• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

1990 Fiscal Year Final Research Report Summary

"Development of Methods for High-speed Determination of Nucleotide Sequences Using a DNA Sequencer"

Research Project

Project/Area Number 01880029
Research Category

Grant-in-Aid for Developmental Scientific Research (B).

Allocation TypeSingle-year Grants
Research Field 分子遺伝学・分子生理学
Research InstitutionKobe University

Principal Investigator

ISONO Katsumi  Kobe Univ., Faculty of Science Professor, 理学部, 教授 (70011640)

Co-Investigator(Kenkyū-buntansha) URANO Gen  Aloka Co. Ltd. Researcher, 研究所, 研究員
OHARA Meguru  Kobe Univ., Laboratory of Molecular Biology Assistant, 遺伝子実験施設, 助手 (00204272)
TACHIBANA Hideki  Kobe Univ., Faculty of Science Assoc. Prof., 理学部, 助教授 (70126118)
Project Period (FY) 1989 – 1990
KeywordsOrdered clones / Nucleotide sequencing / Mini-transposon / PCR-amplification / DNA-sequencer
Research Abstract

To make the "genome analysis" of organisms such as Escherichia coli and Saccharomyces cerevisiae possible, it is necessary to develope methods for more rapid and efficient determination of nucleotide sequences. Since the most labor-and time-consuming step in nucleotide sequencing is the subcloning of truncated fragments, an alternative method of sequencing without subcloning was sought. An "ordered clone bank" was established in E. coli by Kohara et al. (1987) and partly in S. cerevisiae by Yoshikawa and Isono (1990 ; 1991). Therefore, if there is a method of amplifying and sequencing a desired region of a clone in the bank, then a rapid and more efficient genome sequencing will be achieved. For this purpose, the "mini-transposon" constructed by Phadnis et al. (1990) appeared to be ideal when used in conjunction with a dnaB (amber) mutant strain termed DK-21 for selection. Mini-transposons were accordingly introduced into individual E. coli and S. cerevisiae ordered clones and the resultant derivatives were analyzed with respect to their positions of transposon insertion. The region flanked by a mini-transposon inserted into the chromosomal segment in a clone and either the right or left arm of the phage vector was then amplified by PCR and the amplified fragment was subjected to sequencing using a DNA sequencer. Thus, it has become possible to obtain nucleotide sequence data without performing subclonings. Furthermore, to facilitate faster and more accurate assembly of the nucleotide sequence data thus obtained, a method was developed in which a control sample of already known sequence such as M13 phage DNA was run in parallel and was used to position each nucleotide in the sequence data correctly.

  • Research Products

    (36 results)

All Other

All Publications (36 results)

  • [Publications] Kang,W.K.: "Characterization of the gene rimK responsible for the addition of glutamic acid residues to the Cーterminus of ribosomal protein S6 in Escherichia coli K12." Mol.Gen.Genet.217. 281-288 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,S.: "Cloning and molecular characterization of the gene rimL which encodes an ezyme acetylating ribosomal protein L12 of Escherichia coli." Mol.Gen.Genet.217. 289-293 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Grohmann,L.: "Molecular cloning of the nuclear gene for mitochondrial ribosomal protein YmL31 from Sccharomyces cerevisiae." Eur.J.Biochem.183. 155-160 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Matsushita,Y.: "Cloning and analysis of the nuclear genes for two mitochondrial ribosomal proteins in yeast." Mol.Gen.Genet.219. 119-124 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,Y.: "Cloning and analysis of an Escherichia coli operon containing the rpmF gene for ribosomal protein L32 and the gene for a 30 kilodalton protein." J.Bacteriol.171. 5707-5712 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kitakawa,M.: "Cloning and characterization of nuclear genes for two mitochondrial ribosomal proteins in Saccharomyces cerevisiae." Nucl.Acids.Res.18. 1521-1529 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshikawa,A.: "Chromosome III of Saccharomyces cerevisiae:An ordered clone bank,a detailed restriction map and analysis of transcripts suggests the presence of 160 genes." Yeast. 6. 383-401 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tachibana,H.: "An‘initiatorーterminator vector'suitable for direct expression of genic segments in Escherichia coli." Protein Eng.3. 371 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Oh,B.‐K.: "The location of a gene for a small stable (10Sa)RNA in the Escherichia coli chromosome." J.Bacteriol.172. 4708-4709 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato,K.: "A synthetic peptide corresponding to residues 137 to 157 of P60^<vーsrc> inhibtits tyrosineーspecific protein kinase." Biochem.Biophys.Res.Commun.171. 1152-1159 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kang,W.‐K.: "Cloning and analysis of YMR26,the nuclear gene for a mitochondrial ribosomal protein in Saccharomyces cerevisiae." Mol.Gen.Genet.(1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Uemura,Y.: "Cloning,characterization and physical location of the rplY gene which encodes ribosomal protein L25 in Escherichia coli Kー12." Mol.Gen.Genet.(1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kitakawa,M.: "The mitochondrial ribosome." Biochimie. (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Graack,H.‐L.: "The nuclear coded mitoribosomal proteins YmL27 are YmL31 and both essential for mitochondrial function in yeast." Biochimie. (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kang,W.‐K.: "Cloning and anaysis of the nuclear gene for YmL33,a protein of the large subunit of the mitochondrial ribosome in Saccharomyces cerevisiae." J.Bacteriol.(1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshikawa,A.: "Construction of an ordered clone bank and systematic analysis of the whole transcripts of chromosome VI of Saccharomyces cerevisiae." Nucl.Acids Res.(1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Isono,K.: "The Escherichia coli database and its retrieval system:Quick access to genetic and physical map,ordered clones,nucleotide sequences and related literature." (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Jeong,Z.: "Nucleotide sequence and analysis of an Escherichia coli chromosomal region containing the genes for ribosomal proteins L21 and L27." (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kang, W. -K. , Icho, T. , Isono, S. , Kitakawa, M. , Isono, K.: "Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12" Mol. Gen. Genet. 217. 281-288 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, S. , Matsushita, Y. , Yoshikawa, A. , Isono, K.: "Cloning and molecular characterization of the gene rimL which encodes an enzyme acetylating ribosomal protein L12 of Escherichia coli." Mol. Gen. Genet. 217. 289-293 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Grohmann, L. , Graack, H. -R. , Kitakawa, M.: "Molecular cloning of the nuclear gene for mitochondrial ribosomal protein YmL31 from Sccharomyces cerevisiae." Eur. J. Biochem. 183. 155-160 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Matsushita, Y. , Kitakawa, M. , Isono, K.: "Cloning and analysis of the nuclear genes for two mitochondrial ribosomal proteins in yeast." Mol. Gen. Genet. 219. 119-124 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, Y. , Tsujimura, A. , Fujita, N. , Isono, S, Isono, K.: "Cloning and analysis of an Escherichia coli operon containing the rpmF gene for ribosomal protein L32 and the gene for a 30 kilodalton protein" J. Bacteriol. 171. 5707-5712 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kitakawa, M., Isono, K. , Grohmann, L. , Graack, H. -R.: "Cloning and characterization of nuclear genes for two mitochondrial ribosomal proteins in Saccharomyces cerevisiae." Nucl. Acids Res. 18. 1521-1529 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshikawa, A., Isono, K.: "Chromosome III of Saccharomyces cerevisiae : An ordered clone bank, a detailed restriction map and analysis of transcripts suggests the presence of 160 genes" Yeast. 6. 383-401 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tachibana, H. , Sasaki, Y. , Sawano, H., Kitakawa, M.: "An 'initiatro-terminator vector' suitable for direct expression of genic segments in Escherichia coli." Protein Eng. 3. 371 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Oh, B. -K. , Isono, K. , Apirion, D.: "The location of a gene for a small stable (10Sa) RNA in the Escherichia coli chromosome." J. Bacteriol. 172. 4708-4709 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato, K., Miki, S. , Tachibana, H. , Hayashi, F. , Akiyama, T. , Fukami, Y.: "A synthetic peptide corresponding to residues 137 to 157 of p60^<v-src> inhibits tyrosine-specific protein kinase." Biochem. Biophys. Res. Commun. 171. 1152-1159 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kang, W. -K. , Matsushita, Y. , Isono, K.: "Clining and analysis of YMR26, the nuclear gene for a mitochodrial ribosomal protein in Saccharomyces cerevisiae." Mol. Gen. Genet. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Uemura, Y. , Isono, S. , Isono, K.: "Cloning, characterization and physical location of the rpIY gene which encodes ribosomal protein L25 in Escherichia coli K-12" Mol. Gen. Genet. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kitakawa, M. , Isono, K.: "The mitochondrial ribosome." Biochimie. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Graack, H. -L. , Grohmann, L. , Kitakawa, M.: "The nuclear coded mitoribosomal proteins YmL27 and YmL31 are both essential for mitochondrial function in yeast." Biochimie. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kang, W. -K. , Matsushita, Y. , Grohmann, L. , Graack, H. -R. , Kitakawa, M. , Isono, K.: "Cloning and analysis of the nuclear gene for YmL33, a protein of the large subunit of the mitochondrial ribosome in Saccharomyces cerevisiae." J. Bacterial. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshikawa, A. , Isono, K.: "Construction of an ordered clone bank and systematic analysis of the whole transcripts of chromosome VI of Saccharomyces cerevisiae." Nucl. Acids Res. (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Isono, K. , Kohara, Y. , Miyazawa, S.: "The Escherichia coli database and its retrieval system : Quick access to genetic and physical map, ordered clones, nucleotide sequences and related literature" (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Jeong, Z. , Kitakawa, M. , Isono, S. , Isono, K.: "Nucleotide sequence and analysis of an Escherichia coli chromosomal region containing the genes for ribosomal proteins L21 and L27." (1991)

    • Description
      「研究成果報告書概要(欧文)」より

URL: 

Published: 1993-08-12  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi