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1993 Fiscal Year Final Research Report Summary

Studies on structure and the biological functions of a large multi-molecular complex "the proteasome"

Research Project

Project/Area Number 03102006
Research Category

Grant-in-Aid for Specially Promoted Research

Allocation TypeSingle-year Grants
Research InstitutionInstitute for Enzyme Research, The University of Tokushima

Principal Investigator

ICHIHARA Akira  Department Enzyme Pathology, The University of Tokushima, Professor, 酵素科学研究センター, 教授 (40035374)

Co-Investigator(Kenkyū-buntansha) TANAKA Keiji  Department Enzyme Pathology, The University of Tokushima, Assistant Professor, 酵素科学研究センター, 助手 (10108871)
YOSHIMURA Tetsuro  Department of Enzyme Regulation, The University of Tokushima, Associate Professo, 酵素科学研究センター, 助教授 (30035472)
Project Period (FY) 1991 – 1993
KeywordsProteasome / Ubiquitin / Energy-dependent proteolysis / Cell cycle / Antigen Processing / Supramolecular complex / Gamma-interferon / MHC classI-restricted antigen presentation
Research Abstract

(1) Structural Analysis of Proteasomes at the Molecular Level : We demonstrated that proteasomes are found as two isoforms in cells. One is the ATP-independent 20S form and the other is an ATP-dependent 26S form. Various physical analyzes showed that molecular masses of these two forms are determined to be approximately 750 kDa and 2000 kDa, respectively. The primary structures of 7 alpha-type and 9 beta-type subunits of the 20S proteasome complex in human, rat and yeast were determined by their cDNA cloning. Based on the homology analysis, we proposed the novel term "the proteasome gene family" for these highly homologous gene groups. Furthermore, we have prepared the large crystals of the bovine 20S proteasome and carried out its preliminary X-ray analysis. By electron microscopy, we proposed the "caterpillar-shape" model for the 26S proteasome, consisting of approximately 50 non-identical subunits. The 26S proteasome was found to be the unusually large supra-molecular complex.
(2) Molecular Functions of Proteasomes : The 26S proteasome was demonstrated to be an ATP-dependent protease catalyzing selective degradation of target proteins conjugated with multiple ubiquitins as the degradation signal. Moreover, we found for the first time that ornithine decarboxylase, a most short-lived enzyme in cells responsible for biosynthesis of polyamines, was degraded ATP-dependently by the 26S proteasome without ubiquitination.
(3) Physiological Functions of Proteasomes : The 26S proteasome degraded various nuclear oncoproteins, such as Mos, Fos and Myc, closely related with cell cycle progression in an ATP-, ubiquitin-dependent fashion, suggesting possible involvement of the proteasome in cell cycle regulation. In addition, we found that gamma-interferon induced proteasomes with different subunit organizations for acquirement of the functional diversity and suggested that proteasoms play an essential role for the MHC class-I restricted antigen processing pathway.

  • Research Products

    (73 results)

All Other

All Publications (73 results)

  • [Publications] Tamura,T.: "Molecular cloning and sequence analysis of cDNAs for five major subunits of human proteasomes (multicatalytic proteinase complexes)." Biochim.Biophys.Acta. 1089. 95-102 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Orino,E.: "ATP-dependent reversible association of proteasomes with multiple protein components to form 26S complexes that degrade ubiquitinated proteins in human HL-60 cells." FEBS Lett.284. 206-210 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tamura,T.: "Improved method for preparation of ubiquitin-ligated lysozyme as substrates of ATP-dependent proteolysis." FEBS Lett.292. 154-158 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ikai,A.: "Electron microscopy of 26S complex containing 20S proteasome." FEBS Lett.292. 21-24 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Lee,D.H.: "Molecular cloning of the yeast proteasome PRS2 gene identical to the suppressor gene scll^+." Biochem.Inter.23. 689-696 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Fujii,G.: "Deduced primary structure of a Xenopus peroteasome subunit XC3 and expression of its mRNA during early development." Biochem.Biophys.Res.Commun.178. 1233-1239 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ahn,J.Y.: "Developmental regulation of proteolytic activities and subunit pattern of 20S proteasome in chick embryonic muscle." J.Biol.Chem.266. 15746-15749 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Lee,H.R.: "Molecular cloning of the ecotin gene in Escherichia coli." FEBS Lett.287. 53-56 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Seol,J.H.: "Protease Do is essential for survival of Escherichia coli at high temperatures:Its identity with the htrA gene product." Biochem.Biophys.Res.Commun.176. 730-736 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kanayama,H.: "Changes in expressions of proteasome and ubiquitin genes in human renal cancer cells." Cancer Res.51. 6677-6685 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Lee,D.H.: "PRS3 encoding an essential subunit of yeast proteasomes homologous to mammalian proteasome subunit C5." Biochem.Biophys.Res.Commun.182. 452-460 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kanayama,H.: "Demonstration that a human 26S proteolytic complex consists of a proteasome and multiple associated protein components and hydrolyzes ATP and ubiquitin-ligated proteins by a closely linked mechanism." Eur.J.Biochem.206. 567-578 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Aki,M.: "cDNA cloning of rat proteasome subunit RC1,a homologue of RING10 located on the human MHC Class II region." FEBS Lett.301. 65-68 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shimbara,N.: "Regulations of gene expression of proteasomes (multi-protease complexes) during growth and differentiation of human hematopoietic cells." J.Biol.Chem.267. 18100-18109 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Murakami,Y.: "Antizyme,a protein induced by polyamines,accelerates the degradation of ornithine decarboxylase in Chinese-hamster overy-cell extracts." Biochem.J.283. 661-664 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Murakami,Y.: "Ornithine decarboxylase is degraded by the 26S proteasome without ubiquitination." Nature. 360. 597-599 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tamura,T.: "Molecular cloning of cDNAs of rat proteasomes:deduced primary structures of four other subunits." J.Biochem.112. 530-534 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ozaki,M.: "Purification and initial characterization of the proteasome from the higher plant spinacia oleracea." J.Biol.Chem.267. 21678-21684 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ugai,S.: "Purification and characterization of the 26S proteasome complex catalyzing ATP-dependent breakdown of ubiquitin-ligated proteins from rat liver." J.Biochem.113. 754-768 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Wada,M.: "Serum concentration and localization in tumor cells of proteasomes in patients with hematologic malignancy and their pathophysiologic significance." J.Lab.Clin.Med.121. 215-223 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shimbara,N.: "Down-regulation of ubiquitin gene expression during differentiation of human leukemia cells." FEBS Lett.322. 235-239 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ishida,N.: "Mos is degraded by the 26S proteasome in a ubiquitin-dependent fashion." FEBS Lett.324. 345-348 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Lee,D.H.: "Structure and properties of the 26S protease complex from chick skeletal muscle." Biochem.Mol.Biol.Inter.30. 121-130 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Park,S.K.: "Sire-directed mutagenesis of the dual translational initiation sites of the ClpB gene of Escherichia coli and characterization of its gene products." J.Biol.Chem.268. 20170-20174 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nishimura,C.: "cDNA cloning of rat proteasome subunit RC7-I,a homologue of yeast PRE1 essential for chymotrypsin-like activity." FEBS Lett.332. 52-56 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Murakami,Y.: "Involvement of the antizyme in ornithine decarboxylase degradation by a reticulocyte lysate." Biochem.J.295. 305-308 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nishimura,C.: "cDNA cloning of rat proteasome subunit RC10-II assuming to be responsible for trypsin-like activity." FEBS Lett.336. 462-466 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Aki,A.: "Interferon-γ induces different subunit organizations and functional diversity of proteasomes." J Biochem.115. 257-269 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,K.: "Degradation of c-Fos by the 26S proteasome is acceralated by c-Jun and multiple protein kinases." Nature. (in press). (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshimura,T.: "Molecular characterization of the“26S"proteasome complex from rat liver." J.Struct.Biol.(in press). (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,K.: "Proteasomes:protein and gene structures.4巻" New Biologist, 173-187 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ichihara,A.: "Regulation of proteasome expression in developing and transformed cells.33巻" Advan.Enzyme Regul., 173-180 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,K.: "The proteasome and ubiquitin-dependent proteolysis.“Biological Functions of Proteases and Inhibitors"" Japan Scientific Societies Press,Tokyo.(in press), (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,K.: "Preparation of proteasomes“Cell Biology:A Laboratory Handbook"" Academic Press,New York,

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,K.: "Molecular properties and the functions of 20S and 26S proteasomes. “Proteasomes/Multicatalytic Proteinase Complexes"" Karger Press,Basel (in press), (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,K.: "The proteasome gene family ECCEAMST series" The European Meat Industry Audet Tijdschritten B.V.,Paris (in press), (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanaka,K.: "The role of proteasomes in antigen processing." J.Leukocyte Biol.(in press), (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tamura, T., Lee, D.H., Osaka, F., Fujiwara, F., Shin, S., Chung, C.H., Tanaka, K., and Ichihara, A.: "Molecular cloning and sequence analysis of cDNAs for five major subunits of human proteasomes (multicatalytic proteinase complexes)." Biochim. Biophys. Acta. 1089. 95-102 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Orino, E., Tanaka, K., Tamura, T., Sone, S., Ogura, T., and Ichihara, A.: "ATP-dependent reversible association of proteasomes with multiple protein components to form 26S complexes that degrade ubiquitinated proteins in human HL-60 cells." FEBS Lett.284. 206-210 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tamura T., Tanaka, K., Tanahashi, N., and Ichihara, A.: "Improved method for preparation of ubiquitin-ligated lysozyme as substrates of ATP-dependent proteolysis." FEBS Lett.292. 154-158 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ikai, A., Nishigai, M., Tanaka, K., and Ichihara, A.: "Electron microscopy of 26S complex containing 20S proteasome." FEBS Lett.292. 21-24 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Lee, D.H., Tamura, T., Chung, C.H., Tanaka, K., and Ichihara, A.: "Molecular cloning of the yeast proteasome PRS2 gene identical to the suppressor gene scll^+." Biochem. Inter.23. 689-696 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Fujii, G., Tashiro, K., Emori, Y., Saigo, K., Tanaka, K., and Shiokawa, K.: "Deduced primary structure of a Xenopus peroteasome subunit XC3 and expression of its mRNA during early development." Biochem. Biophys. Res. Commun.178. 1233-1239 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ahn, J.Y., Hong, S.O., Kwak, K.B., Kang, S.S., Tanaka, K., Ichihara, A., Ha, D.B., and Chung, C.H.: "Developmental regulation of proteolytic activities and subunit pattern of 20S proteasome in chick embryonic muscle." J.Biol. Chem.266. 15746-15749 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Lee, H.R., Seol, J.H., Kim, O,M., Lee, C.S., Suh, S.W., Hong, Y.-M., Tanaka, K., Ichihara, A., Ha, D.B.and Chung, C.H.: "Molecular cloning of the ecotin gene in Escherichia coli." FEBS Lett.287. 53-56 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Seol, J.H., Woo, S.K., Jung, E.M., Yoo, S.J., Lee, C.S., Kim, K., Tanaka, K., Ichihara, A., Ha, D.B., and Chung, C.H.: "Protease Do is essential for survival of Escherichia coli at high temperatures : Its identity with the htr A gene product." Biochem. Biophys. Res. Commun.176. 730-736 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kanayama, H., Tanaka, K., Aki, M., Kagawa, S., Miyaji, H., Satoh, M., Okada, F., Sato, S., Shimbara, N., and Ichihara, A.: "Changes in expressions of proteasome and ubiquitin genes in human renal cancer cells." Cancer Res.51. 6677-6685 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Lee, D.H., Tanaka, K., Tamura, T., Chung, C.H., and Ichihara, A.: "PRS3 encoding an essential subunit of yeast proteasomes homologous to mammalian proteasome subunit C5." Biochem. Biophys. Res. Commun.182. 452-460 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kanayama, H., Tamura, T., Ugai, S., Kagawa, S., Tanahashi, N., Yoshimura, T., Tanaka, K., and Ichihara, A.: "Demonstration that a human 26S proteolytic complex consists of a proteasome and multiple associated protein components and hydrolyzes ATP and ubiquitin-ligated proteins by a closely linked mechanism." Eur. J.Biochem.206. 567-578 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Aki, M., Tamura, T., Tokunaga, F., Iwanaga, S., Kawamura, Y., Shimbara, N., Kagawa, S., Tanaka, K., and Ichihara, A.: "cDNA cloning of rat proteasome subunit RC1, a homologue of RING10 located on the human MHC Class II region." FEBS Lett.301. 65-68 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shimbara, N., Orino, E., Sone, S., Ogura, T., Takashina, M., Shono, M., Tamura, T., Yasuda, H., Tanaka, K., And Ichihara, A.: "Regulations of gene expression of proteasomes (multi-protease complexes) during growth and differentiation of human hematopoietic cells." J.Biol. Chem.267. 18100-18109 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Murakami, Y., Tanaka, K., Matsufuji, S., Miyazaki, Y., and Hayashi, S.: "Antizyme, a protein induced by polyamines, accelerates the degradation of ornithine decarboxylase in Chinese-hamster overy-cell extracts." Biochem. J.283. 661-664 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Murakami, Y., Matsufuji, S., Kameji, T., Hayashi, S., Igarashi, K., Tamura, T., Tanaka, K., and Ichihara, A.: "Ornithine decarboxylase is degraded by the 26S proteasome without ubiquitination." Nature. 360. 597-599 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tamura, T., Shimbara, N., Aki, M., Ishida, N., Bey, F., Scherrer, K., Tanaka, K., and Ichihara A.: "Molecular cloning of cDNAs of rat proteasomes : deduced primary structures of four other subunits." J.Biochem.112. 530-534 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ozaki, M., Fujinami, K., Tanaka, K., Amemiya, Y., Sato, T., Ogura, N., and Nakagawa, H.: "Purification and initial characterization of the proteasome from the higher plant spinacia oleracea." J.Biol. Chem.267. 21678-21684 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, K., Tamura, T., Yoshimura, T., and Ichihara, A.: "Proteasomes : protein and gene structures." New Biologist. 4. 173-187 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ugai, S., Tamura, T., Tanahashi, N., Takai, S., Komi, N., Chung, C.H., Tanaka, K., and Ichihara, A.: "Purification and characterization of the 26S proteasome complex catalyzing ATP-dependent breakdown of ubiquitin-ligated proteins from rat liver." J.Biochem.113. 754-768 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wada, M., Kosaka, M., Saito, S., Sano, T., Tanaka, K., and Ichihara, A.: "Serum concentration and localization in tumor cells of proteasomes in patients with hematologic malignancy and their pathophysiologic significance." J.Lab. Clin. Med.121. 215-223 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shimbara, N., Sato, C., Takashina, M., Tanaka, T., Tanaka, K., and Ichihara, A.: "Down-regulation of ubiquitin gene expression during differentiation of human leukemia cells." FEBS Lett.322. 235-239 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ishida, N., Tanaka, K., Tamura, T., Nishizawa, M., Okazaki, K., Sagata, N., and Ichihara, A.: "Mos is degraded by the 26S proteasome in a ubiquitin-dependent fashion." FEBS Lett.324. 345-348 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Lee, D.H., Kim, S.S., Kim, K.I., Ahn, J.Y., Shim, K.S., Nishigai, M., Ikai, A., Tamura, T., Tanaka, K., Ichihara, A., Ha, D,B., and Chung, C.H.: "Structure and properties of the 26S protease complex from chick skeletal muscle." Biochem. Mol. Biol. Inter.30. 121-130 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Park, S.K., Kim, K.I., Woo, K.M., Seol, J.H., Tanaka, K., Ichihara, A., Ha, D.B., and Chung, C.H.: "Sire-directed mutagenesis of the dual translational initiation sites of the ClpB gene of Escherichia coli and characterization of its gene products." J.Biol. Chem.268. 20170-20174 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nishimura, C., Tamura, T., Tokunaga, F., Tanaka, K., and Ichihara, A.: "cDNA cloning of rat proteasome subunit RC7-I, a homologue of yeast PRE1 essential for chymotrypsin-like activity." FEBS Lett.332. 52-56 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Murakami, Y., Matsufuji, S., Tanaka, K., Ichihara, A.and Hayashi, S.: "Involvement of the antizyme in ornithine decarboxylase degradation by a reticulocyte lysate." Biochem. J.295. 305-308 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nishimura, C., Tamura, T., Tokunaga, F., Tanaka, K., and Ichihara, A.: "cDNA cloning of rat proteasome subunit RC10-II assuming to be responsible for trypsin-like activity." FEBS Lett.336. 462-466 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ichihara, A., Tanaka, K., Andoh, T., and Shimbara, N.: "Regulation of proteasome expression in developing and transformed cells." Advan. Enzyme Regul.33. 173-180 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Aki, A., Shimbara, N., Takashina, M., Kagawa, S., Tamura, T., Tanahashi, N., Yoshimura, T., Tanaka, K., and Ichihara, A.: "Interferon-gamma induces different subunit organizations and functional diversity of proteasomes." J Biochem. (Tokyo). 115. 257-269 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, K., Ishida, N., Tamura, T., Kakizuka, A., Nishida, E., Okumura, E., Kishimoto, T., Inagaki, M., and Ichihara, A.: "Degradation of c-Fos by the 26S proteasome is acceralated by c-Jun and multiple protein kinases." Nature. (in press). (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshimura, T., Kameyama, K., Takagi, T., Ikai, A., Tokunaga, F., Koide, T., Tanahashi, N., Tamura, T., Tanaka, K., Cejka, Z., Baumeister, W., and Ichihara, A.: "Molecular characterization of the "26S" proteasome complex from rat liver." J.Struct. Biol.(in press). (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, K., and Ichihara, A.: "The role of proteasomes in antigen processing." J.Leukocyte Biol.(in press). (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, K., and Ichihara, A.: The proteasome and ubiquitindependent proteolysis."Biological Functions of Proteases and Inhibitors" in press Japan Scientific Societies Press, Tokyo, (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, K., and Ichihara, A.: Preparation of proteasomes. "Cell Biology : A Laboratory Handbook" in press Academic Press, New York, (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, K., and Ichihara, A.: The proteasome gene family. ECCEAMST series in press The European Meat Industry Audet Tijdschritten B.V., Paris, (1994)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1995-03-27  

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