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1991 Fiscal Year Final Research Report Summary

Analyses of Dynamic Structures of Intracellular Systems by Synchrotron Radiation

Research Project

Project/Area Number 02302092
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field 生物物性学
Research InstitutionOsaka University

Principal Investigator

TOKUNAGA Fumio  Osaka University, Faculty of Science, Department of Biology Professor, 理学部, 教授 (80025452)

Co-Investigator(Kenkyū-buntansha) MITSUI Toshio  Meiji University, Faculty of Science and Engineering, Department of Physics, Pro, 理工学部, 教授 (70000726)
EBASHI Setsuro  Okazaki Ational Institutes President, 機構長 (10009863)
IKEGAMI Akira  Keio University School of Medicine Professor, 医学部, 教授 (60011483)
IIZUKA Tetsutaro  The Institute of Physical and Chemical Research Chief Researcher, 主任研究員 (30029475)
ANDO Masami  National Institute of High Physics Photon Factory Professor, 放射光実験施設, 教授 (30013501)
Project Period (FY) 1990 – 1991
KeywordsSynchrotron Radiation / Intracellular Systems / Dynamic Structures / Proteins / Crystal Analyses / Muscles / Visual Pigments / Biomembranes
Research Abstract

Recently diffraction and scattering experiments with use of strong X-ray in synchrotron radiation have rapidly developed. The experiments to analyze enzymatic reactions in crystals with high time resolutions have started and dynamic structural analyses on muscle contraction and functions of membrane proteins have become able to analyze. The aims of this research are to combine researchers who are using and interested in synchrotron radiation, to make the present questions on various proteins and dynamic supramolecular structures in biological systems clear and to progress this field. The following topics were reported in this year : The crystal structure analysis sytem for big molecules with Weissenberg camera and an imaging plate was developed and the performance was confirmed to be more efficient than any other equipments in the world by the analysis of the crystal of reverse transcriptase which acts when AIDS virus multiplies. A full automated rapid x-ray diffractometor was develope … More d and the performance was evaluated with use of tetrazolylmyoglobin and mashroom lectin. A focusing type soft x-ray microscope with zoneplates was developed and the availability to biological materials was confirmed by the observation of red blood cells and so on. In the field of crystal strucutres of proteins, the following protein structures were analyzed ; immunogloblin Fv fragments, archaebacterium ferredoxin, cytochrome C3 and c553 of sulfate-reducing bacteria, hydrogenase, high molecular weight cytochrome and so on. The differences in binding charactors between iron and ligand moleculaes were found by analyses on x-ray absorption spectra among oxidized cytochrome P450, peroxidase and myoglobin. The reaction scheme of dissociation of ATP synthetase alpha_3beta_3 into alphabeta was analyzed by measurements of time-dependent small angle x-ray scattering. It was reported that disorder was induced in purple membrane during photocyle, but the time-dependent diffraction change showed no disorder during photocycle. The function mechanism of oncogene prodeuct rasp21 was analyzed with structural change depending on GTP・GDP exchange reaction. In the field of muscle research, the following phenomena were analyzed ; structural changes of thin filaments during contraction, fine structural changes of actin-myosin systems, and effects of chemical modification of myosin head on the functions. The more precise model of structual change in microvilli of squid visual cells was constructed. Less

  • Research Products

    (71 results)

All Other

All Publications (71 results)

  • [Publications] Ebashi,S.: "Studies on Ca^<2+> regulation of muscle contraction:Past and Present New Trends in biological chemistry" Japan Sci.Press,Tokyo/Springer-Verlag,Berlin, 9 (1991)

    • Description
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  • [Publications] Ebashi,S.: "Tropomyosin as the spearhead of regulatory proteins,World Scientific" Retrospect and prospect of Protein research, 6 (1991)

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  • [Publications] Akiba, T., Yoshimura, H. and Namba, K.: "Monolayer Crystallization of Flagellar L-P Rings by Sequential Addition and Depletion of Lipid" Science. 252. 1544-1546 (1991)

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  • [Publications] Amemiya, Y., and Wakabayashi, K.: "Imaging plate and its application to X-ray diffraction of muscle" Adv. Biophys.27. 115-127 (1991)

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  • [Publications] Caspar, D. L. D and Namba, K.: "Switching in the Self-Assembly of Tobacco Mosaic Virus" Adv. Biophys.26. 157-185 (1990)

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  • [Publications] Ebashi, S.: "Excitation-contraction coupling and the mechanism of muscle contraction" Annu. Rev. Physiol.53. 1-16 (1991)

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  • [Publications] Ebashi, S.: "Muscle research : A cornerstone of life science" Med. Sport Sci.37. 1-6 (1992)

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  • [Publications] Flanagan, J. M., Kataoka, M., Shortle, D., and Engelman, D. M.: "Truncated Staphylococcal Nuclease is Compact but Disordered" Proc. Natl. Acad. Sci. U. S. A.89. 748-752 (1992)

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  • [Publications] Fujii, I., Morimot, Y., Higuchi, Y., Yasuoka, N., Katayama, C., and Miki, K.: "Evaluation of X-ray Diffraction Data from Protein Crystals by Use of an Imaging Plate" Acta. Cryst.B47. 137-144 (1991)

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  • [Publications] Fujii, T., Moriyama, H., Takenaka, A., Tanaka, N., Wakagi, T., and Oshima, T.: "Crystallization and preliminary X-ray studies on Sulfolobus acidocaldarius Ferredoxin" J. Biochem.110. 472-473 (1991)

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  • [Publications] Fujisawa, T., Ueki, T., and Iida, S.: "Structural Change of Troponin C Molecule and its domains upon Ca Binding in the Presence of Mg Ions Measured by a Solution X-ray Scattering Technique" J. Biochem.107. 343-451 (1990)

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  • [Publications] Graves, B. J., Hatada, M. H., Hendrickson, W. A., Miller, J. K., Madison, V. S., and Satow, Y.: "Structure of Interleukin 1alpha at 2.7-A Resolution" Biochemistry. 29. 2679-2684 (1990)

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  • [Publications] Hara, M., Namba, K., Hirata, Y., Majima, T., Kawamura, S., Asada, Y. and Miyake, J.: "The Photoreaction Unit in Rhodopseudomonas viridis" Plant Cell Physiol.31. 951-960 (1990)

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  • [Publications] Harada, M., Ito, Y., Sato, M., Aono, O., Ohta, S., and Kagawa, Y.: "Small-Angle X-ray Scattering Studies of Mg-AT(D)P-induced Hexamer Dimer Dissociation in the Reconstituted alpha_3beta_3 Complex of ATP Synthase from Thermophilic Bacterium PS3" J. Biol. Chem.266. 11455-11460 (1991)

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  • [Publications] Hata, T., Hata, Y., Sato, T., Tanaka, N., Neya, S., Funasaki, N., and Katsube, Y.: "The 2.0 A cdrystal structure of cyanide metmyoglobin reconstituted with 5, 10, 15, 20-tetrapropylhemin" Bull. Chem. Soc.64. 821-828 (1991)

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  • [Publications] Hiragi, Y., Inoue, H., Sano, Y., Kajiwara, K., Ueki, T., and Nakatani, H.: "Dynamic Mechanism of the Self-Assembly Process of Tobacco Mosaic Virus Protein Studied by Rapid Temperature-Jump Small-Angle X-ray Scattering Using Synchrotron Radiation" J. Mol. Biol.213. 495-502 (1990)

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  • [Publications] Hiraki, K., Hamanaka, T., Seidou, M., and Kito, Y.: "Conformation Changes of Cuttlefish (Euprymna Morsei) Rhodopsin Following Photoconversion" Biochim. Biophys. Acta. 1077. 355-361 (1991)

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  • [Publications] Hisatomi, O., Iwasa, T., tokunaga, F. and Yasui, A.: "Isolation and Characterization of lamprey rhodopsin cDNA" Biochem, . biophys. Res. Commun.174. 1125-1132 (1991)

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  • [Publications] Igarashi, T., Sato, M., Katsube, Y., Takio, K., Tanaka, T., Nakanishi, M., and Arata, Y.: "Structure of a Mouse Immunoglobulin G That Lacks the Entire C_HU Domain : Protein Sequencing and Small-Angle X-ray Scattering Studies" Biochemistry. 29. 5727-5733 (1990)

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  • [Publications] Imada, K., Sato, M., Tanaka, N., Katsube, Y., Matsuura, Y. and Oshima, T.: "Three-dimensional Structure of a Highly Thermostable Enzyme, 3-Isopropylmalate Dehydrogenase of Thermus thermophilus at 2.2 Resolution" J. Mol. Biol.222. 725-738 (1991)

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  • [Publications] Inoue, H., Hiragi, Y., Sano, Y., Kajiwara, K., Ueki, T., and Nakatani, H.: "Structural Kinetics : Temperature-Jump Synchrotron Small-Angle X-ray Scattering Study of Tobacco Mosaic Virus Protein as an Example" Bull. Inst. Chem. Res., Kyoto Univ.69. 92-100 (1991)

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  • [Publications] Iwasa, T., Nakajima, K., Takao, M. and Tokunaga, F.: "Light-dependent proton movement and photointermediates on bacteriorhopsin photocycle" Sci. Rep. Tohoku Univ.11. 229-237 (1991)

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  • [Publications] Kamiya, N., Shiro, Y., Iwata, T., Iizuka, T., and Iwasaki, H.: "Heme Environmental Structure of a Novel Artificial Myoglobin with Closed Heme Pocket : Site-Specific Chemical Modification Producing Distal N-Tetrazolylhistidine E7 by Cyanogen Bromide and Azide Ion." J. Am. Chem. Soc.113. 1826-1829 (1991)

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  • [Publications] Katagiri, C., Sato, M., Kort, S., and Katsube, Y.: "Structure of Colorado Potato Beetle Lipophorin : Differential Scanning Calolimetric and Small-Angle X-ray Scattering Studies" Biochemistry. 30. 9675-9681 (1991)

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  • [Publications] Kataoka, M., Head, J. F., Persechini, A., Kretsinger, R. H., and Engelman, D. M.: "Small-angle X-ray Scattering Studies of Calmodulin Mutants with Deletions in the Linker Region of the Central Helix Indicate that the Linker Region Retains a Predominantly alpha-Helical Conformation" Biochemistry. 30. 1188-1192 (1991)

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  • [Publications] Kataoka, M., Sato, N., Hamanaka, T., Amemiya, Y., and Tokunaga, F.: "Properties of the Disorder Induced into Purple Membrane Structure by Iodination" Sci. Rep. Tohoku Univ.11. 239-250 (1991)

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  • [Publications] Kataoka, M., Head, J. F., Vorherr, T., Krebs, J., and Carafoli, E.: "Small-angle X-ray Scattering Study of Calmodulin Bound to Two Peptides Corresponding to Parts of the Calmodulin-binding domain of the Plasma Membrane Ca^<2+> Pump" Biochemistry. 30. 6247-6251 (1991)

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  • [Publications] Kawaguchi, T., Hamanaka, T., Kito, Y., and Machida, H.: "Structural Studies of a Homologous Series of Alkyl Sucrose Ester Micelle by X-Ray Scattering" J. Phys. Chem.95. 3837-3846 (1991)

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  • [Publications] Kawata, Y., Tani, S., Sato, M., Katsube, Y. and Tokushige, M.: "Preliminary X-ray Crystallographic Analysis of Tryptophanase from Escherichia coli" FEBS Lett.284. 270-272 (1991)

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  • [Publications] Kitagawa, Y., Tanaka, N., Hata, Y., Kusunoki, M., Lee, G. -P., Katsube, Y., Asada, K., Aibara, S., and Morita, Y.: "Three-dimensional structure of Cu, Zn-superoxide dismutase from Spinach at 2.0 A resolution" J. Biochem.110. 472-473 (1991)

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  • [Publications] Konishi, M., Wakabayashi, K., Kurihara, S., Higuchi, H., Onodera, N., Umazume, Y., Tanaka, H., Hamanaka, T., and Amemiya, Y.: "Time-resolved synchrotron X-ray diffraction studies of a single frog skeletal muscle fiber : Time-courses of intensity changes of the equatorial reflections and intracellular Ca transients" Biophys. Chem.39. 287-297 (1991)

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  • [Publications] Kusunoki, M., Ono, t., Matushita, T., Oyanagi, H., and Inoue, Y.: "Mn K-Edge XANES Spectroscopy of a Photosynthetic O_2-Evolving Complex : High-Quality Pre-Edge Feature and Distinct Fine Structures in the S1- and S2-States" J. Biochem.108. 560-567 (1990)

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  • [Publications] Kuwayama, H., Sugiura, M., Sugita, H., and Ebashi, S.: "Porcine skeletal muscle dystrophin" Proc. Japan Acad.66(B). 145-150 (1990)

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  • [Publications] Matsubara, I., Yagi, N., Saeki, Y., and Kurihara, S.: "Cross-bridge movement in fast and slow skeletal muscles of the chick." J. Physiol.441. 113-120 (1991)

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  • [Publications] Matuoka, S., Kato, S., Akiyama, M., Amemiya, Y., and Hatta, I.: "Temperature dependence of the ripple structure in dimyristoylphosphatidylcholine studies by synchrotron x-ray small-angle diffraction" Biochim. biophys. Acta. 1028. 103-109 (1990)

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  • [Publications] Mikami, T., Tanaka, N., Sato, T., Moriyama, H., Numata, M., Fujiwara, T., Fukumori, Y., Yamanaka, T., Sato, M., Kakiuchi, K., Katsube, Y., and Kishimoto, S.: "Crystallization and preliminary studies of Hydroxylamine oxidoreductase from Nitorosomonas europaea" J. Biochem.110. 681-682 (1991)

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  • [Publications] Morimoto, Y., Tani, T., Okumura, H., Higuchi, Y., and Yasuoka, N.: "Effects of Amino Acid Substitution on Three-Dimensional Structure : An X-ray Analysis of Cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A Resolution" J. Biochem.110. 532-540 (1991)

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  • [Publications] Morimoto, Y., Sato, M., Kato, T., Tanaka, N., Katsube, Y., Tanaka, M. and Ozawa, T.: "Small angle X-ray scattering study of cytochrome oxidase from Beef Heart and its complex with cgtochrome c using contrast variation method" Bull. Chem. Soc.64. 1153-1159 (1991)

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  • [Publications] Nagamune, T., Honda, J., Cho, W. -D., Kamiya, N., Teratani, T., Hirata, A., Sasabe, H., and Endo, I.: "Crystallization of a Photosensitive Nitrile Hydratase from Rhodococcus sp. N-771." J. Mol. Biol.220. 221-222 (1991)

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  • [Publications] Nakagawa, A., Higuchi, Y., Yasuoka, N., Katsube, Y., and Yagi, T.: "S-Class Cytochrome c Have a Variety of Folding Patterns : Structure of Cytochrome c-553 from Desulfovibrio vulgaris Determined by the Multi-wavelength Anomalous Dispesion Method" J. Biochem.108. 701-703 (1990)

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  • [Publications] Nakasako, M., Wada, M., Tokutomi, S., Yamamoto, K. T., Sakai, J., Kataoka, M., Tokunaga, F., and Furuya M.: "Quarternary Structure of Pea Phytochrome I Dimer Studied with Small-Angle X-ray Scattering and Rotary-Shadowing Electron Microscopy" Photochem. Photobiol.52. 3-12 (1990)

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  • [Publications] Nakasako, M., Kataoka, M., Amemiya, Y., and tokunaga, F.: "Crystallographic Characterization of M-intermediate Appearing in the Photocycle or Bacteriorhodopsin with X-ray Diffraction Technique at Room Temperature" FEBS Lett.292. 73-75 (1991)

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  • [Publications] Ohki, K., Tamura, K., and Hatta, I.: "Ethanol induces interdigitated gel phase (Lbeta_I) between lamellar gel phase (Lbeta') and ripple phase (Pbeta') in phosphatidylcholine membranes : a scanning density meter study" biochim. Biophys. Acta. 1028. 215-222 (1991)

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  • [Publications] Ono, T., Kusunoki, M., Matsushita, T., Oyanagi, H., and Inoue, Y.: "Structural and Fucntional Modification of the Manganese Cluster in Ca^<2+>-Depleted S1 and S2 States : Electron Paramagnetic Resonance and X-ray Absorption Spectroscopy Studies" Biochemistry. 30. 6836-6841 (1991)

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  • [Publications] Onodera, K., Moriyama, H., takenaka, A., Tanaka, N., Akutsu, N., Muro, M., Oshima, T., Imada, K., Sato, M., and Katsube, Y.: "Crystallization and preliminary X-ray studies of a Bacillus subtilis and Thermus thermophilus HB8 chimeric 3-isopropylmalate dehydrogenase" J. Biochem.109. 1-2 (1991)

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  • [Publications] Seidou, M., Sugahara, M., Uchiyama, H., Hiraki, K., Hamanaka, T., Michinomae, M., Yoshihara, K., and Kito, Y.: "On the Three Visual Pigments in the Retina of the Firefly Squid, Watasenia Scintillans" J. Comp. Physiol. A. 166. 769-773 (1991)

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  • [Publications] Sekiya, N., Kishigami, A., Naoki, H., Chang, C. -W., Yoshihara, K., Hara, R., Hara, T. and Tokunaga, F.: "Fourier transform infrared spectroscopic study of retinochrome and its primary photoproduct, lumiretinochrome" FEBS lett.280. 107-111 (1991)

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  • [Publications] Shiro, Y., Sato, F., Suzuki, T., Iizuka, T., Matsushita, T., and Oyanagi, H.: "X-Ray Absorption Spectral Study of Ferric High Spin Hemo-Proteins : XANES Evidences for Coordination Structure of the Heme Iron" J. Am. Chem. Soc.112. 2921-2924 (1991)

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  • [Publications] Shiro, Y., Makino, R., Sato, H., Oyanagi, H., Matsushita, T., Ishimura, Y., and Iizuka, T.: "Structural and Electronic Characterization of Oxygenated Hemoproteins by Using XANES Spectroscopy" Biochim. Biophys. Acta. (1992)

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  • [Publications] Sugawara, Y., Kamiya, N., Iwasaki, H., Ito, T., and Satow, S.: "Humidity-Controlled Reversible Structure Transition of DisodiumAdenosine 5'-Triphosphate between Dihydrate and Trihydrate in a single Crystal State." J. Am. Chem. Soc.113. 5440-5445 (1991)

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  • [Publications] Suzuki, M., Sugiura, M., and Ebashi, S.: "Sea urchin proteases specific to the SPKK motif in histone" J. Biochem.108. 347-355 (1990)

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  • [Publications] Suzuki, M., Sohma, H., Yazawa, M., Yagi, K., and Ebashi, S.: "Histone H1 kinase to the SPKK motif" J. Biochem.108. 356-364 (1990)

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  • [Publications] Takahashi, H., Matuoka, S., Kato, S., Ohki, K., and Hatta, I.: "Electrostatic interaction of poly (L-dysine) with dipalmitoylphosphatidic acid studied by x-ray diffraction" Biochim. Biophys. Acta. 1069. 229-234 (1991)

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  • [Publications] Takeuchi, Y., Satow, Y., Nakamura, K. T., and Mitsui, Y.: "Refined Crystal Structure of the Complex of Subtilisin BPN' and Streptomyces Subtilisin Inhibitor at 1.8 A Resolution." J. Mol. Biol.221. 309-325 (1991)

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  • [Publications] Takeuchi, Y., Noguchi, S., Satow, Y., Kojima, S., Kumagai, I., Miura, K., Nakamura, K. T., and Mitsui, Y.: "Molecular Recognition at the Active Site of Subtilisin BPN' : Crystallographic Studies Using Genetically Engineered Proteinaceous Inhibitor SSI (Streptomyces Subtilisin Inhibitor)" Protein Engineering. 4. 501-508 (1991)

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  • [Publications] Tanaka, H., Wakabayashi, K., and Amemiya, Y.: "Changes in the X-ray diffraction pattern from rigor muscles by application of external length changes" Adv. Biophys.27. 105-113 (1991)

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  • [Publications] Tokunaga, F., Watanabe, T., Uematsu, J., Hara, R. and Hara, T.: "Photoreactions of retinochrome at very low temperatures" FEBS Lett.262. 266-268 (1990)

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  • [Publications] Tokunaga, F., Iwasa, T. Miyagishi, M. and Kayaba, S.: "Cloning of cDNA and amino acid sequence of one of chicken cone visual pigments" Biochem. Biophys. Res. Commun.137. 1212-1217 (1991)

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  • [Publications] Tokunaga, M., Sutoh, K., and Wakabayashi, T.: "Structure and Structural Change of the Myosin Head." Adv. Biophys.27. 157-167 (1991)

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  • [Publications] Tregear, R. T., Wakabayashi, K., Tanaka, H., Iwamoto, H., Reedy, M. C. Reedy, M. K., Sugi, H., and Amemiya, Y.: "X-ray and electron microscopy of Lethocerus flight muscle partially relaxed by adenylylimidodiphosphate and ethylene glycol" J. Mol. Biol.214. 129-141 (1990)

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  • [Publications] Ueki, T.: "Biopolymers and Solution X-ray Scattering - Is it Useful in Structural Research in Biology?" Nucl. Instrum. Meth. Phys. Res.A303. 464-475 (1991)

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  • [Publications] Uruga, T., Hamanaka, T., Wakabayashi, K., and Amemiya, Y.: "X-Ray Diffraction and Flash Photolysis Studies of M Intermediate of Lattice-Contracted Purple Membrane" J. Biochem.108. 938-946 (1990)

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  • [Publications] Uruga, T., Hamanaka, T., Kito, Uchida, I., Nishimura, S., and Mashimo, t.: "Effects of Volatile Anesthetics on Bacteriorhodopsin in Purple Membrane, Halobacterium Halobium Cells and Reconstituted Vesicles" Biophys. Chem.41. 157-168 (1991)

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  • [Publications] Vonderviszt, F., Uedaira, H., Kidokoro, S. -I., and Namba, K.: "Structural Organization of Flagellin" J. Mol. Biol.214. 97-104 (1990)

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  • [Publications] Wakabayashi, K., Tanaka, H., Saito, H., Moriwaki, N., Ueno, Y., and Amemiya, Y.: "Dynamic X-ray diffraction of skeletal muscle : Structural change of actin filaments" Adv. Biophys.27. 3-12 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wang, En. -Z., Wakabayashi, K., Iwamoto, H., Tanaka, H., Kobayashi, T., Hamanaka, T., Amemiya, Y., Sugi, H., and Mitsui, T.: "Frequency and temperature dependence of changes in the X-ray diffraction pattern from frog skeletal muscle during sinusoidal length change, studied by using synchrotron radiation" J. Muscle Res. Cell Motil.11. 362-363 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yagi, N.: "Intensification of the first actin layer-line during contraction of frog skeletal muscle." Adv. Biophys.27. 35-43 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yagi, N., Takemori, S., Watanabe, M., Horiuti, K., and Amemiya, Y.: "Effects of 2, 3-butanedione monoxime on contraction of frog skeletal muscles : an X-ray diffraction study." J. Muscle Res. Cell Motility.

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamashita, I., Vonderviszt, F., Noguchi, T. and Namba, K.: "Preparing Well-Oriented Sols of Straight Bacterial Flagellar Filaments for X-ray Fiber Diffraction" J. Mol. Biol.217. 293-302 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yang, W., Hendrickson, W. A., Crouch, R. J., and Satow, Y.: "Structure of Ribonuclease H Phased at 2 A Resolution by MAD Analysis of Selenomethionyl Protein" Science. 249. 1398-1405 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yao, H., Matuoka, S., Tenchov, B., and Hatta, I.: "Metastable ripple phase of fully hydrated dipalmitoyl phosphatidylcholine as studied by small angle x-ray scattering" Biophys. J.59. 252-255 (1991)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1993-03-16  

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