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1996 Fiscal Year Final Research Report Summary

Molecular manipulation of oxygen binding proteins and new development of precise structure-function studies on them

Research Project

Project/Area Number 07308071
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section総合
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

IMAI Kiyohiro  Osaka University, Medical School, Associate Professor, 医学部, 助教授 (50028528)

Co-Investigator(Kenkyū-buntansha) NAGAI Masako  Kanazawa University, Medical School, Professor, 教授 (60019578)
KITAGAWA Teizo  Okazaki National Research Institutes, Institute for Molecular Science, Professor, 教授 (40029955)
IIZUKA Tetsutaro  Institute of Physical and Chemical Research, Chief Scientist, 主任研究員 (30029475)
MORISHIMA Isao  Kyoto University, Postgraduate school of Engineering, Professor, 大学院・工学研究科, 教授 (50026093)
MORIMOTO Hideki  Osaka University, Faculty of Engineering Science, Associate Professor, 基礎工学部, 助教授 (20029474)
Project Period (FY) 1995 – 1996
KeywordsOxygen binding proteins / Hemoglobin / Myoglobin / Artificial mutation / Molecular spectroscopy / Molecular evolution / Molecular dynamics
Research Abstract

From the present project the following results were obtained. 1.Control of oxygen affinity of hemoglobin (Hb) with cooperativity preserved by means of artificial mutations (Imai), 2.determination of microscopic oxygen equilibrium constants and test of Mg^<2+> and Cr^<3+>-porphyrins as the model for deoxy-and oxyhemes using metal-substituted hybrid Hbs (Morimoto), 3.constitution of novel globins by module exchanges and analysis of ligand binding kinetics of myoglobin (Mb) with intramolecular disulfide bond (Morishima), 4.identification of the fifth axial ligand for the oxygen sonsor protein FixL of root nodule bacterium (Iizuka), 5.detection of structural differences at the alpha1-beta2 contacts between HbNO (+IHP) T-state and deoxyHb T-state by means of ultraviolet resonance Raman spectroscopy (Kitagawa), 6.identification of the amino acid residues contributing to the negative CD band at 287 nm as a T-state marker using mutant and chemically modified Hbs (Nagai), 7.comparison between n … More eutron diffraction data for Mb crystal and temperature-dependence data of fluctuation obtained by applying the precision normal mode analysis to X-ray diffraction data for Mb crystal (Go), 8.the role of heme group in the folding process of Mb studied by stopped-flow method using various optical probes (Kihara), 9.changes in heme-globin contacts cause only small effects on Mb functions whereas introduction of nitrogen atoms into the meso position of porphyrin causes drastic effects on Mb functions (Neya), 10.the giant size of the annelid Hb is maintained by lectin-like sugar adhesion via linker chains and determination of the location of the linker chains in the Hb molecule (Gotoh), 11.Mb from turban shell shows high homologous with indoleamine 2,3-dioxygenase, suggesting that the former evolved from the latter (Suzuki), 12.the autooxidation of Cerithidea Mb is accompanied with dimer-to-monomer conversion (Shikama) and 13.the oxygen equilibrium curve for human fetal Hb is optimized to attain highly efficient oxygen transport under low oxygen pressure environments while that for human adult Hb is optimized to utilize the Bohr effect at maximum (Kobayashi). Less

  • Research Products

    (53 results)

All Other

All Publications (53 results)

  • [Publications] K. Imai: "Oxygen binding properties of Eudistylia vancouverii chlorocruorin and its dodecamer subunit." Comp. Biochem. Physiol.113B. 613-618 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 今井清博: "血圧制御素子としてのヘモグロビン" パリティ. 11. 45-47 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S-Y. Park: "High-resolution crystal structure of magnesium (MgII) -iron (FeII) hybrid hemoglobin with liganded beta subunits." J. Mol. Biol.255. 726-734 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Unzai: "Oxygen equildbrium properties of chromium (III) iron- (II) hybrid hemoglobins." J. Biol. Chem.271(21). 12451-12456 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T. Matsui: "Preparation and reaction of myoglobin mutants bearing both proximal cystein ligand and hydrophobic distal cavity." Biochemistry. 35. 13118-13124 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T. Uchida: "Effects of the Intramolecular Disulfide Bond on Ligand Binding Dynamics in Myoglobin." Biochemistry. 36. 324-332 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Sunada: "Calculation of NMR order parameters in proteins by normal mode analysis." J. Chem. Phys.104. 4768-4775 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Sunada: "Calculation of NMR order parameters in proteins by normal mode analysis.2 : Contribution from localized high frequency motions." J. Chem. Phys.105. 6560-6564 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T. Iwai: "Dose-response curve for anaesthetics based on the Monod-Wyman-Changeux model." British. J. Anaesthesia. 77. 517-521 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] G. V. Semisotnov: "Globulization during Protein Folding Studied by Synchrotron Small-Angle X-Ray Scattering." J. Mol. Biol.262(4). 559-574 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Neya: "Functional comparison of rhe myoglobins reconstituted with symmetric deuteohemes." Biochim, Biophys. Acta. 1296. 245-249 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 根矢三郎: "ミオグロビン内部ヘムのダイナミクス" 蛋白質核酸酵素. 40. 1115-1121 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K. Tamura: "Nature of endogenous ligand binding to heme iron in oxygen sensor FixL." J. Am. Chem. Soc.118. 9434-9435 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Neya: "Remarkable Functional aspects of the myoglobin induced by diazaheme prostyeric group." Biochim. Biophys. Acta. (in press).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Hirota: "Observation of multiple CN-isotope-sensitive Raman bands for CN-adducts of hemoglobin, myoglobin, and cytochrome c oxidase ; Evidence for vibrational coupling between the Fe-C-N bending and porphyrin in-plain modes." J. Phys. Chem.100. 15274-15279 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Hirota: "Perturbation of the Fe-O_2 bond by near-by residues in heme pocket : Observation of ν Fe-O2 Raman bands for oxymyoglobin mutants." J. Am. Chem. Soc.118. 7845-7846 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Nagai: "Ultaraviolet resonance Raman Studies of hemoglobin quaternary structure using a tyrosine-α42mutant : Changes in the α_1 β_2 subnit interface upon rhe T→R transitis" J. Mol. Struc.379. 65-75 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N. Nagai: "Ultaraviolet resonance Raman Studies of Quaternary structure of hemoglobin using a tryptphan β 37 mutant." J. Biol. Chem.270. 1636-1642 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K. Matsubara: "Wheat germ agglutinin-rective chans of giant hemoglobin from the polychaete Perinereis aibuhitensis." Biochim. Byophys. Acta. 1290. 215-223 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Yamaki: "Identufication of the subunit loci in the extracellular multisubunit hemoglobin from annelid Perinereis aibuhitensis." Arch. Biochem. Biophys.335. 23-31 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T. Suzuki: "Convergent evolution. The gene structure of Sulcuous 41 kDa myoglobin is homologous weth that of human indolamine dioxyginase." Biochim. Byophys. Acta. 1308. 41-48 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H. J. Yuasa: "Electrospray ionization mass spectrometric composition of the 400 kDa hemoglobin from the pogonophoran Oligobrchia mashikoi and the primary strycture of three major globin chains." Biochim. Byophys. Acta. 1296. 235-244 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A. Matuoka: "The dimer-monomer conversion of Cerithidea myoglobin coupled weth theiron oxidtion." Clmp. Buichem. Physiol.115B. 483-429 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Korenaga: "A myoglobin-like protein from Tetrahymena pyriformis : Isolation and characterization." Eur. J. Protistology. 32. 73-78 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Neya: "Phthaocyanines : Properties and Application" VCH Publishers, 524 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 四釜慶治: "新タンパク質応用工学" フジ・テクノシステム社, 950 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Imai: "Oxygen binding properties of Eudistylia vancouverii chlorocruorin and its dodecamer subunit" Comp.Biochem.Physiol.113B. 613-618 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Imai: "The hemoglobin as a blood pressure regulator (In Japanese)" Parity. 11. 45-47 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.-Y.Park: "High-resolution crystal structure of magnesium (MgII) -iron (FeII) hybrid hemoglobin with liganded beta subunits" J.Mol.Biol.255. 726-734 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Unzai: "Oxygen equilibrium properties of chromium (III) -iron (II) hybrid hemoglobins" J.Biol.Chem.271. 12451-12456 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Matsui: "Preparation and reaction of myoglobin mutants bearing both proximal cystein ligand and hydrophobic distal cavity" Biochemistry. 35. 13118-13124 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Uchida: "Effects of the intramolecular disulfide bond on ligand binding dynamics in myoglobin" Biochemistry. 36. 324-332 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Tamura: "Nature of endogenous ligand binding to heme iron in oxygen sensor FixL" J.Am.Chem.Soc.118. 9434-9435 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Neya: "Remarkable functional aspects of the myoglobin induced by diazaheme prosthetic group" Biochim.Biophys.Acta. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Hirota: "Observation of multiple CN-isotope-sensitive Raman bands for CN-adducts of hemoglobin, myoglobin, and cytochrome c oxidase : Evidence for vibrational coupling betweenthe Fe-C-N bending and porphyrin in-plain modes" J.Phys.Chem.100. 15274-15279 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Hirata: "Perturbation of the Fe-O_2 bond by near-by residues in heme pocket : Observation of nuFe-O_2 Raman bands for oxymyoglobin mutants" J.Am.Chem.Soc.118. 7845-7846 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Nagai: "Ultraviolet resonance Raman studies of hemoglobin quaternary structure using a tyrosine-alpha42 mutant : Changes in the alpha1beta2 subunit interface upon the T*R transition" J.Mol.Struc.379. 65-75 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Nagai: "Ultraviolet resonance Raman studies of quaternary structure of hemoglobin using a tryptophan beta37 mutant" J.Biol.Chem.270. 1636-1642 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Sunada: "Calculation of NMR order parameters in proteins by normal mode analysis" J.Chem.Phys.104. 4768-4775 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Sunada: "Calculation of NMR order parameters in proteins by normal mode analysis. 2 : Contribution from localized high frequence motions" J.Chem.Phys.105. 6560-6564 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwai: "Dose-response curve for anaesthetics based on the Monod-Wyman-Changeux model" Brit.J.Anaesthesia. 77. 517-521 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] G.V.Semisotnov: "Globulization during protein folding studied by synchrotron small-angle X-ray scattering" J.Mol.Biol.262. 559-574 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Neya: "Functional comparison of the myoglobins reconstituted with symmetric deuterohemes" Biochim.Biophys.Acta. 1296. 245-249 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Neya: "Dynamics of the heme within myoglobin (In Japanese)" Proteins, Nucleic acids and Enzymes. 40. 1115-1121 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Matsubara: "Wheat germ agglutinin-reactive chains of giant hemoglobin from the polychaete Perinereis aibuhitensis" Biochim.Biophys.Acta. 1290. 215-223 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Yamaki: "Identification of the subunit loci in the extracellular multisubunit hemoglobin from annelid Perinereis aibuhitensis" Arch.Biochem.Biophys.335. 23-31 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Suzuki: "Convergent evolution. The gene structure of Sulculus 41 kDa myoglobin is homologous with that of human indoleamine dioxygenase" Biochim.Biophys.Acta. 1308. 41-48 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.J.Yuasa: "Electrospray ionization mass spectrometric composition of the 400 kDa hemoglobin from the pogonophoran Oligobrachia kashikoi and the primary structure of three major globin chains" Biochim.Biophys.Acta. 1296. 235-244 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.Matsuoka: "The dimer-monomer conversion of Cerithidea myoglobin coupled with the heme iron oxidation" Comp.Biochem.Physiol.115B. 483-492 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Korenaga: "A myoglobin-like protein from Tetrahymena pyriformis : Isolation and characterization" Eur.J.Protistol.32. 73-78 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Kobayashi: "Singnificance of oxygen afinity of fetal and adult human hemoglobins" Zool.Sci.23. 661-664 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Neya: Phthaocyanines : Properties and Application. VCH Publishers, 524 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Shikama: New Applied Engineering of proteins (In Japanese). Fuji Technosystem, 950 (1996)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1999-03-09  

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