• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

1992 Fiscal Year Final Research Report Summary

Structure and Function of Aspartate Aminotransferase

Research Project

Project/Area Number 02044117
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionKUMAMOTO UNIVERSITY

Principal Investigator

MORINO Yoshimasa  KUMAMOTO UNIVERSITY, PRESIDENT, 学長 (30028352)

Co-Investigator(Kenkyū-buntansha) KIRSCH J.F.  UNIVERSITY OF CALIFORNIA, PROFESSOR, 生化学, 教授
ARNONE A.  THE UNIVERSITY OF IOWA, PROFESSOR, 生化学, 教授
METZLER D.E.  IOWA STATE UNIVERSITY, PROFESSOR, 生化学, 教授
HIROTSU Ken  OSAKA CITY UNIVERSITY, FACULTY OF SCIENCE, PROFESSOR, 理学部, 教授 (10047269)
YANO Takato  OSAKA MEDICAL COLLEGE, RESEARCH ASSISTANT, 助手 (40239827)
HAYASHI Hideyuki  OSAKA MEDICAL COLLEGE, LECTURER, 講師 (00183913)
KURAMITSU Seiki  OSAKA UNIVERSITY, FACULTY OF SCIENCE, PROFESSOR, 理学部, 教授 (60153368)
TANASE Sumio  KUMAMOTO UNIV., SCHOOL OF MEDICINE, ASSISTANT PROFESSOR, 医学部, 助教授 (20112401)
KAGAMIYAMA Hiroyuki  OSAKA MEDICAL COLLEGE, PROFESSOR, 教授 (80028555)
Project Period (FY) 1990 – 1992
KeywordsAminotransferse / Pyridoxal / Genetic engineering / Amino acid substitution / Catalytic activity / Substrate specificity / Structure and function relationship / X-ray crystallography
Research Abstract

Aspartate aminotransferase (AspAT) is one of the most typical pyridoxal phosphate-dependent enzymes. The aim of the present project is to elucidate the structure-function relationships of pig cytosolic Escherichia coli AspATs. The joint research was performed by three research groups in Japan ant three groups in the United States. They include investigators with expertise in x-ray cystallography, site-directed mutagensis, NMR and other spectroscopic techniques. Both enzymes from different sources are very similar in the three dimensional structure ; ie., each subunit of these dimeric proteins consists of a small domain (residues 12-49 and 326-412), and a large domain (residues 50-325) that provides the binding site for the coenzyme. A comparison of the x-ray structure between the free enzyme and the complex with 2-methylaspartate suggested that substrate induces a movement of the small domain toward the bound coenzyme to close the entrance to the active site cleft. Among small domain residues, mutation at Gly38 caused a striking decrease in catalytic activity. X-ray and solution studies showed that Gly38 mutant enzymes bind 2-methylaspartate at active site, but the binding does not induce the closure of the small domain. Gly38 is probably required for proper function of the enzyme because it permits a high level of flexibility for the 36-39 peptide, which in turn allows the essential domain closure. Further x-ray studies have led to a new finding that the peptide stretch from residues 225 to 229 changes its positions upon binding 2-methylaspartate. Another promising issue is inquiry into the catalytic significance of the histidine cluster (His 143, and 189) at the bottom of the coenzyme. Single, double and triple mutations at these positions are currently being prepared. Thus the current results will open a new prospect in pursuing the significance of substrate-induced conformational change, one most intriguing issue in enzymology.

  • Research Products

    (66 results)

All Other

All Publications (66 results)

  • [Publications] YANO,T.: "Role of Asp222in the catalytic mechanism of Escherichia coli aspartate aminotransferase:the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5′-phosphate." Biochemistry. 31. 5878-5887 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] TANASE,S.: "Molecular biological aspects of amino acid metabolizing enzymes." 日本臨床. 50. 1488-1496 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] OKAMOTO,A.: "Protein engineering.I:X-ray crystallographic study of aspartate aminotransferase and its mutant enzymes." 蛋白質核酸酵素. 37. 2231-2242 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] KURAMITSU,S.: "Protein enginnering.II:Catalytic mechanisn of aminotransterase." 蛋白質核酸酵素. 37. 2243-2256 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Gloss,L.M.: "Contribution to catalysis and stability of the five cysteines in Escherichia coli sapartate aminotransferase.Preparation and properties of a cysteine-free enzyme." Biochemistry. 31. 32-39 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] YANO,T.: "The role of His143 in the catalytic mechanism of Escherichia coli aspartate aminotransferase." J.Biol.Chem.266. 6079-6085 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Toney,M.D.: "The K258R mutant of sapartate aminotransferase stabilizes the quinonoid intermediate." J.Biol.Chem.266. 23900-23903 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Toney,M.D.: "Tyrosine 70 fine-tunes the catalytic efficiency of aspartate aminotransterase." Biochemistry. 30. 7456-7461 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sung,M.H.: "Thermostable aspartate aminotransferase from a thermophilic Bacillus species.Gene cloning,sequence determination,and preliminary x-ray characterization." J.Biol.Chem.266. 2567-2572 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Planas,A.: "Reengineering the catalytic lysine of aspartate aminotransferase by chemical elaboration of a genetically introduced cysteine." Biochemistry. 30. 8268-8276 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Metzler,D.E.: "NMR spectra of exchangeable protons of pyridoxal phosphate-dependent enzymes." Biochem.Biophys.Res.Commun.178. 385-392 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kintanar,A.: "NMR observation of exchangeable protons of pyridoxal phosphate and histidine residues in cytosolic aspartate aminotransferase." J.Biol.Chem.266. 17222-17229 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] INOUE,K.: "Tyr225 in aspartate aminotransferase:contribution of the hydrogen bond between Tyr225 and coenzyme to the catalytic reaction." J.Biochem.(Tokyo). 109. 570-576 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] INOUE,K.: "Site-directed mutagenesis of Escherichia coli aspartate aminotransferase:role of Tyr70 in the catalytic processes." Biochemistry. 30. 7796-7801 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] HIGAKI,T.: "Porcine cytosolic aspartate aminotransferase reconstituted with [4′-13C]pyridoxal phosphate.pH-and ligand-induced changes of the coenzyme observed by 13C NMR spectroscopy." Biochemistry. 30. 2519-2526 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] HAYASHI,H.: "Replacement of an interdomain residue Va139 of Escherichia coli aspartate aminotransferase affects the catalytic competence without altering the substrate specificity of the enzyme." J.Biochem.(Tokyo). 109. 699-704 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Goldberg,J.M.: "The tyrosine-225 to phenylalanine mutation of Escherichia coli aspartate aminotransferase results in an alkaline transition in the spectrophoto-metric and kinetic pKa values and reduced values of both kcat and Km." Biochemistry. 30. 305-312 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] FUKUMOTO,Y.: "Structural and functional role of the amino-terminal region of porcine cytosolic aspartate aminotransferase.Catalytic and structural properties of enzyme derivatives truncated on the amino-terminal side." J.Biol.Chem.266. 4187-4193 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] MORINO,Y.: "Mammalian aspartate aminotransferase isozymes.From DNA to protein." Ann.N.Y.Acad.Sci.585. 32-47 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kirsch,J.F.: "Bronsted analysis of enzymatic proton transter reactions through site-directed mutagenesis." Ann.N.Y.Acad.Sci.585. 48-57 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Taylor,J.E.: "Modeling inhibitors in the active site of aspartate aminotransferase." Ann.N.Y.Acad.Sci.585. 58-67 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sung,M.H.: "Purification and characterization of thermostable aspartate aminotransferase from a thermophilic Bacillus species." J.Bacteriol.172. 1345-1351 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Planas,A.: "Sequential protection-modification method for selective sulfhydryl group derivatization in proteins having more than one cysteine." Protein Eng.3. 625-628 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] KURAMITSU,S.: "Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity." Biochemistry. 29. 5469-5476 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] KAMITORI,S.: "Three-dimensional structures of aspartate aminotransferase from Escherichia coli and its mutant enzyme at 2.5 A resolution." J.Biochem.(Tokyo). 108. 175-184 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] HAYASHI,H.: "Effects of replacement of tryptophan-140 by phenylalanine or glycine on the function of Escherichia coli aspartate aminotransferase." Biochem.Biophys.Res.Commun.167. 407-412 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Toney,M.D.: "Kinetics and equilibria for the reactions of coenzymes with wild type and the Y70F mutant of Escherichia coli aspartate aminotransferase." Biochemistry. 30. 7461-7466 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Morino,Y.: "Molecular biology of aspartate aminotransferase isozymes:Structural comparison of isozymic genes and molecular basis of catalysis.in″Progress in Clinical Biochemistry″" Elsevier Science Publishers,B.V, 7 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suginohara,K.: "Probing a functional role of Glu141 in porcine cytosolic aspartate aminotransferase.in″Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors″" Pergamon Press,Oxford, 3 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nishimura,K.: "Insight into ″induced fit″ mechanism of porcine cAspAT through the behavior of the residue at position 18.in″Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors″" Pergamon Press,Oxford, 3 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanase,S.: "Functional role of the mobile aminoterminal segment of porcine cytosolic aspartate aminotransterase.in ″Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors″" Pergamon Press,Oxford, 3 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kuramitsu,S.: "Asp222,His143,and Tyr70 in E.coli aspartate aminotransferase.in ″Enzymes Dependent on Pyridoxal and Othe Carbonyl Compounds as Cofactors″" Pergamon Press,Oxford, 3 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kondo,H.: "15N NMR study on aspartate aminotransferase reconstituted with [15N]PLP.in″Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors″" Pergamon Press,Oxford, 3 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Metzler,D.E.: "Observing protons in the active sites of enzymes by NMR spectroscopy in″Modern Enzymology:Problem and Trends″" Nova Science Publishers,Moscow, (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yano, T.: "Role of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase : the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5^1-phosphate." Biochemistry. 31. 5878-5887 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanase, S.: "Molecular biological aspects of amino acid metabolizing enzymes." Nihon Rinshou. 50. 1488-1496 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Okamoto, A.: "Protein engineering. I : X-ray crystallographic study of aspartate aminotransferase and its mutant eyzymes." Protein, Nucleic acid, Enzyme. 37. 2231-2242 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kuramitsu, S: "Protein engineering. II : Catalytic mechanism of aminotransferse." Protein, Nucleic acid, Enzyme. 37. 2243-2256 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Gloss, L.M.: "Contribution to catalysis and stability of the five cysteines in Escherichia coli aspartate aminotransferse. Preparation properties of a cysteine-free enzyme." Biochemistry. 31. 32-39 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yano, T.: "the role of His 143 in the catalytic mechanism of Escherichia coli aspartate aminotransferase." J. Biol. Chem.266. 6079-6085 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Toney, M.D.: "The K258R mutant of aspartate aminotransferase stabilizes the quinonoid intermediate." J. Biol. Chem.266. 23900-23903 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Toney, M.D.: "Kinetics and equilibria for the reactions of coenzymes with wild type and the Y70F mutant of Escherichia coli aspartate aminotransferase." Biochemistry. 30. 7461-7466 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Toney, M.D.: "Tyrosine 70 fine-tunes the catalytic efficiency of aspartate aminotransferase." Biochemistry. 30. 7456-7461 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sung, M. H.: "Thermostable aspartate aminotransferase from a thermophilic Bacillus species. Gene cloning, sequence determination, and preliminary x-ray characterization." J. Biol. Chem.266. 2567-2572 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Planas, A.: "Reengineering the catalytic lysine of aspartate aminotransferase by chemical elaboration of a genetically introduced cysteine." Biochemistry. 30. 8268-8276 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Metzler, C. M.: "NMR spectra of exchangeable protons of pyridoxal phosphate-dependent enzymes." Biochem. Biophys. Res. Commun.178. 385-392 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kintanar, A.: "NMR observation of exchangeable protons of pyridoxal phosphate and histidine residues in cytosolic aspartate aminotransferase." J. Biol. Chem.266. 17222-17229 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Higaki, T.: "Porcine cytosolic aspartate aminotranserase reconstituted with [4^1-^<13>C] pyridoxal phosphate. pH-and ligand-induced changes of the coenzyme observed by ^<13>C NMR spectroscopy." Biochemistry. 30. 2519-2526 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inore, K.: "Site-directed mutagensis of Escherichia coli aspartate aminotransferase : role of Try70 in the catalytic processes." Biochemistry. 30. 7796-7801 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inore, K.: "Tyr225 in aspartate aminotransferase : contribution of the hydrogen bound between Tyr225 and coenzyme to the catalytic reaction." J. Biochem. (Tokyo). 109. 570-576 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hayashi, H.: "Replacement of an interdomain residue Val39 of Eschrichia coli aspartate aminotransferase affects the catalytic competence without altering the substrate specificity of the enzyme." J. Biochem. (Tokyo). 109. 699-704 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Goldberg, J. M.: "The tyrosine-225 to phenylalanine mutation of Escherichia coli aspartate aminotransferase results in an alkaline transition in the spectrophotometric and kinetic pKa values and reduced values of both kcat an Km." Biochemistry. 30. 305-312 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Fukumoto, Y.: "Structural and functional role of the amino-terminal region of porcine cytosolic aspartate aminotransferase. Catalytic and structural properties of enzyme derivatives truncated on the amino-terminal side." J. Biol. Chem.266. 4187-4193 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sung, M. H.: "Purification and characterization of thermostable aspartate aminotransferase from thermophilic Bacillus species." J. Bacteriol.172. 1345-1351 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Planas, A.: "Sequential protection-modification method for selective sulfhydryl derivatization in proteins having more than one cysteine." Protein Eng.3. 625-628 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Mirino, Y.: "Mammalian aspartate aminotransferase isozymes. From DAN to protein." Ann. N. Y. Acad. Sci.585. 32-47 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kirsch, J. F.: "Bronsted analysis of enzymatic prtoton reactions through site-directed mutagenesis." Ann. N. Y. Acad. Sci.585. 48-57 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Taylor, J. E.: "Modeling inhibitors in the active site of aspartate aminotransferase." Ann. N. Y. Acad. Sci.585. 58-67 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kuramitsu, S.: "Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity." Biochemistry. 29. 5469-5479 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kamitori, S.: "Three-dimensional structures of aspartate aminotransferase from Escherichia coli and its mutant enzyme at 2.5 A resolution." J. Biochem (Tokyo). 108. 175-184 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kayashi, H.: "Effects of replacement of tryoptophan-140 by phenylalanine or glycine on the function of Escherichia coli aspartate aminotransferase." Biochem. Biophys. Res. Commun.167. 407-412 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kondo, H.: Pergamon Press, Oxford. Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors, 145-147 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kuramitsu, S.: Pergamon Press, Oxford. Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors, 179-181 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanase, S.: Pergamon Press, Oxford. Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors, 187-189 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nishimura, K.: Pergamon Press, Oxford. Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors, 191-193 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Suginohara, K.: Pergamon Press, Oxford. Enzymes Dependent on Pyridoxal and Other Carbonyl Compounds as Cofactors, 195-197 (1991)

    • Description
      「研究成果報告書概要(欧文)」より

URL: 

Published: 1994-03-24  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi