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2000 Fiscal Year Final Research Report Summary

Organic Orbital Theory-Discovery of New Concepts in Basic Organic Chemistry.

Research Project

Project/Area Number 09440215
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Organic chemistry
Research InstitutionThe University of Tokyo

Principal Investigator

TOMODA Shuji  Professor, Univ.of Tokyo, Graduate School of Arts & Sciences, 大学院・総合文化研究科, 教授 (30092282)

Co-Investigator(Kenkyū-buntansha) IWAOKA Michio  Instructor, Univ.of Tokyo, Graduate School of Arts & Sciences, 大学院・総合文化研究科, 助手 (30221097)
Project Period (FY) 1997 – 2000
Keywordsdiastereoselection / facial diastereoselection / frontier orbital theory / EFOE Model / weak interaction / life science / Proteins / Marcus theory
Research Abstract

The following three projects have been completed.
1. New Theoretical Model for the Prediction of π-Facial Diastereoselection.
Contrary to the claim of the conventional transition state models of π-facial diastereoselection (Felkin-Anh and Cieplak models), it is theoretically proven that the antiperiplanar effects involving the incipient bond in the transition state of nucleophilic carbonyl addition are not essential to dictate facial diastereoselection. Based on the Salem-Klopman equation and the frontier orbital theory, a new quantum chemical model for the prediction of π-facial diastereoselection has been proposed. This model, the exterior frontier orbital extension model (the EFOE Model) is found to be very effective for the prediction of facial diastereoselection of the hydride reduction of most cyclic ketones.
2. Quantitative Analysis of Weak Interaction in Organic Systems and Proteins.
Utilizing the specific property of selenium nuclear spin (1/2), the nature and the strength of weak … More interactions in hydrogen bonds involving Group 16 elements (X…H-Y (X=O, S, Se, Te and Y=O, C) ) and Se…Z (Z=N, O, F) non-bonded attractive interactions have been investigated. It is concluded that in all these cases the interactions are not electrostatic, but largely the donor-acceptor type orbital interaction. In a related project, we have detected and characterized new type of weak atomic interactions in proteins, such as C-S…O, S-S…O and C=O…S.These interactions are mainly the donor-acceptor type with strong bonding directionality.
3. Reinvestigation of the Problems in Basic Organic Chemistry
It is generally accepted that halobenzenes are deactivated because of e-withdrawing nature of halogens, in spite of the fact that fluorobenzene is more reactive than benzene in electrophilic substittution. Quantitative analysis of orbital interactions of the π-systems in halobenzenes, it is concluded that the reactivity of mono-substittuted benzenes are dependent on the energy level of the lowest occupied π-orbital (π1) and not of the frontier orbitals (π2 or π3). Halobenzenes (Cl, Br, I) are therefore deactivated because of their e-donating property. The problems of cis-effect and gaucheeffect have also been investigated by natural bond orbital (NBO) analysis. Less

  • Research Products

    (60 results)

All Other

All Publications (60 results)

  • [Publications] S.Tomoda,T.Senju: "Origin of π-Facial Stereoselectivity of Hydride Reduction of Cyclohexanones.A New Interpretation based on Quantitative Analysis of Exterior Frontier Orbital Exrension."Tetrahedron. 53. 9057-9066 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju: "Quantitative Analyses of Cieplak vs.Felkin-Anh Effects in Hydride Reduction of Cyclohexanone."Chem.Lett.. 431-432 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Fujita,K.Murata,M.Iwaoka,and S.Tomoda: "Design of Optically Active Selenium Reagents Having a Chiral Tertiary Amino Group and Their Application to Asymmetric Inter-and Intramolecular Oxyselenenylations."Tetrahedron. 53. 2029-2048 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yamamoto,S.Tomoda: "On the Origin of cis-Effect of 1,2-Difluoroethene."Chem.Lett.. 1069-1070 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Iwaoka,H.Komatsu,S.Tomoda: "Characterization of an Intramolecular Non-bonded Interaction between Sclenium and Fluorine in Solution"Chem.Lett.. 969-970 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,H.Takamatsu,M.Iwaoka: "Origin of Deactivation of Chlorobenzene in Aromatic Electrophilic Substitution."Chem.Lett.. 581-582 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Iwaoka,H.A.Scheraga: "Characterization of Multiple Reduction Pathways of Proteins in the Presence of a Denaturant."J.Am.Chem.Soc.. 120. 581-582 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Iwaoka,D.Juminaga,H.A.Scheraga: "Regeneration of Three-Disulfide Mutants of Bovine Pancreatic Ribonuclease A Missing the 65-72 Disulfide Bond.Characterization of a Minor Folding Pathway of Ribonuclease A and Kinetic Roles of Cys65 and Cys72."Biochemistry. 37. 4490-4501 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Iwaoka,W.J.Wedemeyer,H.A.Scheraga: "Conformational Unfolding Studies of Three-Disulfide Mutants of Bovine Pancreatic Ribonuclease A and the Coupling of Proline Isomerization to Disulfide Redox Reactions."Biochemistry. 38. 2805-2815 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju: "Natural Bond Orbital Analysis of Hyperconjugative Stabilization Effects in the Transition States of Cyclohexanone Reduction with Lithium Tetrahydridoaluminate"Chem.Comm.. 423-424 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju: "Origin of π-Facial Stereoselectivity of Nucleophilic Addition to Carbonyl Compounds.Application of the Exterior Frontier Orbital Extension Model to Cyclohexanones with Polar Substituent"Tetrahedron. 55. 3871-3882 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju: "Quantitative Evaluation of Steric Effect for π-Facial Stereoselection.π-Plane-Divided Accessible Space."Chem.Comm.. 621-622 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju: "Origin of π-Facial Stereoselection in Nucleophilic Additions of Adamantanones.A New Interpretation Based on the Exterior Frontier Orbital Extension Model"Tetrahedron. 55. 5303-5318 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju: "Origin of π-Facial Stereoselectivity in Nucleophilic Addition.Application of the Exterior Frontier Orbital Extension Model to Substituted Bicyclo[2.2.1]heptan-7-ones."Chem.Lett.. 353-354 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju,M.Kawamura,and T.Ikeda: "Origin of π-Facial Stereoselectivity in Nucleophilic Additions.Application of the Exterior Frontier Orbital Extension Model to Imines and Iminium Ions."J.Org.Chem.. 64. 5396-5400 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,T.Senju: "Origin of π-Facial Diastereoselection in Hydride Reduction of Piperidones.The Importance of Ground-State Effects."Chem.Lett.. 625-626 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,D.Kaneno,T.Senju: "Origin of π-Facial Stereoselection in Nucleophilic Additions to 1,3-Diheteran-5-ones (Heteroatom = O,S).Theoretical Evidence for the Importance of Ground-state Effects."Chem.Lett.. 1161-1162 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Komatsu,M.Iwaoka,S.Tomoda,: "Intramolecular Non-bonded Interaction between Selenium and Oxygen as Revealed by O-17 and Se-77 NMR Spectroscopy and Natural Bond Orbital Analysis."Chem.Commun.. 205-206 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Ikeno,J.Harada,S.Tomoda: "Structure and Natural Bond Orbital Analysis of Oxirancs Substituted with a Group 14 Element.A Comment on SN2 Reactivity."Chem.Lett.. 409-410 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,J.Zhang,D.Kaneno,M.Segi,J.Zhou,: "Reversal of π-Facial Diastereoselection in the Hydride Reduction of Selenanones.Further Application of the Exterior Frontier Orbital Extension Model."Tetrahedron Lett.. 41. 1435-1449 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda,D.Kaneno,T.Senju: "Origin of π-Facial Diastereoselection in Carbonyl addition.Application of the Exterior Frontier Orbital Extension Model to 1,3-Diheteran-5-ones (Heteroatom = O,S)."Heterocycles. 52. 1435-1449 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Iwaoka.M.,Komatsu,H.,Tomoda,S.: "Structural Characterization of Areneselenenyl Bromide and Areneselenenyl Chloride Stabilized by Hypervalent Coordination with a Halide Anion in the Solid State."J.Organometal.Chem.. 611. 164-171 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Iwaoka,S.Tomoda: "trans-3,4-Dihydroxy-1-Selenolane Oxide.A New Reagent for Rapid and Quantitative Formation of Disulfide Bonds in Polypeptides."Chem.Lett.. 1400-1401 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Iwaoka,S.Takemoto,M.Okada,S.Tomoda: "Statistical Characterization of Nonbonded S…O Interactions in Proteins."Chem.Lett.. 132-133 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Iwaoka,T.Takahashi,S.Tomoda: "Synthesis and Structural Characterization of Water-Soluble Selenium Reagents for the Redox Control of Protein Disulfide Bonds."Heteroatom Chem.. (印刷中). (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] D.Kaneno,M.Iwaoka,J.Zhang,S.Tomoda: "π-Facial Diastereoselection of Hydride Reduction of 1,3-Diheteran-5-ones.Application of the Exterior Frontier Orbital Extension Model."Heteroatom Chem.. (印刷中). (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Harada,H.Yoshida,K.Ohno,H.Matsuura,J.Zhang,M.Iwaoka,S.Tomoda: "Implications of Intramolecular OH…Se Hydrogen Bonding and CH…O Interaction in the Conformational Stabilization of 2-(Methylseleno) ethanol Studied by Vibrational Spectroscopy and Density Functional Theory."J.Phys.Chem.A. (印刷中). (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda: "The Exterior Frontier Orbital Extension Model."Chem.Rev.. 99. 1243-1263 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 友田修司,金野大助: "エクステリアフロンティア軌道広がりモデル-ジアステレオ面選択性予測のための試み."有機化学合成協会誌. 59. 219-231 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 岩岡道夫: "タンパク質表面に局在する特異なカチオン-π相互作用."化学. 55. 60-61 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Iwaoka,M.,Tomoda,S.: "Nucleophilic Selenium (Topics in Current Chemistry)"Wiley. 269 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Tomoda, T.Senju: "Origin of π-Facial Stereoselectivity of Hydride Reduction of Cyclohexanones. A New Interpretation based on Quantitative Analysis of Exterior Frontier Orbital Extension."Tetrahedron. 53. 9057-9066 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju: "Quantitative Analyses of Cieplak vs. Felkin-Anh Effects in Hydride Reduction of Cyclohexanone."Chem.Lett.. 1997. 431-432

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Fujita, K.Murata, M.Iwaoka, and S.Tomoda: "Design of Optically Active Selenium Reagents Having a Chiral Tertiary Amino Group and Their Application to Asymmetric Inter- and Intramolecular Oxyselenenylations."Tetrahedron. 53. 2029-2048 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Yamamoto, S.Tomoda: "On the Origin of cis-Effect of 1, 2-Difluoroethene."Chem.Lett.. 1997. 1069-1070

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Iwaoka, H.Komatsu, S.Tomoda: "Characterization of an Intramolecular Non-bonded Interaction between Selenium and Fluorine in Solution."Chem.Lett.. 1998. 969-970

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, H.Takamatsu, M.Iwaoka: "Origin of Deactivation of Chlorobenzene in Aromatic Electrophilic Substitution."Chem.Lett.. 1998. 581-582

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Iwaoka, H.A.Scheraga: "Characterization of Multiple Reduction Pathways of Proteins in the Presence of a Denaturant."J.Am.Chem.Soc.. 120. 5806-5807 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Iwaoka, D.Juminaga, H.A.Scheraga: "Regeneration of Three-Disulfide Mutants of Bovine Pancreatic Ribonuclease A Missing the 65-72 Disulfide Bond. Characterization of a Minor Folding Pathway of Ribonuclease A and Kinetic Roles of Cys65 and Cys72."Biochemistry. 37. 4490-4501 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Iwaoka, W.J.Wedemeyer, H.A.Scheraga: "Conformational Ulfolding Studies of Three-Disulfide Mutants of Bovine Pancreatic Ribonuclease A and the Coupling of Proline Isomerization to Disulfide Redox Reactions."Biochemistry. 38. 2805-2815 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju: "Origin of π-Facial Stereoselectivity of Nucleophilic Addition to Carbonyl Compounds. Application of the Exterior Frontier Orbital Extension Model to Cyclohexanones with Polar Substituent."Tetrahedron. 55. 3871-3882 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju: "Quantitative Evaluation of Steric Effect for π-Facial Stereoselection. π-Plane-Divided Accessible Space."Chem.Comm.. 1999. 621-622

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju: "Origin of π-Facial Stereoselection in Nucleophilic Additions of Adamantanones. A New Interpretation Based on the Exterior Frontier Orbital Extension Model."Tetrahedron. 55, 55. 5303-5318 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju: "Origin of π-Facial Stereoselectivity in Nucleophilic Addition. Application of the Exterior Frontier Orbital Extension Model to Substituted Bicyclo[2.2.1]heptan-7-one."Chem.Lett.. 1999. 353-354

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju, M.Kawamura, T.Ikeda: "Origin of π-Facial Stereoselectivity in Nucleophilic Additions. Application of the Exterior Frontier Orbital Extension Model to Imines and Iminium Ions."J.Org.Chem.. 64. 5396-5400 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju: "Origin of π-Facial Diastereoselection in Hydride Reduction of Piperidones. The Importance of Ground-State Effects."Chem.Lett.. 1999. 625-626

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, D.Kaneno, T.Senju: "Origin of π-Facial Stereoselection in Nucleophilic Additions to 1, 3-Diheteran-5-ones (Heteroatom=O, S). Theoretical Evidence for the Importance of Ground-state Effects."Chem.Lett.. 1999. 1161-1162

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Komatsu, M.Iwaoka, S.Tomoda: "Intramolecular Non-bonded Interaction between Selenium and Oxygen as Revealed by O-17 and Se-77 NMR Spectroscopy and Natural Bond Orbital Analysis."Chem.Commun.. 1999. 205-206

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Ikeno, J.Harada, S.Tomoda: "Structure and Natural Bond Orbital Analysis of Oxiranes Substituted with a Group 14 Element. A Comment on SN2 Reactivity."Chem.Lett.. 1999. 409-410

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, T.Senju: "Natural Bond Orbital Analysis of Hyperconjugative Stabilization Effects in the Transition States of Cyclohexanone Reduction with Lithium Tetrahydridoaluminate"Chem.Comm.. 1999. 423-424

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, J.Zhang, D.Kaneto, M.Segi, J.Zhou: "Reversal of π-Facial Diastereoselection in the Hydride Reduction of Selenanones. Further Application of the Exterior Frontier Orbital Extension Model."Tetrahedron Lett.. 41. 4597-4601 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda, D.Kaneno, T.Senju: "Origin of π-Facial Diastereoselection in Carbonyl addition. Application of the Exterior Frontier Orbital Extension Model to 1, 3-Diheteran-5-ones (Heteroatom=O, S)."Heterocycles. 52. 1435-1449 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Iwaoka, M., Komatsu, H., Tomoda, S.: "Structural Characterization of Areneselenenyl Bromide and Areneselenenyl Chloride Stabilized by Hypervalent Coordination with a Halide Anion in the Solid State."J.Organometal.Chem.. 611. 164-171 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Iwaoka, S.Tomoda: "trans-3, 4-Dihydroxy-1-Selenolane Oxide. A New Reagent for Rapid and Quantitative Formation of Disulfide Bonds in Polypeptides."Chem.Lett.. 2000. 1400-1401

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Iwaoka, S.Takemoto, M.Okada, S.Tomoda: "Statistical Characterization of Nonboned S…O Interactions in Proteins."Chem.Lett.. 2001. 132-133

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Iwaoka, T.Takahashi, S.Tomoda: "Synthesis and Structural Characterization of Water-Soluble Selenium Reagents for the Redox Control of Protein Disulfide Bonds."Heteroatom Chem.. (in press). (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] D.Kaneno, M.Iwaoka, J.Zhang, S.Tomoda: "π-Facial Diastereoselection of Hydride Reduction of 1, 3-Diheteran-5-ones. Application of the Exterior Frontier Orbital Extension Model."Heteroatom Chem.. (in press). (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Harada, H.Yoshida, K.Ohno, H.Matsuura, J.Zhang, M.Iwaoka, S.Tomoda: "Implications of Intramolecular OH…Se Hydrogen Bonding and CH…O Interaction in the Conformational Stabilization of 2-(Methylseleno) ethanol Studied by Vibrational Spectroscopy and Density Functional Theory."J.Phys.Chem.A. (in press). (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tomoda: "The Exterior Frontier Orbital Extension Model."Chem.Rev.. 99. 1243-1263 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Iwaoka, M., Tomoda, S.: "Nucleophilic Selenium."Topics in Current Chemistry. 208. 55-80 (2000)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2002-03-26  

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