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1999 Fiscal Year Final Research Report Summary

Development of high-resolution DNA typing methods for HLA class 1 genes.

Research Project

Project/Area Number 09557215
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Laboratory medicine
Research InstitutionUniversity of Tokyo

Principal Investigator

TOKUNAGA Katsushi  Graduate School of Medicine, University of Tokyo, Professor, 医学系研究科, 教授 (40163977)

Co-Investigator(Kenkyū-buntansha) YAMANE Akio  Institution for Medical Research, Wakunaga Pharmaceutical Co., Ltd., Associate Director, 創薬研究所, 副所長(研究職)
JUJI Takeo  Central Blood Center, The Japanese Red Cross, Director, 中央血液センター, 所長(研究職)
TSUCHIYA Naoyuki  Graduate School of Medicine, University of Tokyo, Associate Professor, 医学系研究科, 助教授 (60231437)
Project Period (FY) 1997 – 1999
KeywordsHLA class I / DNA typing method / HLA-A / HLA-B / HLA-C / Japanese
Research Abstract

1. Screening of variations at HLA-A, -B, and -C loci followed by nucleotide sequencing elucidated a number of new alleles including HLA-B22, -B27, -Cw2, and several non-expressed (null) alleles. Consequently, we could identify most, if not all, of the HLA class I alleles existing in the Japanese population.
2. DNA-based typing kits for HLA-A and -B loci at the intermediate resolution were established using the PCR-MPH method. Also, DNA-based typing kits for HLA-C locus as well as -A2, -A26, -B15, and -B40 groups at the sequence-level resolution were established using the PCR-MPH method. Thus, most of the HLA class I alleles in Japanese can be detected using these PCR-MPH kits. In addition, DNA-based typing methods for HLA-A and B loci at the sequence-level resolution, suitable for small number of samples, were established using the PCR-RFLP method.
3. Using the above methods, we performed sequence-level typing for HLA-A, B, and C loci in Japanese population samples, and reported allele and haplotype frequenecies. Moreover, we investigated the diversity of alleles and haplotypes of HLA-B61 and -B17 groups in East Asian populations.

  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Sobao Y, et al.: "Overlaping peptide-binding specifities of HLA-B27 and B39"Arthritis and Rheumatizm. 42.1. 175-181 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Furukawa H, et al.: "Splice acceptor site mutation of the TAP1 gene in HLA class I deficiency."The Journal of Clinical Investigation. 103.5. 649-652 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Inoue T, et al.: "Diversity of HLA-B17 alleles and haplotypes in East Asians and a novel Cw6 allele (Cw*0604) associated with B*5701."Tissue Antigens. 53.6. 534-544 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Komatsu-Wakui M, et al.: "MIC-A polymorphism in Japanese and a MIC-A-MIC-B null haplotype."Immunogenetics. 49. 7/8. 620-628 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Chida S, et al.: "Molecular analyses of the possible RNA-binding protein gene located in the human leukocyte antigen (HLA)-DR subregion."Genes and Development. 240. 125-132 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 前田平生、et al.: "HLA-DNAタイピングと日本人のHLA."移植. 34・2. 55-64 (1999)

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      「研究成果報告書概要(和文)」より
  • [Publications] Wang H, Tokunaga K. Akaza T, Tadokoro K, Shibata Y, and Juji T: "Identification of HLA-C alleles using PCR-single-strand-conformation polymorphism and direct sequencing."Tissue Antigens. 49. 134-140 (1997)

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      「研究成果報告書概要(欧文)」より
  • [Publications] Wang H, Tokunaga K, Akaza T, Tadokoro K, Shibata Y, and Juji T: "A novel allele, Cw*1702 with serological Cw2 specificity"Tissue Antigens. 49. 183-185 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Bannai M, Tokunaga K, Tanaka H, Lin L, Kashiwase K, Tokunaga K, and Juji T: "Five HLA-B22 group alleles in Japanese"Tissue Antigen. 49. 376-382 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Chimge N-O, Kashiwase K, Tanaka H, Ayush D, Tokunaga k, Saji H, Akaza T, Batsuuri J, and Juji T: "The HLA system m the Mongolian population."Tissue Antigen. 49. 477-483 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hasegawa T, Ogawa A, Sugahara Y, Moriyama Y, Nanzai H, Tawara K, Tokunaga K, Juji T, and Kondo S: "Novel HLA-B27 allele (B*2711) encoding an antigen reacting with both B27 and B40 specific antisera."Tissue Antigens. 49. 649-652 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamashita T, Fujii T, Tokunaga K, Tadokoro K, Juji T, Taketani Y: "Correction of the HLA-G*01012 genomic sequence."Tissue Antigen. 449. 673-674 (1997)

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      「研究成果報告書概要(欧文)」より
  • [Publications] Nagao F, Yabe T, Lin L, Tokunaga K, Juji T, and Okumura K: "Japanese population does not manifest significant association between low NK activity and HLA-B(C) locus homozygosity."Hum. Immunol. 53. 17-22 (1997)

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      「研究成果報告書概要(欧文)」より
  • [Publications] Watanabe Y, Tokunaga K, Geraghty DE, Tadokoro K, and Juji T: "Large scale comparative mapping of MHC class I region of predominant haplotypes in Japanese."Immunogenet. 46. 135-141 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tokunaga K, Ishikawa Y, Ogawa A, Wang H, Mitsunaga S, Moriyama S. Lin L, Bannai M, Watanabe Y, Kashiwase K, Tanaka H, Akaza T, Tadokoro K, and Juji T: "Sequence-based association analysis of HLA class I and II alleles in Japanese supports conservation of common haplotypes."Immunogenet. 46. 199-205 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Mine H, Ishikawa Y, Hojo M, Imashuku S, Tokunaga K, Juji T, Saji H, and Yokoyama S: "HLA-B null allele with a stop codon in generated by a one-point mutation."Tissue Antigens. 50. 351-354 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wang H, Tokunaga K, Ishikawa Y, Tanaka H, Akaza T, Tadokoro K, Shibata Y, and Juji T: "A high resolution genotyping method for HLA-C alleles and possible shared HLA-C-B haplotypes between Japanese and Caucasians."Tissue Antigens. 50. 619-625 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kashiwase K, Chimge N-O, Kawaga Y, Fujii M, Tanaka H, Tokunaga K, Akaza T, Batsuuri J, Juji T: "A new HLA-DR14 allele, DRB1*1427 identified in Mongolian population"Tissue Antigens. 50. 682-684 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tsuchiya N, Shiota M, Moriyama S, Ogawa A, Komatsu-Wakui M, Mitsui H, Geraghty ED, and Tokunaga K: "MICA allele typing of HLA-B27 positive Japanese patients with seronegative spondylarthropathies and healthy individuals : Differential linkage disequilibrium with HLA-B27 subtypes"Arthritis Rheum. 41. 68-73 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Park MH. Hwang YS, Park KS. Tokunaga K, Akaza T, Juji T, and Kim SI: "Distribution of HLA haplotypes in Koreans based on 107 families"Tissue Antigen. 51. 347-355 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ogawa A, Tokunaga K, Lin L, Kashiwase K, Tanaka H, Herrero MJ, Vilches C, Park MH, Jia GJ, Chimge N-O, Sideltseva EW, Ishikawa Y, Akaza T, Tadokoro K, and Juji T: "Diversity of HLA-B61 alleles and haplotypes in East Asians and Spanish Gypsies"Tissue Antigens. 51. 356-366 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Mitsunaga S, Tokunaga K, Kashiwase K, Akaza T, Tadokoro K, and Juji T: "A nested PCR-RELP method for high-resolution typing of HLA-A alleles"Eur. J. Immunogenet. 25. 15-27 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wang H, Nakajima F, Tokunaga K, Kashiwase K, Ishikawa Y, and Juji T: "Cw*0103, a new allele encoding for a novel HLA-Cw1 split in the Japaneses population."Tissue Antigens. 51. 571-573 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sobao Y, Tsuchiya N, Takiguchi M, and Tokunaga K: "Overlapping peptide-binding specifies of HLA-B27 and B39"Arthritis Rheum. 42(1). 175-181 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Furukawa H, Yabe T, Akaza T, Tadokoro K, Tohma S, Inoue T, Tokunaga K, Yamamoto K, Geraghty D, and Juji T: "Cell surface expression of HLA-E molecules on PBMC from a TAP1-deficient patient."Tissue Antigens. 53(3). 292-295 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Furukawa H, Murata S, Yabe T, Shimbara N, Keicho N, Kashiwase K, Watanabe K, Ishikawa Y, Akaza T, Tadokoro K, Tohma S, Inoue T, Tokunaga K, Yamamoto K, Tahaka K, and Juji T: "Splice acceptor site mutation of the TAPI gene in HLA class 1 deficiency."J. Clin. Invest.. 103(5). 649-652 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inoue T, Ogawa A, Tokunaga K, Ishikawa Y, Kashiwase K, Tanaka H, Park MH, Jia GJ Chimge N-O, Sideltseva E, Akaiza T, Tadokoro K, Takahashi, T, and Juji T: "Diversity of HLA-B17 alleles and haplotypes in East Asians and a hovel Cw6 allele (Cw*0604) associated with B*5701"Tissue Antigens. 53(6). 534-544 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Komatsu-Wakui M, Tokunaga K, Ishikawa Y, Kashiwase K, Moriyama S, Tsuchiya N, Ando H, Shiina T, Geraghty DE, Inoko H, and Juji T: "MIC-A polymorphism in Japanese and a MIC-A-MIC-B null haplotype"Immunogenet. 49(7/8). 620-628 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hatta Y, Ohashi J, Imanishi T, Kamiyama H, Iha M, Shimabukuro T, Ogawa A, Tanaka H, Akaza T, Gojobori T, Juji T, and Tokunaga K: "HLA genes and haplotypes in Ryukyuan suggest a recent gene flow to the Okinawa islands"Hum. Biol.. 71(3). 353-365 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamashita T, Fujii T, Tokunaga K, Tadokoro K, Hamai Y, Miki A, Kozuma S, Juji T, and Taketani Y: "Analysis of Human leukocyte Antigen-G polymorphism including Intron 4 in Japanese couples with habitual abortion"Am. J. Reprod. Immunol.. 41. 159-163 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Chida S, Hohjoh H, and Tokunaga K: "Molecular analyses of the possible RNA-binding protein gene located in the human leukocyte antigen (HLA)-DR subregion."Gene. 240. 125-132 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Lin M, Chu CC, Lee HL, Chang SL, Ohashi J, Tokunaga K, Akaza T, and Juji T: "Heterogeneity of Taiwan's indigenous population: possible relation to prehistoric Mongoloid dispersals"Tissue Antigens. 55(1). 1-9 (2000)

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      「研究成果報告書概要(欧文)」より

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Published: 2001-10-23  

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