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1997 Fiscal Year Final Research Report Summary

Millisecond Order Dynamics of Protein Crystal Structure Using Syncrotron Radiation.

Research Project

Project/Area Number 05244104
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Research InstitutionFoundation for Advancement of International Science (1997)
University of Tsukuba (1994-1996)
National Laboratory for High Energy Physics (1993)

Principal Investigator

SAKABE Noriyoshi  Foundation for Advancement of International Science Resercher, 研究開発部, 専任研究員 (30022601)

Co-Investigator(Kenkyū-buntansha) SAKABE Kiwako  Foundation for Advancement of International Science Resercher, 専任研究員
TANOKURA Masaru  Biotechnology Research Center, University of Tokyo Professor, 生物生産工学研究センター, 教授 (60136786)
EBASHI Setsuro  Pkazaki National Research Institute Honarary Professor, 生理研, 名誉教授 (10009863)
MITSUI Yukio  Department of Bio Engineering, Nagaoka University of Rechnology Professor, 生物系, 教授 (40012637)
YAMANE Takashi  Graduate School of Engineering, Nagoya Univ.Professor, 工学部, 教授 (80030055)
Project Period (FY) 1993 – 1997
KeywordsTime resolved Laue / millisecond / Synchrotron Radiation / process of reaction / white x-ray / dynamic protein structure / time resolution / X-ray analysis
Research Abstract

Contrary to the prevailing idea that x-ray crystal structure analyzes elucidate only the static aspects of structures, the present project aims at elucidating the time dependent structures of proteins in their processes of reaction at a millisecond order time-resolution and thus understanding such processes of reaction in terms of three-dimensional structur change by Laue method. We have challenged this difficult study for 4 years from 1993 to 1996, extensively. At the end of this research project, we can summarize our success in following five items ; (1) construction of a data collection system based on a macromolecule-oriented time-resolved Laue camera which we can also use for Weissenberg camera with monochromatic X-rays at the bending magnet beam line BL-18B in the PF,(2) development of data processing software based on the Laue suites of CCP4, (3) establishment of various supporting techniques including application tequnique of various softwares for X-ray crystal structure analys … More is and crystallization techniques especially membrane protein, (4) comming close to elucidate the reaction process by the time-resolved Laue method, (5) Structure analyzes of many proteins reaction proccess of which are very important to study. One of the most prominent result of these structure analyzes is that of cytocrome c oxydase from beef by prof.Tsukahara.
Finally above instrument and techniques were applied to study the several kinds of protein systems including haem proteins, RNA degrading enzymes, and nucleotide-binding proteins in terms of their reaction and control mechanism. The most prominent work is the elucidating time dependent structure of glutatione syntheses by Prof.Oda. These results are reported in the final project report with publications and minute books publised by the advisery group leaded by Prof.S Ebashi for 5 years where it shows how a new field has been developed by the corporation of specialists from various scientific field, such as physics, crystallography, organic synthesis, physical chemist, MNR specialist, biochamist, theoretical physicist and spectroscopists, and a brief content of publications and symposiums. Less

  • Research Products

    (16 results)

All Other

All Publications (16 results)

  • [Publications] 坂部知平, 坂部貴和子, 渡辺信久: "Time-Resolved Protein Crystallography with LOT An Application of Protein Data Collection System with Weissenberg Techninque and Large Imaging" J.S.R.4. 14-16 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 坂部貴和子, 渡辺信久, 坂部知平: "Large-Format Imaging Plate and Weissenberb Camera for Accurate Protein Crystallographic Data Collection Using Synchrotron" J.S.R. 4. 136-146 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 山根隆, 芦田玉一: "Crystal structure of stroptomyces eryzhracus trypsin at 1.9A Resolution" J.Biochem. 118. 882-894 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 三井幸雄: "Crystal structure of the binary and ternary complexes of 7α-hydroxy-steroid dehydrogonase from E-coli" Biochemistry. 35. 7715-7724 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 大沢文夫: "Sliding and AtPase" J.Biochem. 118. 863-870 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 田之倉優: "Crystal structure of ribonuclease Tl carbosy meihylated at Glu58 in complex with 2GHP" Biochemistry. 35. 1829-8334 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 京極好正: "構造生物学とその解析法" 共立出版社, 192 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 江橋, 三井利夫, 坂部: "Synchirotron Radiation in Biosciences" Oxford Science Publisher, 784 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kamiya, N., K.Sasaki, N.Watanabe, N.Sakabe & K.Sakabe: "Time-Resolved Protein Crystallography with Large-Angle Oscillations : an Application of a Protein Data-Collection System Uning the Weissenberg Technique and a Large Format Imaging Plate" J.Synchrotron Rad.4(1). 14-16 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sakabe K., K.Sasaki, N.Watanabe, M.Suzuki, Z.G.Wang, J.Miyahara & N.Sakabe: "Large-Format Imaging Plate and Weissenberg Camera for Accurate Protein Crystallographic Data Collection Using Synchrotron Radiation" J.Synchrotron Rad.4. 136-146 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Yamane, A.Iwasaki, A.Suzuki, T.Ashida, Y.Kawata, F.Sakiyama: "Crystal Structure of Streptomyces erythracus Trypsin at 1.9A Resolution" J.Biochem.118. 882-894 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, N.Nonaka, T., Tanabe, T., Yoshimoto, T., Tsuru, D.and Mitsui, Y: "Crystal structure of the binary and ternary complexes of 7a-hydroxy-steroid dehydrogesase from E.coli" Biochemistry. 35. 7715-7724 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] F.Oosawa: "Sliding and ATPase" L.Bioche.118. 863-87019 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ishikawa, K.Suzuki, E.Tanokura, M.and Takahashi, K.: "Crystal structure of ribonuclease T1 carboxymethylated at Glu58 in Complex with 2'GMP." Biochemistry. 35. 8329-8334 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Edited by B.Chance, J.Deisenhofer, S.Ebashi, D.T.Goodhead, J.R.Helliwell, H.E.Huxley, T.Iizuka, J.Kirz, T.Mitsui, E.Rubenstein, N.Sakabe, T.SASAKI,G.Schmahl, H.B.Stuhrmann, K.Wutrich and G.Zaccai: Synchrotron Radiation in the Biosciences. Oxford Science Publications, 784 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Kyougoku and T.Tsukihara: Structural Biology and three dimensional structure analysis by X-ray and NMR (Japanese). Kyouritsu Publisher, 192 (1997)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1999-03-16  

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