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1991 Fiscal Year Final Research Report Summary

Multiple approaches for the establishment of the basis of Protein Engineering.

Research Project

Project/Area Number 02304062
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field 物質生物化学
Research InstitutionKyushu University

Principal Investigator

IMOTO Taiji  Kyushu Univ., Faculty of Pharmaceutical Sciences Professor., 薬学部, 教授 (90038282)

Co-Investigator(Kenkyū-buntansha) SAKIYAMA Fumio  Osaka Univ. Division of Protein Chemistry Professor., 蛋白質研究所, 教授 (40029947)
OHTSUKA Eiko  Hokkaido Univ., Faculty of Pharmaceutical Sciences Professor., 薬学部, 教授 (80028836)
OHTA Takahisa  Tokyo Univ., Faculty of Agricultural chemistry Professor., 農学部, 教授 (30011844)
IWANAGA Sadaaki  Kyushu Univ., Faculty of Sciences, Professor., 理学部, 教授 (90029942)
ASHIDA Tamaichi  Nagoya Univ., Faculty of Engineerings, Professor., 工学部, 教授 (10029936)
Project Period (FY) 1990 – 1991
KeywordsProtein Engineering / NMR / X-ray crystallography / Replacement of amino acid / Chemical modification / Comparative biochemistry / cDNA / Protein expression system
Research Abstract

We have accomplished various Investigations described below for the establishment of the basis of 'Protein Engineering'.
1, The approach by replacing amino acid : (1) Glu23 residue of T4 endonuclease was proved to be Important in glycosylase activity. (2) Thrl56 residue of H^+ ATPase was found to be important to evoke activity. (3) The structure-function relationship of NADHcytochrome b_5 was examined to understand the cause of hereditary methemoglobinemia. (4) The role of Trp108 in lysozyme on evoking activity became apparent.
2, The approach by constructing expression system of aimed protein : (1) The binding site of bovine tissue factor was present in the region between Gal and EGF domain in blood coagulation factor VII. (2) The active sites and the catalytic mechanism of neutral protease from Bacillus subtilis var. amylosacchariticus were elucidated. (3) The binding mode of L-lysine and ATP with lysyl tRNA synthase from Bacillus stearothermophilus were analyzed.
3, The approach by com … More paring primarx and tertiary structure of proteins : (1) HIs210 residue of lysylendopeptidase was proved to be important in high-selectivity on evoking activity. (2) The relationship between structure and function in phospholipase A_2 from Habu snake was analyzed. (3) The catalytic mechanism of human aldolase was analyzed by preparing its various chimeric proteins. (4) The structure, function and heredity of both triosephosphate isomerase and ribonuclease were examined discussed by the analysis of their module structures.
4, The approach by means of chemical modification : (1) RNase T1 and trypsin became stable by introducing novel polyethyleneglycol and amylose derivative.
5, The approach by use of NMR and X-ray crystallography : (1) The allosteric phenomena of L-lactic acid dehydrogenase from Bifidobacterium longum was analyzed. (2) The tertiary structure of neocarzinostatin was determined by use of NMR and distance geometry algorism. (3) The function of Bowman-Birk protease inhibitor was examined from the X-ray crystallographic analysis of its complex with trypsin. Less

  • Research Products

    (64 results)

All Other

All Publications (64 results)

  • [Publications] T.Ueda: "Preparation and Properties of a Lysozyme Derivative in Which Two Domains Are Cross-Linked Intramolecularly between Trp62 and Asp101." J.Biochem.110. 719-725 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Koga: "Multiple Proteolytic Action of Rat Liver Cathepsin B:Specificities and pH-Dependences of the Endo-and Exopeptidase Activities." J.Biochem.110. 179-188 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Ueda: " ^1H-NMR Study of the Intramolecular Interaction of a Substrate Analogue Attached to Aspartic Acid-101 in Lysozyme." J.Biochem.109. 690-698 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Koga: "Comparative Study in Specificities between Rat Cathepsin L and Papain:Amino Acid Differences at Substrate-Binding Site Are Involved in Their Specificities." J.Biochem.109. 976-982 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Suzuki: "Crystallization and Preliminary Crystallographic Study of Bacterial α-Amylases." J.Biochem.108. 379-381 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Shinoda: "Preliminary Crystallographic Study of Phospholipase A_2 from the Venom of Habu Snake." J.Biochem.107. 84-86 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Suehiro: "Blood Clotting Factor IX Nagoya 3:The Molecular Defect of Zymogen Activation Caused by an Arginine-145 to Histidine Substitution." Thrombosis Res.60. 311-320 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Muta: "Limulus Clotting Factor(Factor C):A Novel Protease that has a Mosaic Structure with Complement-like and Lectin-like Domains." J.Biol.Chem.266. 6554-6561 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yamane: "Crystal structure of Streptomyces ertyraeus trypsin at 2.7Å resolution." J.Biochem.110. 945-951 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Volbeda: "Crystal structure of Penicillium citrinum P1 nuclease at 2.8Å resolution." EMBO J.10. 1607-1618 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Morikawa: "Chemical modification of neutral protease from Bacillus subtilis var.amylosacchariticus:assignment of tyrosyl residues iodinated." Agric.Biol.Chem.55. 2751-2756 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Morikawa: "Dye-sensitized photoxidation of neutral protease from B.subtilis var.amylosacchariticus:assignment of histidine residue oxidized." Agric.Biol.Chem.55. 2099-2104 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Yamashita: "Substrate-Selective Activation of Histidine-Modified Porcine Pancreatic α-Amylase by Chloride Ion." J.Biochem.110. 605-607 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] B.Tonomura: "ATP binding plays a role in the selection of amino acid substrate by aminoacyl-tRNA synthetases." Annals New York Academy of Science. 613. 489-493 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Iwamoto: "Mutation in Ser-174 and the glycine-rich sequence(Gly-149,Gly-150 and Thr-156)in the β subunit of Escherichia coli H^+ATPase." J.Biol.Chem.266. 16350-16355 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Inahara: "Two genes,atpC1 and atpC2 for the γ subunit of Arabidopsis thaliana chloroplast ATP synthtase." J.Biol.Chem.266. 7333-7338 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Koide: "Crystallization of Allosteric L-Lactate dehydrogenase from Thermus caldophilus and preliminary crystallographic data." J.Biochem.109. 6-7 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Ishida: "In vitro and in vivo activities of T4 endonuclease V mutants altered in the C-terminal aromatic region." Biochemistry. 29. 3817-3821 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Oda: "Cloning and Sequence Analysis of cDNA for Trimeresurus flavoviridis Phospholipase A_2 and Consequent Revision of the Amino Acid Sequence" J.Biochem.108. 816-821 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.-Y.Liu: "Purification and Amino Acid Sequence of Basic Protein II,a Lysine-49-Phospholipase A_2 with Low Activity,from Trimeresurus flavoviridis Venom." J.Biochem.107. 400-408 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Tamaoki: "Solution conformational endothelin determined by means of ^1H-NMR spectroscopy and distance geometry calculations." Prot.Engineering.4. 509-518 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Koyama: "The difference in conformation between α-human atrial natriuretic polypeptide,α-hANP,and its derivative,Met(0)-α-hANP,in solution." Prot.Engineering.3. 393-402 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Shirai: "RNase-like domain in DNA-directed RNA polymerase II." Proc.Natl.Acad.Sci.U.S.A.88. 9056-9060 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Takagi: "Evolutionay Origin of Thyroglobulin by Duplication of Esterase Gene." FEBS LETTERS. 282. 17-22 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Kitajima: "Monoclonal antibodies recognizing amino-terminal and carboxyterminal regions of human aldolase A:Probes to detect conformational changes of the enzyme." J.Biochem.109. 544-550 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Kitajima: "Construction and properties of active chimeric enzymes between human aldolase A and B:Analysis of molecular regions which determine isozyme-specific functions." J.Biol.Chem.265. 17493-17498 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Yamasaki: "Some Properties of Ricin D Modified with a Methoxypolyethylene Glycol Derivative." Agric.Biol.Chem.54. 2635-2640 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Yamasaki: "Spectroscopic Analysis of the Interaction of Ricin D with Urea." Agric.Biol.Chem.54. 1987-1994 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Shirabe: "Role of Cysteine Residues in Human NADH-cytochrome b_5 Reductase Studied by Site-directed Mutagenesis." J.Biol.Chem.266. 7531-7536 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yubisui: "Structural Role of Serine 127 in the NADH-binding Site of Human NADH-cytochrome b_5 Reductase." J.Biol.Chem.266. 66-70 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Takasaki: "Strucutral studies on aldolase isozyme though protein engineering.In ISOZYME:Strucutre,Function,and Use in Biology and Medicine." Wiley-liss,Inc., 19 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Go: "In Evolution of Life,"Module organization in proteins and exon Shuffling"" Springer-Verlag, 14 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T. Ueda: "Preparation and Properties of a Lysozyme Derivative in Which Two Domains Are Cross-Linked Intramolecularly between Trp62 and Asp101." J. Biochem.110. 719-725 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H. Koga: "Multiple Proteolytic action of Rat Liver Cathepsin B : Specificities and pH-Dependences of the Endo- and Exopeptidase Activities." J. Biochem.110. 179-188 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Ueda: " ^1H-NMR Study of the Intramolecular interaction of a substrate Analogue Attached to Aspartic Acid-101 in Lysozyme." J. Biochem.109. 690-698 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H. Koga: "Comparative Study in Specificities between Rat Cathepsin L and Papain : Amino Acid Differences at Substrate-Binding Site Are Involved in Their Specificities." J. Biochem.108. 976-982 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A. Suzuki: "Crystallization and Preliminary Crystallographic Study of Bacterial alpha-Amylases." J. Biochem. 108. 379-381 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Shinoda: "Preliminary Crystallographic Study of Phospholipase A_2 from the Venom of Habu Snake." J. Biochem. 107. 84-86 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Suehiro: "Blood Clotting Factor IX Nagoya 3 : The Molecular Defect of Zymogen Activation Caused by an Arginine-145 to Histidine Substitution." Thrombosis Res.60. 311-320 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Muta: "Limulus Clotting Factor (Factor C) : A Novel Protease that has a Mosaic Structure with Complement-like and Lectin-like Domains." J. Biol. Chem.266. 6554-6561 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Koide: "Crystallization of Allosteric L-Lactate dehydrogenase from Thermus caldophilus and preliminary crystallographic data." J. Biochem.109. 6-7 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Ishida: "In vitro and in vivo activities of T4 endonuclease V mutants altered in the C-terminal aromatic region." Biochemistry. 29. 3817-3821 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Oda: "Cloning and Sequence Analysis of cDNA for Trimeresurus flavoviridis Phospholipase A_2 and Consequent Revision of the Amino Acid Sequence" J. Biochem.108. 816-821 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S. -Y. Liu: "Purification and Amino Acid Sequence of Basic Protein II, a Lysine-49-Phospholipase A_2 with Low Activity, from Trimeresurus flavoviridis Venom." J. Biochem.107. 400-408 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Tamaoki: "Solution conformational endothelin determined by means of ^1H-NMR spectroscopy and distance geometry calculations." Prot. Engineering.4. 509-518 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S. Koyama: "The difference in conformation between alpha-human atrial natriuretic polypeptide, alpha-hANP, and its derivative, Met (O)-alpha-hANP, in solution." Prot. Engineering.3. 393-402 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Shirai: "RNase-like domain in DNA-directed RNA polymerase II." Proc. Natl. Acad. Sci. U. S. A.88. 9056-9060 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Takagi: "Evolutionay Origin of Thyroglobulin by Duplication of Esterase, Gene." FEBS LETTERS. 282. 17-22 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Yamane: "Crystal structure of Streptomyces ertyraeus trypsin at 2.7* resolution." J. Biochem.110. 945-951 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A. Volbeda: "Crystal structure of Penicillium citrinum P1 nuclease at 2.8* resolution." EMBO J.10. 1607-1618 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S. Morikawa: "Chemical modification of neutral protease from Bacillus subtilis var. amylosacchariticus : assignment of tyrosyl residues iodinated." Agric. Biol. Chem.55. 2751-2756 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S. Morikawa: "Dye-sensitized photoxidation of neutral protease from B. subtilis var. amylosacchariticus : assignment of histidine residue oxidized." Agric. Biol. Chem.55. 2099-2104 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H. Yamashita: "Substrate-Selective Activation of Histidine-Modified Porcine Pancreatic alpha-Amylase by Chloride Ion." J. Biochem.110. 605-607 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] B. Tonomura: "ATP binding plays a role in the selection of amino acid substrate by aminoacyl-tRNA synthetases." Annals New York Academy of Science. 613. 489-493 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A. Iwamoto: "Mutation in Ser-174 and the glycine-rich sequence (Gly-149, Gly-150 and Thr-156) in the beta subunit of Escherichia coli H^+ ATPase." J. Biol. Chem.266. 16350-16355 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Inahara: "Two genes, atpCl and atpC2 for the gamma subunit of Arabidopsis thaliana chloroplast ATP synthetase." J. Biol. Chem.266. 7333-7338 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Kitajima: "Monoclonal antibodies recognizing amino-terminal and carboxyterminal regions of human aldolase A : Probes to detect conformational changes of the enzyme." J. Biochem.109. 544-550 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Kitajima: "Construction and properties of active chimeric enzymes between human aldolase A and B : Analysis of molecular regions which determine isozyme-specific functions." J. Biol. Chem.265. 17493-17498 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Yamasaki: "Some Properties of Ricin D Modified with a Methoxypolyethylene Glycol Derivative." Agric. Biol. Chem.54. 2635-2640 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Yamasaki: "Spectroscopic Analysis of the Interaction of Ricin D with Urea." Agric. Biol. Chem.54. 1987-1994 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Shirabe: "Role of Cysteine Residues in Human NADH-cytochrome b_5 Reductase Studied by Site-directed Mutagenesis." J. Biol. Chem.266. 7531-7536 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Yubisui: "Structural Role of Serine 127 in the NADH-binding Site of Human NADH-cytochrome b_5 Reductase." J. Biol. Chem.266. 66-70 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Takasaki: "Strucutral Studies on aldolase isozyme though protein engineering." ISOZYME : Strucutre, Function, and Use in Biology and Medicine.Wiley-liss, Inc.(1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Go: ""Module organization in proteins and exon Shuffling"" Evolution of Life. Springer-Verlag. (1991)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1993-03-16  

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