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1997 Fiscal Year Final Research Report Summary

Structural study on the mechanism of the signal transduction mediated by the Ras protein

Research Project

Project/Area Number 06404080
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionThe University of Tokyo

Principal Investigator

YOKOYAMA Shigeyuki  The University of Tokyo Graduate School of Science Professor, 大学院・理学系研究科, 教授 (00159229)

Co-Investigator(Kenkyū-buntansha) MUTO Yutaka  The University of Tokyo Graduate School of Science Lecturer, 大学院・理学系研究科, 講師 (30192769)
Project Period (FY) 1994 – 1997
KeywordsRas / Signal transdution / RalGDS / RGL / Raf-1 / mSosl / PC12 cells / NMR / regional polysterism
Research Abstract

Several different types of GTP-dependent Ras-binding domains have been identified so far for the GAP/NF1 family, the Raf family, PI3K,RalGDS,and so on, but no apparent sequence homology have been elucidated for them. It is expected that a mutant Ras protein with a binding specificity restricted to a subset of those target proteins is a useful tool for analysis of the complicated Ras signaling pathways. In this study, we made Ha-Ras mutants carrying substitution (s) in the region of residues 21-71, and tested their abilities for association with different Ras-binding domains. Actually, we found several mutants that bind to a restricted range of targets. An NMR analysis showed that some of these mutants do not exhibit the "regional polysterism", which has been observed for the GTP-bound from of the wild-type Ras protein. Therefore, we propose that the "regional polysterism" of Ras allows the binding to various target molecules. In fact, we found that the Ras protein takes only a single conformation in a complex with the "Ras-binding domain (RBD) " of Raf-1 or of RGL.
Some mutations of Ras within its "activator region" whose conformations are unaffected by GDP/GTP exchenge, were found to be involved in the binding to another Ras-binding domain, the "Cry-rich domain (CRD), " of Raf-1. Furthermore, these mutations in the activator regions of Ras were found to impair the ability of Ras to activate the Raf-1 kinase activity. Thus, the Raf-1 activation is found to require Res to bind to both RBD and CRD.Furthermore, replacement of the reside (Glu) at position 31 of Ras with Lys increased the Raf-1 CRD binding activity abnormally and inhibited the Raf-1 activation ability of Ras.

  • Research Products

    (47 results)

All Other

All Publications (47 results)

  • [Publications] Yamasaki, K.: "Site-Directed Mutagenesis Fluorescence and Two-Dimensional NMR Studies on Microenvironment of Effector-Region Aromatic Residues of Human c-Ha-Ras Protein" Biochemistry. 33. 65-73 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shirouzu, M.: "Mutations that Abolish the Ability of Ha-Ras to Associate with Raf-1" Oncogene. 9. 2153-2157 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ymanoto-Honda, R.: "Upstream Mechanisms of Glycogen Synthase Activation by Insulin and Insulin-like Growth Factor-I" J.Biol.Chem.270・6. 2729-2734 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Fujita-Yoshigaki, J.: "A Constitutive Effector Region on the C-Terminal Side of Switch I of the Ras Protein" J.Biol.Chem.270・9. 4661-4667 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kitagawa, T.: "Cell-Free Synthesis and Amino Acid-Selective Stable-Isotope Labeling of Protein for NMR Analysis" J.Biomol.NMR.6. 129-134 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] HU, C.-D.: "Cysteine-rich Region of Raf-1 Interacts with Activator Domain of Post-Transcriptionally Modified Ha Ras" J.Biol.Chem.270・51. 30274-30277 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Akashi, S.: "Detection of Molecular Ions of Non-Covalent Complexes of Ras・GDP and Ras・GppNp by MALDI-TOFMS" J.Mass Spectrom.Soc.Jpn. 44・2. 269-277 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Akasaka, K.: "Differential Structural Requirements for Interaction of Ras Pritein with Its Distinct Downstream Effectors" J.Biol.Chem.271・10. 5353-5360 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ishima, R.: "Gaussian Spectral-Density Function for Protein Internal Motions" J.Magn.Reson.Ser.B. 111. 281-284 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ishima, R.: "Gaussian Spectral-Density Function for Protein Internal Motions" J.Magn.Reson.Ser.B. 111. 281-284 (1996)Shinkai, M.:

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] "Difference in the Mechanism of Interaction of Raf-1 and B-Raf with H-Ras" Biochem.Biophys.Res.Commun.223・3. 729-734 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kim, D.-M.: "A Highly Efficient Cell-free Protein Synthesis System from Escherichia coli" Eur.J.Biochem.239. 881-886 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Smith, B.O.: "An Approach to Global Fold Determination Using Limited NMR Data from Larger Proteins Selectively Protonated at Specific Residue Types" J.Biomol.NMR. 8・3. 360-368 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yokomizo, H,: "Augmentation of Immune Response by an Analog of the Antigenic Peptide in a Human T-cell Clone Recognizing Ras-derived Peptides" Human Immunology. 52. 22-32 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hu, C.-D.: "Coassociation of Rap1A and Ha-Ras with Raf-1 N-terminal Region Interferes with Ras-dependent Activation of Raf-1" J.Biol.Chem.272・18. 11702-11705 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Koshiba, S.: "The Solution Structure of the Pleckstrin Homology Domain of Mouse Son-of Sevenless 1(mSos1)" J.Mol.Biol.269・4. 579-591 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ito, Y.: "The "Regional Polysterism"in the GTP-bound From of the Human c-Ha-Ras Protein" Biochemistry. 36・30. 9109-9119 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Akashi, S.: "Characterization of the Structural Difference between Active and Inactive Forms of the Ras Protein by Chemical Modification Followed by Mass Spectrometric Peptide Mapping" Analytical Biochemistry. 248. 15-25 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Adachi, H.: "Dictyostelium IQGAP-related Protein Specifically Involved in the Completion of Cytokinesis" J.Cell Biol.137. 891-898 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kinoshita, T.: "Raf/MAPK and rapamycin-sensitive pathways mediate the anti-apoptitic function of p21Ras in IL-3-dependent hematopoietic cells" Oncogene. 15. 619-627 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yabuki, T.: "Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis" J.Biomol.NMR.,in press.

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kim, J-H.: "Activation of Ras and its dowsstream extracellular signal-regulated protein kinases by the CDC25 homology domain of mouse Son-of-sevenless 1(mSos1)" Oncogene,16,in press.

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shirouzu, M.: "Interactions of the amino acid residue at position 31 of the c-Ha-Ras protein with Raf-1 and RalGDS" J.Biol.Chem.273. 7743-7748 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Iwahara, J.: "A helix-turn-helix structure unit in human centromere protein B(CENP-B)" The EMBO Journal. 17・3. 827-837 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Yamasaki, M.Shirouzu, Y.Muto, J.Fujita-Yoshigaki, H.Koide, Y.Ito, G.Kawai, S.Hattori, S.Yokoyama, S.Nishimura and T.Miyazawa: "Site-Directed Mutagenesis, Fluorescence and Two-Dimensional NMR Studies on Microenvironment of Effector-Region Aromatic Residues of Human c-Ha-Ras Protein" Biochemistry. 33. 65-73 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Shirouzu, H.Koide, J.Fujita-Yoshigaki, H.Oshio, Y.Toyama, K.Yamasaki, S.A.Fuhrmau, E.Villafranca, Y.Kaziro and S.Yokoyama: "Mutations that Abolish the Ability of Ha-Ras to Associate with Raf-1" Oncogene. 9. 2153-2157 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] R.Yamamoto-Honda, K.Tobe, Y.Kaburagi, K.Ueki, S.Asai, M.Yachi, M.Shirouzu, J.Yodoi, Y.Akanuma, S.Yokoyama, Y.Yazaki and T.Kadowaki: "Upstream Mechanisms of Glycogen Synthase Activation by Insulin and Insulin-like Growth Factor-I" J.Biol.Chem. 270 (6). 2729-2734 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J.Fujita-Yoshigaki, M.Shirouzu, Y.Ito, S.Hattori, S.Furuyama, S.Nishimura and S.Yokoyama: "A Constitutive Effector Region on the C-Terminal Side of Swith I of the Ras Protein" J.Biol.Chem. 270 (9). 4661-4667 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Kigawa, Y.Muto and S.Yokoyama: "Cell-Free Synthesis and Amino Acid-Selective Stable-Isotope Labeling of Protein for NMR Analysis" J.Biomol.NMR. 6. 129-134 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] C.-D.Hu, K.Kariya, M.Tamada, K.Akasaka, M.Shorouzu, S.Yokoyama and T.Kataoka: "Cysteine-rich Region of Raf-1 Interacts with Activator Domain of Post-transcriptionally Modified Ha-Ras" J.Biol.Chem. 270 (51). 30274-30277 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Akachi, M.Shirouzu, S.Yokoyama and K.Takio: "Detection of Molecular Ions of Non-Covalent Complexes of Ras-GDP and Ras-GppNp by MALDI-TOFMS" J.Mass Spectrom.Soc.Jpn.44 (2). 269-277 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Akasaka, M.Tamada, F.Wang, K.Kariya, F.Shima, A.Kikuchi, M.Yamamoto, M.Shirouzu, S.Yokoyama and T.Kataoka: "Differential Structural Requirements for Interaction of Ras Protein with Its Distinct Downstream Effectors" J.Biol.Chem. 271 (10). 5353-5360 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] R.Ishima, J.Iwahara, S.Yokoyama and K.Nagayama: "Gaussian Spectral-Density Function for Protein Internal Motions" J.Magn.Reson.Ser.B.111. 281-284 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Shinkai, T.Masuda, K.Kariya, M.Tamada, M.Shirouzu, S.Yokoyama and T.Kataoka: "Difference in the Mechanism of Interaction of Raf-1 and B-Raf with H-Ras" Biochem.Biophys.Res.Commun. 233 (3). 729-734 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] D.-M.Kim, T.Kigawa, C.-Y.Choi and S.Yokoyama: "A Highly Efficient Cell-free Protein Synthesis System from Escherichia coli" Eur.J.Biochem. 239. 881-886 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] B.O.Smith, Y.Ito, A.Raine, S.Teichmann, L.Ben-Tovim, D.Nietlispach, R.W.Broadhurst, T.Terada, M.Kelly, H.Oschkinat, T.Shibata, S.Yokoyama and E.D.Laue: "An Approach to Global Fold Determination Using Limited NMR Data from Larger Proteins Selectively Protonated at Specific Residue Types" J.Biomol.NMR. 8 (3). 360-368 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Yokomizo, S.Matsushita, S.Fujisao, S.Murakami, H.Fujita, M.Shirouzu, S.Yokoyama, M.Ogawa and Y.Nishimura: "Augmentation of Immune Response by an Analog of the Antigenic Peptide in a Human T-cell Clone Recognizing Mutaed Ras-derived Peptides" Human Immunology. 52. 22-32 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] C.-D.Hu, K.Kariya, G.Kotani, M.Shirouzu, S.Yokoyama and T.Kataoka: "Coassociation of Rap1A and Ha-Ras with Raf-1 N-terminal Region Interferes with Ras-dependent Activation of Raf-1" J.Biol.Chem.272 (18). 11702-11705 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Koshiba, T.Kigawa, J.-H.Kim, M.Shirouzu, D.Bowtell and S.Yokoyama: "The Solution Structure of the Pleckstrin Homology Domain of Mouse Son-of-Sevenless 1 (mSos1)" J.Mol.Biol.269 (4). 579-591 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Ito, K.Yamasaki, J.Iwahara, T.Terada, A.Kamiya, M.Shirouzu, Y.Muto, G.Kawai, S.Yokoyama, E.D.Laue, M.Walchli, T.Shibata, S.Nishimura and T.Miyazawa: "The "Regional Polysterism" in the GTP-bound Form of the Human c-Ha-Ras Protein" Biochemistry. 36 (30). 9109-9119 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Akashi, M.Shirouzu, T.Terada, Y.Ito, S.Yokoyama and K.Takio: "Characterization of the Structural Difference between Active and Inactive Forms of the Ras Protein by Chemical Modification Followed by Mass Spectrometric Peptide Mapping" Analytical Biochemistry. 248. 15-25 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Adachi, Y.Takahashi, T.Hasebe, M.Shirouzu, S.Yokoyama and K.Sutoh: "Dictyostelium IQGAP-related Protein Specifically Involved in the Completion of Cytokinesis" J.Cell Biol.137. 891-898 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Kinoshita, M.Shirouzu, A.Kamiya, K.Hashimoto, S.Yokoyama and A.Miyajima: "Raf/MAPK and rapamycin-sensitive pathways mediate the anti-apoptotic function of p21Ras in IL-3-dependent hematopoietic cells" Oncogene. 15. 619-627 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Yabuki, T.Kigawa, N.Dohmae, K.Takio, T.Terada, Y.Ito, E.D.Laue, J.A.Cooper, M.Kainosho, and S.Yokoyama: "Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis" J.Biomol.NMR.(in press.). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J-H.Kim, M.Shirouzu, T.Kataoka, D.Bowtell, and S.Yokoyama: "Activation of Ras and its downstream extracellular signal-regulated protein kinases by the CDC25 homology domain of mouse Son-of-sevenless 1 (mSos1)" Oncogene. 16, (in press). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Shirouzu, K.Morinaka, S.Koyama, C.-D.Hu, N.Hori-Tamura, T.Okada, K.Kariya, T.Kataoka, A.Kikuchi, and S.Yokoyama: "Interaction of the amino acid residue at position 31 of the c-Ha-Ras protein with Raf-1 and Ra1GDS" J.Biol.Chem.273. 7743-7748 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J.Iwahara, T.Kigawa, K.Kitagawa, H.Masumoto, T.Okazaki and S.Yokoyama: "A helix-turn-helix structure unit in human centromere protein B (CENP-B)" The EMBO Journal. 17 (3). 827-837 (1998)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1999-03-16  

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