthesis of Thiothymidine Nucleosides and Their Incorporation into Oligodeoxyribonucleotides at Targeted Site of Sequence" Bioorg.& Med.Chem.Lett.1. (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Tanaka: "The Synthesis and Properties of ViologenーOligonucleotide Conjugate Molecules" Bioorg.& Med.Chem.Lett.1. (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 田中 圭(杉浦 幸雄 編): "生物薬科学実験講座 核酸の合成" (株) 広川書店, (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Tanaka et al.: "A Novel One-electron Reduction System Consisting of 1, 5-Dihydro-5-deazaflavin and flavinium. Application to the Reductive Repair of 1, 3-Dimethylthmine- Bromohydrin as a Model of a Damaged Nucleic Acid" J. Chem. Soc., Chem. Commun. 910-911 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Tanaka et al.: "The Reductive Repair of 1, 3-Dimethylthymine Bromohydrin into 1, 3-Dimethylymine by 1, 5-Dihydro-5-deazaflavin or 1, 4-Dihydroquinoline" J. Heterocyclic Chem.26. 877-878 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Tanaka et al.: "The Reductive Repair of Adenine-1-oxide Derivatives by gamma-Glutamylcysteinylglycine (Glutathione)" Chem. Pharm. Bull.38. 2893-2895 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Tanaka et al.: "Synthesis and Properties of Oligodeoxyribonucleotides Covalently Linked to a Redox Coenzyme Model, Flavin 5-Deazaflavin and Derivatives" Chem. Pham. Bull.39. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Tanaka et al.: "The Synthesis of Thiothmidine Nucleosides and Their Incorporation into Oligodeoxyribonucleotides at Targeted Site of Sequence" Bioorg. & Med. Chem. Left.1. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Tanaka et al.: "The Synthesis and Properties of Viologen-Oligonucleotide Conjugate Molecule" Bioorg. & Med. Chem. Lett.1. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Tanaka (Yukio Sugiura Ed.): "Synthesis of Nucleosides and Nucleotides in 'Seibutsuyakkagakujikkenkouza'" Hirokawa shoten. (1991)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1993-08-12  

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