• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2003 Fiscal Year Final Research Report Summary

Novel developments on genetic recombination : DNA double-strand break and DNA end-joining

Research Project

Project/Area Number 10216101
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo (1998, 2002-2003)
Kitasato Institute (1999-2001)

Principal Investigator

OHTSUBO Eichi  The University of Tokyo, Institute of Molecular and Celular Biosciences, Professor, 分子細胞生物学研究所, 教授 (10158800)

Co-Investigator(Kenkyū-buntansha) KOGA Akiniko  Nagoya University, Graduate School of Science, Associate Professor, 大学院・理学研究科, 助教授 (80192574)
IIDA Shigeru  IIDA,Shigeru, 基礎生物学研究所, 教授 (30012777)
IKEDA Hideo  Medinet Inc., Institute of Molecular Genetics, Director, 分子遺伝学研究所, 所長(研究職)
OGAWA Hideyuki  Iwale College of Nursing, Professor, 学長(研究職) (70028207)
SKIGUCHI Mutsuo  SKIGUCHI,Mutsuo, 生物分子工学研究所, 所長(研究職)
Project Period (FY) 1998 – 2002
KeywordsIllegitimate recombination / DNA end-Joining / Mobile genetic elements / Transposon / Transposition / Shaffron / Gene homing / Bloom syndrome
Research Abstract

Exchange of genetic materials has widely occurred in all organisms. This implies that genetic recombination has important roles for maintaining as well as evolving organisms. Genetic recombination is often caused by DNA double-strand breaks, which is usually induced by secondary structure and/or lesions of DNA. Transposases or other related endonucleases, which are coded by transposons or other genetic elements, are also involved in the transposition, integrative recombination, inversion, or homing. DNA double-strand breaks followed by DNA end-joining must therefore play a central role in various biological processes. Some of recombination functions are also related to genetic diseases such as Ataxia telangiectasia and Bloom syndrome. Therefore the studies on DNA double-strand breaks and DNA end-joining provide clues for understanding of the mechanisms of various biological functions, as well as elucidating the causes of genetic diseases. Considering these problems, a research group that csists of ten members and several support members was organized in April 1998 for a five-years project, focusing on several important aspects of recombination : DNA rearrangements mediated by double-strand breaks and end-joining, regulation of DNA rearrangements and its relation with genetic diseases, transposition of transposons, site-specific recombination, and gene homing. All the members have carried out the project through extensive discussion and collaboration. All the members have been very productive and made many significant publications in the international journals. Also, a book has been published as an issue in "Advances in Biophysics' from Japan Scientific Societies Press/Elsevier. This issue is composed of selected papers describing the most interesting results obtained by all the members in the project and thus represents the current advances in the field of genetic recombination in Japan.

  • Research Products

    (38 results)

All Other

All Publications (38 results)

  • [Publications] Makino, K., Ishii, K., Yasunaga, T., Hattori, M., Yokoyama, K., Yutsudo, C., Kubota, Y., Yamaichi, Y., Iida, T., Yamamoto, K., Honda, T., Han, C.-G., Ohtsubo, E., Kasamatsu, M., Hayashi, T., Kuhara, S., Shinagawa, H.: "Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an Enterohemorrhagic Eschenchia coli O157 : H7 derived from Sakai outbreak."DNA Res.. 5. 1-9 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sekine, Y., Aihara, K., Ohtsubo, E.: "Linearization and transposition of IS3 circles"J.Mol.Biol.. 294. 21-34 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shiga, Y., Sekine, Y., Ohtsubo.E.: "Transposition of IS1 circles"Genes Cells. 4. 551-559 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tobe T., Hayashi, T., Han, C.-G., Schoolnik, G.K., Ohtsubo, E., Sasakawa, C.: "Complete DNA sequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid"Infect.Immun.. 67. 5455-5462 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Han, C.-G., Frank, M.J., Ohisubo, H., Ohtsubo, E.: "New transposable elements identified as insertions in rice transposon Tnr1"Genes Genet.Syst.. 75. 69-77 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Cheng, C., Tsuchimoto, S., Ohtsubo, H., Ohtsubo, E.: "Tnr8, a foldback transposable element from rice"Genes Genet.Syst.. 75. 327-333 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shiga, Y., Sekine, Y., Kano, Y., Ohtsubo, E.: "The involvement of H-NS in transpositional recombination mediated by IS1"J.Bacteriol.. 183. 2476-2484 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Han, C.-G., Shiga Y., Tobe T., Sasakawa, C., Ohtsubo, E.: "Structural and functional characterization of IS679 and IS66-family elements."J.Bacteriol.. 183. 4296-4304 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishli, K., Yokoyama, K., Han, C.-G., Ohtsubo, E., Nakayama, K., Murata, T., Tanaka, M., Tobe, T., Iida, T., Takami, H., Honda, T., Sasakawa, C., Ogasawara, N., Yasunaga, T., Kuhara, S., Shiba, T., Hattori, M., Shinagawa, H.: "Genome sequence and comparative analysis of enterohemorrhagic E.coli O157 : H7"DNA Res.. 8. 11-22 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., Han, C.-G., Ohtsubo, E., Nakayama, K., Murata, T., Tanaka, M., Tobe T., Iida, T., Takami, H., Honda, T., Sasakawa, C., Ogasawara, N., Yasunaga T., Kuhara, S., Shiba, T., Hattori, M., Shinagawa, H.: "Genome sequence and comparative analysis of enterohemorrhagic E.coli O157 : H7 (Supplement)"DNA Res.. 8. 47-52 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takami, H., Han, C.-G., Takaki, Y., Ohtsubo, E.: "Identification ad distribution of new insertion sequences in the genome of Alkaliphilic Bacillus halodurans C-125"J.Bacteriol.. 183. 4345-4356 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ohta, S., Tsuchida, K., S.Choi, Sekine, Y., Shiga, Y., Ohtsubo, E.: "Presence of a characteristic D-D-E motif in IS1 transposase"J.Bacteriol.. 184. 6146-6154 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Murata, T, Ohnishi, M, Ara, T., Kaneko, J., Han, C.-G., Lee, Y.-F., Takashima, K., Nojima, H., Nakayama, K, Kaji, A., Kamio, Y., Miki, T., Mori, H., Ohtsubo, E., Terawaki, Y., Hayashi, T.: "Complete nucleotide sequence of plasmid Rts1 : implication for the evolution of large plasmid"J.Bacteriol.. 184. 3194-3202 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Urasaki, A., Sekine, Y, Ohtsubo, E.: "Transposition of cyanobacterium insertion element ISY100 in Escherichia coil"J.Bacteriol.. 184. 5104-5112 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Chol, S., Shinya Ohta, Ohtsubo, E.: "A novel IS element, IS621, of the IS110/IS492 family transposes to a specific site in repetitive extragenic palindromic sequences in Escherichia coli"J.Bacteriol.. 185. 4891-4900 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kato, N., Yamazoe, K., Han, C.-G., Ohtsubo, E.: "New insertion sequence elements in the upstream region of cfiA in imipenem-resistant Bacteroides fragills strains"Antimicrob.Agents Chemother.. 47. 979-985 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ohtsubo, E., Minematsu, H., Tsuchida, K., Ohtsubo, H., Sekine, Y: "Intermediate molecules generated by transposase in the pathways of transposition of bacterial insertion element IS3"Adv.Biophys.. 38(in press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ohta, S., Yoshimura, E., Ohtsubo, E.: "Involvement of two domains with helix-turn-helix and zinc finger motifs in the binding of IS1 transposase to terminal inverted repeats"Mol.Microbiol.. 52(in press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ikeda, H., Iida, S., Ohtsubo, E.(Eds): "Novel developments on genetic recombination : DNA double-strand break and DNA end-joining"Japan Scientific Societies Press/Elsevier Advances in Bionhvsics, Vol.38. 234 (2004)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Makino, K., Ishii, K., Yasunaga, T., Hattori, M., Yokoyama, K., Yutsudo, C., Kubota, Y., Yamaichi, Y., Iida, T., Yamamoto, K., Honda, T., Han, C.-G., Ohtsubo, E., Kasamatsu, M., Hayashi, T., Kuhara, S., Shinagawa, H.: "Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an Enterohemorrhagic Escherichia coli O157 : H7 derived from Sakai outbreak."DNA Res.. 5. 1-9 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sekine, Y., Aihara, K., Ohtsubo, E.: "Linearization and transposition of IS3 circles."J. Mol. Biol.. 294. 21-34 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shiga, Y., Sekine, Y., Ohtsubo, E.: "Transposition of IS1 circles."Genes Cells. 4. 551-559 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tobe, T., Hayashi, T., Han, C.-G., Schoolnik, G.K., Ohtsubo, E., Sasakawa, C.: "Complete DNA sequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid."Infect. Immun.. 67. 5455-5462 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Han, G.-G., Frank, M.J., Ohtsubo, H., Ohtsubo, E.: "New transposable elements identified as insertions in rice transposon Tnr1."Genes Genet. Syst.. 75. 69-77 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Cheng, C., Tsuchimoto, S., Ohtsubo, H., Ohtsubo, E.: "Tnr8, a foldback transposable element from rice."Genes Genet. Syst.. 75. 327-333 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shiga, Y., Sekine, Y., Kano, Y., Ohtsubo, E.: "The involvement of H-NS in transpositional recombination mediated by IS1."J. Bacteriol.. 183. 2476-2484 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Han.C.-G., Shiga, Y., Tobe, T., Sasakawa, C., Ohtsubo, E.: "Structural and functional characterization of IS679 and IS66-family elements."J. Bacteriol.. 183. 4296-4304 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., Han, C.-G., Ohtsubo, E., Nakayama, K., Murata, T., Tanaka, M., Tobe, T., Iida, T., Takami, H., Honda, T., Sasakawa, C., Ogasawara, N., Yasunaga, T., Kuhara, S., Shiba, T., Hattori, M., Shinagawa, H.: "Genome sequence and comparative analysis of enterohemorrhagic E. coli O157 : H7"DNA Res.. 8. 11-22 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., Han, C.-G., Ohtsubo, E., Nakayam, K., Murata, T., Tanaka, M., Tobe, T., Iida, T., Takami, H., Honda, T., Sasakawa, C., Ogasawara, N., Yasunaga, T., Kuhara, S., Shiba, T., Hattori, M., Shinagawa, H.: "Genome sequence and comparative analysis of enterohemorrhagic E. coli O157 : H7 (Supplement)."DNA Res.. 8. 47-52 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takami, H., Han, C.-G., Takaki, Y., Ohtsubo, E.: "Identification and distribution of new insertion sequences in the genome of Alkaliphilic Bacillus halodurans C-125."J. Bacteriol.. 183. 4345-4356 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ohta, S., Tsuchida, K., S.Choi, Sekine, Y., Ohtsubo, E.: "Presence of a characteristic D-D-E motif in IS1 transposase."J. Bacteriol.. 184. 6146-6154 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Murata, T., Ohnishi, M., Ara, T., Kaneko, J., Han, C.-G., Lee, Y.-F., takashima, K., Nojima, H., Nakayama, K, kaji, A., Kamio, Y., Miki, T., Mori, H., Ohtsubo, E., Terawaki, Y., Hayashi, T.: "Complete nucleotide sequence of plasmid Rts1 : implication for the evolution of large plasmid."J. Bacteriol.. 184. 3194-3202 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Choi, S., Ohta, S., Ohtsubo, E.: "Anovel IS element, IS621, of the IS110/IS492 family transposes to a specific site in repetitive extragenic palindromic sequences in Escherichia coli."J. Bacteriol.. 185. 4891-4900 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kato, N., yamazoe, K., Han, C.-G., Ohtsubo, E.: "New insertionsequence elements in the upstream region of cfiA in imipenem-resistant Bacteroides fragilis strains."Antimicrob. Agents Chemother.. 47. 979-985 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Urasaki, A., Sekine, Y., Ohtsubo, E.: "Transposition of cyanobacterium insertion element ISY100 in Escherichia coli."J. Bacteriol.. 184. 5104-5112 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ohtsubo, E., Minematsu, H., Tsuchida, Sekine, Y.: "Intermediate molecules generated by transposase in the pathways of transposition of bacterial insertion element IS3."Adv. Biophys.. 38. 125-139 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ohta, S., Yoshimura, E., Ohtsubo, E.: "Involvement of two domains with helix-turn-helix and zinc finger motifs in the binding of IS1 transposase to terminal inverted repeats."Mol. Microbiol.. 52. (2004)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ikeda, H., Iida, S., Ohtsubo, E.(Eds): "Novel developments on genetic recombination : DNA double-strand break and DNA end-joining"Advances in Biophysics. Vol.38. 1-234 (2004)

    • Description
      「研究成果報告書概要(欧文)」より

URL: 

Published: 2005-04-19  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi