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1994 Fiscal Year Final Research Report Summary

NEW APPROACH FOR RICE GENE MAPPING

Research Project

Project/Area Number 03404005
Research Category

Grant-in-Aid for General Scientific Research (A)

Allocation TypeSingle-year Grants
Research Field Breeding science
Research InstitutionKYUSHU UNIVERSITY

Principal Investigator

IWATA Nobuo  KUYSHU UNIVERSITY,FACULTY OF AGRICUTURE,PROFESSOR, 農学部, 教授 (50038204)

Co-Investigator(Kenkyū-buntansha) YASUI Hideshi  KYUSHU UNIVERSITY,FACULTY OF ASSISTANT PROFESSOR, 農学部, 助手 (70220142)
YOSHIMURA Atsushi  KYUSHU UNIVERSITY,FACULTY OF AGRICULTURE,ASSOCIATE PROFESSOR, 農学部, 助教授 (00182816)
KUHARA Satoshi  KYUSHU UNIVERSITY,GRADUATE SCHOOL OF AGRICULTURE,ASSOCIATE PROFESSOR, 大学院・農学研究科, 助教授 (00153320)
SATOH Hikaru  KYUSHU UNIVERSITY,FACULTY OF AGRICULTURE,ASSOCIATE PROFESSOR, 農学部, 助教授 (70128031)
Project Period (FY) 1991 – 1994
KeywordsRice / Conventional linkage map / RFLP linkage map / Integrated linkage map / Chromosome map / Cytogenetical variants / RAPD markers / RI lines
Research Abstract

To furnish significant information to rice molecular genetrics and breeding, we have integrated the conventional linkage map onto the RFLP linkage map. Twenty-four F_2 populations segregating genetic markers and bacterial blight resistance genes were investigated. Fourty-eight genes for the morphological and physiological traits were successfully mapped on RFLP linkage maps as follows : Chromosome 1, fs-1, d-18, d-2, rl-2, spl-6 and eg, Chromosome 2, tri, bl-1, l-chl (t) and spl-2 ; Chromosome 3, chl-1, fc-1, st (t), dl and spl-3 ; Chromosome 4, d-11, Ph, lg, Xa-1 and Xa-2 ; Chromosome 5, gl-1, xa-5, d-1, st (t), spl-7 and nl-1 ; Chromosome 6, dp-1, spl-4 and Cl ; Chromosome 7, g-1, d-6, spl-5 and v-11 ; Chromosome 8, v-8 and sug, Chromosome 9, I-Bf, dp-2, drp-2 and Dn-1 ; Chromosome 10, spl-10 and pgl ; Chromosome 11, Xa-3, Xa-4, Xa-10, z-2 and v-9 ; and Chromosome 12, spl-1 and rl-1 The orientation of the classical linkage map and the RFLP linkage map was completely understood and the classical linkage map was a little revised from this study. Some RFLP markers were found to be closely linked to the genes for the morphological and physiological traits, indicating that they could be useful for map-assisted selection in rice breeding program and for map-based cloning of the genes as starting points.
The physical association of the linkage map with chromosomes using cytogenetical variants such as reciprocal translocation, tertiary trisomics and acrotrisomics were also examined. The orientation of linkage groups, the arm location of marker genes and inferred regions of centromeres were decided on chromosomes 1,3,4,5,7,9 and 12.
In addition, recombinant inbred (RI) lines were developed as a permanent mapping population for RFLP/RAPD markers. Using the RI lines, landmark linkage map containing 119 RFLP loci and 26RAPD loci were constructed.

  • Research Products

    (42 results)

All Other

All Publications (42 results)

  • [Publications] Nonomura,K.I.,T.Kawasaki,A.Yoshimura,N.Kishimoto and N.Iwata.: "Production of tertiary trisomics and their utilization in rice." Rice Genetics Newsletter. 8. 85-87 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ideta,O.,A.Yoshimura and N.Iwata.: "A secondary-trisomic like plant found in rice." Rice Genetics Newsletter. 8. 87-89 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Wang,Z.X.and N.Iwata.: "Production of n+1 plants and tetrasomics by means of anther culture of trisomic plants in rice(Oryza sativa L.)." Theoretical and Applied Genetics.83. 12-16 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Wang,Z.X.,N.Iwata,Y.Sukekiyo and A.Yoshimura.: "Induction of chromosome aberrants in rice(Oryza sativa L.)by using irradiated pollen." J.Fac.Agr.,Kyushu Univ.36. 99-108 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshimura,S.,A.Yoshimura,A.Saito, N.Kishimoto,M.Kawase,M.Yano,M.Nakagahra,T.Ogawa and N.Iwata: "RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes,Xa-1,Xa-3 and Xa-4." Jpn.J.Genet.67. 29-37 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshimura,S.,A.Yoshimura and N.Iwata.: "Simple and rapid PCR method by using crude extracts from rice seedlings." Japan.J.Breed.42. 669-674 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ikeda,K.,H.Furuumi,A.Yoshimura,H.Yasui and N.Iwata.: "Production and identification of acrotrisomics in rice." Rice Genetics Newsletter. 9. 42-45 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yasui,H.and N.Iwata.: "Acrotrisomics with chromosome 7 in rice." Rice Genetics Newsletter. 9. 45-47 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ideta,O.,A.Yoshimura,T.Matsumoto and H.Tsunematsu and N.Iwata.: "Integration of conventional and RFLP maps in rice.I.Chromosomes 1,2,3and 4." Rice Genetics Newsletter. 9. 128-129 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshimura,S.,R.Nelson,A.Yoshimura,T.W.Mew and N.Iwata.: "RFLP mapping of the bacterial blight resistance genes Xa-3 and Xa-4." Rice Genetics Newsletter. 9. 136-138 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yasui,H.,S.Saiki and N.Iwata.: "A desinaptic gene ds3 (t) located on chromosome 7 in rice." Rice Genetics Newsletter. 10. 80-83 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ideta,O.,A.Yoshimura,T.Matsumoto and H.Tsunematsu,H.Satoh and N.Iwata.: "Integration of conventional and RFLP linkage maps in rice.II.Chromosomes 6,9,10 and 11." Rice Genetics Newsletter. 10. 87-89 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tsunematsu,H.,H.Hasegawa,S.Yoshimura,A.Yoshimura and N.Iwata.: "Construction of an RFLP/RAPD linkage map by using recombinant inbred lines." Rice Genetics Newsletter. 10. 89-90 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nonomura,K.I.,A.Yoshimura,T.Kawasaki and N.Iwata.: "Production of tertiary trisomics in rice (Oryza sativa L.)." Breeding Science. 44. 137-142 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nonomura,K.I.,A.Yoshimura,and N.Iwata: "Regional location of RFLP linkage groups on pachytene chromosomes 1,3,4,9,and 12." Rice Genetics Newsletter. 11(in press).(1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ideta,O.,A.Yoshimura,M.Ashikari,H.Satoh and N.Iwata.: "Integration of conventional and RFLP maps in rice.III.Chromosomes 5,7,8,and 12." Rice Genetics Newsletter. 11(in press).(1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Wang,Z.X.,Y.Sukekiyo.A.Yoshimura and N.Iwata.: "A deficiency for rice chromosome 4." Rice Genetics Newsletter. 11. (in press) (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshimura,S.,A.YoshImura,R.Nelson,T.W.Mew and N.Iwata.: "Tagging Xa-1 the bacterial blight resistance gene in rice,by using RAPD markers." Breeding Sciencs(in press).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshimura,S.,A.Yoshimura,R.Nelson,McCouch,M.Abenes,M.Baraoidan,T.W.Mew and N.Iwata.: "Tagging and combining b acterial blight resistance genes in rice using RAPD and RFLP markers." Molecular Breeding(accepted).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshimura,S.,A.Yoshimura,N.Iwata,A.Saito,N.Kishimoto,M.Kawase,M.Nakagahra and M.Yano: "Restriction fragment length polymorphism analysis of size of chromosomal segments retained around bacterial blight resistance genes in near isogenic lines of rice.In Rice Genetics II" IRRI,Manila,668-760 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Wang,Z.X.and N.Iwata: "Producti on of aneuploids(2n=13)in rice Oryza sativa L.by anther culture of trisomic plants.In Rice Genetics II" IRRI,Manila,687-688 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 吉村 淳,岩田伸夫: "イネの連鎖地図・RFLP地図・染色体地図.育種学最近の進歩第34集" 養賢堂,23-28 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suzuki,T.,T.Takagi,S.Kuhara,M.Kanehisa: "Development of an integrated database for genome mapping and nucleotide sequences.In Proceedings of the 27th Hawaii International Conference on System Science" IEEE Computer Society Press,68-76 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nonomura, K.I., T.Kawasaki, A.Yoshimura, N.Kishimoto and N.Iwata.: "Production of tertiary trisomics and their utilizaiton in rice." Rice Genetics Newsletter. 8. 85-87 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ideta, O., A.Yoshimura and N.Iwata.: "A secondary-trisomic likeplantfound in rice." Rice Genetics Newsletter. 8. 87-89 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wang, Z.X.and N.Iwata.: "Production of n+1 plants and tetrasomics by means of anther culture of trisomic plants in rice (Oryza sativa L.)" Theor.Appl.Genet.83. 12-16 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wang, Z.X., N.Iwata, Y.Sukekiyo and A.Yoshimura.: "Induction of chromosome aberrants in rice (Oryza sativa L.) by using irradiated pollen." J.Fac.Agr., Kyushu Univ.36. 99-108 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshimura, S., A.Yoshimura, A.Saito, N.Kishimoto, M.Kawase, M.Yano, M.Nakagahra, T.Ogawa and N.Iwata.: "RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4." Jpn.J.Genet.67. 29-37 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshimura, S., A.Yoshimura and N.Iwata.: "Simple and rapid PCR method by using crude extracts from rice seedlings." Japan.J.Breed.42. 669-674 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ikeda, K., H.Furuumi, A.Yoshimura, H.Yasui and N.Iwata.: "Production and identification of acrotrisomics in rice." Rice Genetic Newsletter. 9. 42-45 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yasui, H.and N.Iwata. Acrotrisomics with chromosome 7 in rice.: Rice Genetics Newsletter. 9. 45-47 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ideta, O., A.Yoshimura, T.Matsumoto and H.Tsunematsu and N.Iwata.: "Integration of conventional and RFLP maps in rice. I.Chromosomes 1,2,3 and 4." Rice Genetics Newsletter. 9. 128-129 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshimura, S., R.Nelson, A.Yoshimura, T.W.Mew and N.Iwata.: "RFLP mapping of the bacterial blight resistance genes Xa-3 and Xa-4." Rice Genetics Newsletter. 9. 136-138 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yasui, H., Saiki and N.Iwata.: "A desinaptic gene ds3 (t) located on chromosome 7 in rice." Rice Genetics newsletter. 10. 80-83 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ideta, O., A.Yoshimura, T.Matsumoto and H.Tsunematsu, H.Satoh and N.Iwata.: "Integration of Conventional and RFLP linkage maps in rice. II.Chromosomes 6,9,10 and 11." Rice Genetics Newsletter. 10. 87-89 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tsunematsu, H., H.Hasegawa, S.Yoshimura, A.Yoshimura and N.Iwata.: "Construction of an RFLP/RAPD linkage map by using recombinant inbred lines." Rice Genetics Newsletter. 10. 89-90 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nonomura, K.I., A.Yoshimura, T.Kawasaki and N.Iwata.: "Production of tertiary trisomics in rice (Oryza sativa L.)" Breeding Science. 44. 137-142 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nonomura, K.I., A.Yoshimura and N.Iwata.: "Regional location of RFLP linkage groups on pachytene chromosomes 1,3,4,9 and 12." Rice Genetics Newsletter. 11 (in press). (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ideta, O., A.Yoshimura, M.Ashikari, H.Satoh and N.Iwata.: "Integration of conventional and RFLP maps in rice. III.Chromosomes5,7,8 and 12." Rice Genetics Newsletter. 11 (in press). (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wang, Z.X., Y.Sukekiyo, A.Yoshimura and N.Iwata.: "A deficiency for rice chromosome 4." Rice Genetics Newsletter. 11 (in press). (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshimura, S., A.Yoshimura, R.Nels on, T.W.Mew and N.Iwata.: "Tagging Xa-1, the bacterial blight resistance gene in rice, by using RAPD markers." Breeding Sciencs. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshimura, S., A.Yoshumura, R.Nelson, McCouch, M.Abenes, M.Baraoidan, T.W.Mew and N.Iwata.: "Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers." Molecular Breeding. (accepted).

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1996-04-15  

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