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1999 Fiscal Year Final Research Report Summary

Development of systematic approach in determining three-dimensional structure of membrane bound biomolecules based on accurate interatomic distances

Research Project

Project/Area Number 09558094
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Biophysics
Research InstitutionHimeji Institute of Technology

Principal Investigator

NAITO Akira  Department of Life Science, Associate Professor, 理学部, 助教授 (80172245)

Co-Investigator(Kenkyū-buntansha) AIDA Misako  Hiroshima University, Faculty of Science, Professor, 理学部, 教授 (90175159)
TUZI Satoru  Department of Life Science, Assistant Professor, 理学部, 助手 (60227387)
SAITO Hazime  Department of Life Science, Professor, 理学部, 教授 (30100150)
FUJITO Teroaki  JEOL Ltd., Department of AI Technology, Section Chief, AI技術部, 課長
Project Period (FY) 1997 – 1999
KeywordsInteratomic distance / Dipolar interaction / Three-dimensional structure / REDOR / Molecular dynamics / Membrane bound biomolecule / Isotope labeling / Molecular packing
Research Abstract

In this research project, we have studied to establish systematic approach in determining the three-dimensional structure of membrane bound biomolecules based on accurate interatomic distances obtained from solid state NMR. Following results were obtained in this research project.
(1) The three-dimensional structure of [ィイD113ィエD1C, ィイD115ィエD1N]-labeled Leu-enkephalin (tyr-Gly-Gly-Phe-Leu) dihydrate crystals was determined on the basis of six sets of accurately determined ィイD113ィエD1C-ィイD115ィエD1N interatomic distances by rotational echo double resonance (REDOR) and some additional constraints from ィイD113ィエD1C chemical shifts.
(2) The phenyl ring dynamics of [ィイD12ィエD1HィイD25ィエD2]PheィイD14ィエD1-labeled LeuィイD15ィエD1- and MetィイD15ィエD1-enkephalin molecules in crystals grown from four solvents were examined using solid state ィイD12ィエD1H NMR spectroscopy. ィイD12ィエD1H NMR powder pattern clearly indicated the presence of 180°flip motions about the Cβ-Cγbond axis of the phenyl rings. The difference of … More the frequencies for the motion was attributed to the manner of their molecular packing in the crystal.
(3) Conformational transition of human calcitonin (hCT) during fibril formation in the acidic and neutral condition were investigated by high resolution solid state ィイD113ィエD1C NMR spectroscopy. The results indicate that conformational transitions from α-helix to β-sheet, and from random coil to β-sheet forms occurred in the central and C-terminus regions, respectively, during fibril formation.
(4) The conformation and dynamics of melittin bound to the dimyristoylphophatidylcholin (DMPC) bilayer and the magnetic orientation in the lipid bilayer systems were investigated by solid-state ィイD131ィエD1P and ィイD113ィエD1C NMR spectroscopy. Using ィイD131ィエD1P NMR, it was found that melittin-DMPC bilayer system forms magnetically oriented elongated vesicles with the long axis parallel to the magnetic field above the liquid crystalline-gel phase transition temperature. ィイD113ィエD1C NMR spectra were observed on the ィイD113ィエD1C labeled melittin bound to the lipid bilayer. Finally, it was found that melittin adopts a transmembrane α-helix whose average axis is parallel to the bilayers normal. Less

  • Research Products

    (48 results)

All Other

All Publications (48 results)

  • [Publications] A. Gil: "A^<13>CNMR Study on the Conformation and Dynamical Properities of a Cereal Strorage Protein. C-Hordein, and Its Model Peptides"Biopolymers. 41. 289-300 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Nakatsuji: "Pepartion and properities of 2-(o-halophenyl)a-nitonyl nitroxides"Mol. Cryst. Liq. Cryst.. 306. 279-284 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Yamaguchi: "Stability of C-Terminal -Helical Comain of Bacteriorhodopsin Protruding from the Membrane surface as Studied by High-resoluton Solid-state ^<13>CNMR"J. Biochem. (Tokyo). 123. 78-86 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H. saito: "Conformation and Dynamics of Membrane Proteins and Biologically Active Peptides as Studied by High-resolution Solid-state^<13>CNMR"J. Mol. Structure. 441. 137-148 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A. Naito: "Backbone Cynamics of Polycrystalline Peptides Studied by Measurements of ^<15>NNMR Lineshpes and ^<15>CTransverse Relaxation Times"J. Mol. Structure. 441. 231-242 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A. K. Dioumaev: "Existence of a Proton Transfer Chain in Bacteriorhodopsin : Participation of Glu-194 in the Release of Protons to the Extracellular Surface"Biochemistry. 37. 2496-2506 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Kamihira: "A High-resolution Solid-sate ^<13>C and ^<15>N NMR Study on Crystalline Leu- and Met-enkephalins : Distinction of Polymorphs, Backbone Dynamics and Local Conformational Rearrangements Induced by Dehydration or Freezing Motions of Bound Solvent Molecules"J. Phys. Chem. B. 102. 2826-2834 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H. Saito: "Empirical versus Nonempirical Evaluation of Secondary Structure of Fibrous and Membrane Proteins by Solid-state NMR : A Practical Approach"Annn. Rep. NMR Spectrosc.. 36. 79-121 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A. Naito: "Dipolar Interaction and Interatomic Distances"Physical and Theoretical Chemistry. 84. 22-49 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H. Saito: "Polysaccharides and Biological Systems"Physical and Theoretical Chemistry. 84. 891-921 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T. Iwasa: "^<19>F-NMR and UV-Vis Absorption Spectroscopic Studies of Fluorinated Octopus Rhodopsin and Its Photoproducts"J. Phys. Chem. A. 102. 5602-5610 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Nakatsuji: "2-(2'-Halophenyl)-a-nitronyl nitroxides"New. J. Chem.. 275-280 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K. Nishimura: "Determination of the Three-Dimensional Structure of Crystalline Leu-Enkephalin Dihydrate Based on Accurately Determined Six Sets of InteratomicDistances from ^<13>C-REDOR NMR and the Conformation-Dependent ^<13>C Chemical Shifts"J. Phys. chem. B.. 102. 7476-7483 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Tanio: "Evidence of Local Conformational Fluctuations and Changes in Bacteriorhodopsin. Dependent of Lipids. Detergents and Trimeric Structure. as studied by ^<13>CNMR"Biochim. Biophys. Acta. 1375. 84-92 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Tuzi: "Lodation of a cation-binding site in the loop between helices F and G of bacteriorhodopsin as studied by ^<13>CNMR"Biophys. J.. 76. 1523-1531 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Kamihira: "Phenyl ring dynamics of enkephalin molecules and behavior of bound solvents in the crystalline states by ^2HNMR spectroscopy"J. Phys. Chem. B.. 103. 3356-3363 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Tanio: "Long-distance effects of site-directed mutations on backbone conformation in bacteriorhodopsin from solid state NMR of [1-^<13>c]Val-labeled proteins"Biophys. J.. 77. 431-442 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Tanio: "Conformational changes of bacteriorhodopsin along the proton-conduction chain as studied with ^<13>CNMR of [3-^<13>C]Ala-labeled protein : Arg^<82>may function as an information mediator"Biophys. J.. 77. 1577-1584 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K. Nishimura: "Analysis of dipolar dephasing pattern in I-S_a multispin system for obtaining the information of molecular packing and its application to crystalline N-acetyl-Pro-Gly-Phe by REDOR solid state NMR"J. Phys. Chem. B.. 77. 431-442 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A. Naito: "Conformation and dynamics of melittin bound to magnetically oriented lipid bilayers by solid-state ^<31>P and ^<13>CNMR spectroscopy"Biophys. J.. (in press). (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M. Kamihira: "Conformational transitions and fibrillation mechanism of human calcitonin as studied by high resolution solid state ^<13>C NMR"Protein science. (in press). (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H. Saito: "Conformation and Baclbone Dynamics of Bacteriorhodopsin Reveald by ^<13>C NMR"Biochim. Biophys. Acta. (in press). (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Yamaguchi: "Irreversible Conformational Change of Bacterio-opsin Induced by Binding of the Retinal in In vitro Folding to Bacteriorhodopsin, as Studied by ^<13>C NMR"J. Biochem. (Tokyo). (in press). (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S. Kimura: "A ^<13>C NMR Study on[3-^<13>C]-, [1-^<13>C]Ala or [1-^<13>C]Val-labeled Transmembrane Peptides of Bacteriorhodopsin in Lipid Bilayers : Insertion, Rigid-body Motions and Local Conformational Fuluctuations at Ambient Temperature"Biopolymers. (in press). (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Gil: "A ィイD113ィエD1C NMR Study on the Conformation and Dynamical Properties of a Cereal Strorage Protein, C-Hordein, and Its Model Peptides"Biopolymers. 41. 289-300 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Nakatsuji: "Preparation and properties of 2-(o-halophenyl)-a-nitonyl nitroxides"Mol.Cryst.Liq.Cryst.. 306. 279-284 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Yamaguchi: "Stability of C-Terminal -Helical Domain of Bacteriorhodopsin Protruding from the Membrane Surface as Studied by High-resolution Solid-state ィイD113ィエD1C NMR"J.Biochem.(Tokyo). 123. 78-86 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Saito: "Conformation and Dynamics of Membrane Proteins and Biologically Active Peptides as Studied by High-resolution Solid-state ィイD113ィエD1C NMR"J.Mol.Structure. 441. 137-148 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.Nito: "Backbone Dynamics of Polycrystalline Peptides Studied by Measurements of ィイD115ィエD1N NMR Lineshpes and ィイD113ィエD1C Transverse Relaxation Times"J.Mol.Structure. 441. 231-242 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.K.Dioumaev: "Existence of a Proton Transfer Chain in Backeriorhodopsin : Participation of Glu-194 in the Release of Protons to the Extracellular Surface"Biochemistry. 37. 2496-2506 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Kamihira: "A High-resolution Solid-state ィイD113ィエD1C and ィイD115ィエD1N NMR Study on Crystalline Leu- and Met-enkephalins : Distinction of Polymorphs, Backbone Dynamics and Local Conformational Rearrangements Induced by Dehydration or Freezing Motions of Bound Solvent Molecules"J.Phys.Chem.B.. 102. 2826-2834 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Saito: "Empirical versus Nonempirical Evaluation of Secondary Structure of Fibrous and Membrane Proteins by Solid-state NMR : A Practical Approach"Annu.Rep.NMR Spectosc.. 36. 79-121 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.Naito: "Dipolar Interaction and Interatomic Distances"Physical and Theoretical Chemistry. 84. 22-49 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Saito: "Polysaccharides and Biological Systems"Physical and Theoretical Chemistry. 84. 891-921 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwase: "ィイD119ィエD1F-NMR and UV-Vis Absorption Spectroscopic Studies of Fluorinated Octopus Rhodopsin and Its Photoproducts"J.Phys.Chem.A.. 102. 5602-5610 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Nakatsuji: "2-(2'-Halophenly)-a-nitronyl nitroxides"New J.Chem.. 275-280 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Nishimura: "Determination of the Three-Dimensional Structure of Crystalline Leu-Enkephalin Dihydrate Based on Accurately Determined Six Sets of Interatomic Distances from ィイD113ィエD1C-REDOR NMR and the Conformation-Dependent ィイD113ィエD1C Chemical Shifts"J.Phys.Chem.B.. 102. 7476-7483 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Tanio: "Evidence of Local Conformational Fluctuations and Changes in Bacteriorhodopsin, Dependent on Lipids, Detergents and Trimeric Structure, as Studied by ィイD113ィエD1C NMR"Biochim.Biophys.Acta. 1375. 84-92 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Tuzi: "Location of a cation-binding site in the loop between helices F and G of bacteriorhodopsin as studies by ィイD113ィエD1C NMR"Biophys.J.. 76. 1523-1531 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Kamihara: "Phenyl ring dynamics of enkephalin molecules and behavior of bound solvents in the crystalline states by ィイD12ィエD1H NMR spectroscopy"J.Phys.Cehm.B.. 103. 3356-3363 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Tanio: "Long-distance effects of site-directed mutations on backbone conformation in bacteriorhodopsin from solid state NMR of [1-ィイD113ィエD1C] Val-labeled proteins"Biophys.J.. 77. 431-442 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Tanio: "Conformational changes of bacteriorhodopsin along the proton-conduction chain as studied with ィイD113ィエD1C NMR of 〔3-ィイD113ィエD1C〕Ala-labeled protein : ArgィイD182ィエD1 may function as an information mediator"Biophys.J.. 77. 1577-1584 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N.Nishimura: "Analysis of dipolar dephasing pattern in I-SィイD2nィエD2 multispin system for obtaining the information of molecular packing and its application to crystalline N-acetyl-Pro-Gly-Phe by REDOR solid state NMR"J.Phys.Chem.B.. 77. 431-442 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.Naito: "Conformation and dynamics of melittin bound to magnetically oriented lipid bilayers by solid-state ィイD131ィエD1P and ィイD113ィエD1C NMR spectroscopy"Biophys.J.. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Kmihira: "Conformational transitions and fibrillation mechanism of human calcitonin as studied by high resolution solid state ィイD113ィエD1C NMR"Protein Science. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Saito: "Conformation and Backbone Dynamics of Bacteriorhodopsin Revealed by ィイD113ィエD1C NMR"Biochim.Biophys.Acta. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Yamaguchi: "Irreversible Conformational Change of Bacterio-opsin Induced by Binding of the Retinal in the In vitro Folding to Bacteriorhodopsin, as Studied by ィイD113ィエD1C NMR"J.Biochem.(Tokyo). (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Kimura: "A ィイD113ィエD1C NMR Study on [3-ィイD113ィエD1C]-, [1-ィイD113ィエD1C] Ala or [1-ィイD113ィエD1C] Val-labeled Transmembrane Peptides of Bacteriorhodopsin in Lipid Bilayers : Insertion, Rigid-body Motions and Local Conformational Fluctuations at Ambient Temperature"Biopolymers. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2001-10-23  

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