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2001 Fiscal Year Final Research Report Summary

Cross-talk between DNA repaif and recombination : two kinds of mechanisms that are mediated by DNA end-joining

Research Project

Project/Area Number 10480189
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionThe Kitasato Institute (1999-2001)
The University of Tokyo (1998)

Principal Investigator

IKEDA Hideo  The Kitasato Institute, Center for Basic Research, Research Director, 基礎研究所, 部長 (10012775)

Co-Investigator(Kenkyū-buntansha) TATEBAYASI Kazuo  Tokyo University, Institute of Medical Science, Research fellow, 医科学研究所, 助手 (50272498)
Project Period (FY) 1998 – 2001
KeywordsChromosomal aberration / DNA double-strand break / DNA end-joining / Illegitimate recombination / DNA gyrase / UvrAB helicase / DNA glycosylase / Sgs l helicase
Research Abstract

We analysed mechanisms of illegitimate recombination and its relationship with mechanisms of DNA repair, using newly developed assay systems for illegitimate recombination in Escherichia coli, budding yeast, fission yeast and mouse. Based on the analyses of E.coil DNA gyrase mutants that confer a hyper-recombination phenotype, we showed that several α-helix structures of DNA gyrase plays an important role in illegitimate recombination. It is also shown that E.coil DNA binding protein HU has an activity that suppress DNA gyrasemediated illegitimate recombination, thus playing a role in regulation of the recombination. We have also found that DnaB helicase, exonuclease VIII (RecE), RecT, and DNA ligase are involved in DNA damage-induced illegitimate recombmation in E. coli. Furthermore, many DNA repair enzymes UvrA, UvrB, MutM, Tag, AIkA, ExoI, H-NS, and StpA play important roles for suppression of DNA damage-induced illegitimate recombination. In Saccharomyces cerevisiae, it was found that a DNA topoisomemse II inhibitor induces illegitimate recombination, suggesting that DNA topoisomemse II promotes DNA double-strand bieak and then illegitimate recombination throgh DNA end-joining. It is, on the other hand, shown that Sgsl protein suppresses spontaneous illegitimate recombination. Human BLM and WRN proteins also suppressed illegitimate recombination in budding yeast. In addition, we showed that budding yeast Sccl and fission yeast Dhpl proteins are involved in DNA repair and chromosome segregation and that budding yeast Whip and fission yeast Mogi and Hskl kinase interact with Sgs 1 and Sec 1, respectively. Based on these results, we proposed several models for illegitimate recombination in E.coil and yeast.

  • Research Products

    (44 results)

All Other

All Publications (44 results)

  • [Publications] Heo, S.-J., Tatebayashi, K., Kato, J., Ikeda, H.: "Budding yeast RHC21 gene, a homologue of fission yeast rad21^+ gene, is essential for chromosome segregation"Mol.Gen.Genet.. 257. 149-156 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yamagata, K.Kato, J., Shimamoto, A., Goto, M.Furuichi, Y., Ikeda, H.: "Bloom's and Werner's syndrome genes suppress hyperrecombination in yeast sgs1 mutant: Implication for genomic instability in human diseases"Proc.Natl.Acad.Sci.USA. 95. 8733-8738 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato, Y., Shimamoto, A., Shobuike, T., Sugimoto, M., Ikeda, H., Kuroda, S., Furuichi, Y.: "Cloning and Characterization of Human Sep1 (hSEP1) Gene and Cytoplasmic Localization of its Product"DNA Res. 5. 241-246 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shanado, Y., Kato, J., Ikeda, H.: "Escherichia coli HU protein suppresses DNA-gyrase-mediated illegitimate recombination and SOS induction"Genes Cells. 3. 511-520 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tsukamoto, Y., Ikeda, H.: "Double-strand break repair mediated by DNA end-joining"Genes Cells. 3. 135-144 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tatebayashi, K., Kato, J., Ikeda, H.: "Isolation of a Schizosaccharomyces pombe rad21ts Mutant That Is Aberrant in Chromosome Segregation, Microtubule Function, DNA Repair and Sensitive to Hydroxyurea : Possible Involvement of Rad21 in Ubiquitin-Mediated Proteolysis"Genetics. 148. 49-57 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ashizawa, Y., Yokochi, T., Ogata, Y., Shobuike, Y., Kato, J., Ikeda, H.: "Mechanism of DNA gyrase-mediated illegitimate recombination : Characterization of Escherichia coli gyrA mutations that confer hyperrecombination phenotype"J.Mol.Biol.. 289. 447-458 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Heo, S.-J., Tatebayashi, K., Ikeda, H.: "The budding yeast cohesin gene SCC1/MCD1/RHC21 genetically interacts with PKA, CDK and APC"Curr.Genet.. 36. 329-338 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yamashita, T., Hanada, K., Iwasaki, M., Yaznaguchi, H., Ikeda, H.: "Illegitimate recombination induced by overproduction of DnaB helicase in Eschierichia coli"J.Bacteriol.. 181. 4549-4553 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nohmi, I., Suzuki M., Masumura, K., Yamada, M., Matsui, K., Ueda, 0., Suzuki, H., Katoh, M., Ikeda, H., Sofuni, T.: "Spi(-) selection : An efficient method to detect gamma-ray-induced deletions in transgenic mice"Environ.Mol.Mutagen. 34. 9-15 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Heo, S.-J., Tatebayashi, K., Ohsugi, I., Shimamoto, A., Furuichi, Y., Ikeda, H.: "Bloom's syndrome gene suppresses premature aging caused by Sgs1 deficiency in yeast"Genes Cells. 4. 619-625 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Onda, M., Hanada, K., Kawachi, H., Ikeda.H.: "Escherichia coli MutM suppresses illegitimate recombination induced by oxidative stress"Genetics. 151. 439-446 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yamaguchi, H., Hanada, K., Asami, Y., Ikeda, H.: "Control of genetic stability in Escherichia coli : the SbcB 3'-5' exonuclease suppresses illegitimate recombination promoted by the RecE 5'-3' exonuclease"Genes Cells. 5. 101-109 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hanada, K., Iwasaki, M., Ihashi, S., Ikeda, H.: "UvrA and UvrB suppresses illegitimate recombination : Synergistic action with RecQ helicase"Proc.Natl.Acad.Sci.USA. 97. 5989-5994 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shanado, Y., Hanada, K., Ikeda.H.: "Suppresion of gamma-ray-induced illegitimate recombination in Escherichia coli by the DNA binding protein H-NS"Mol.Gen.Genet.. 265. 242-248 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tatebayashi, K., Tani, T., Ikeda, H.: "Fission yeas Mog1p homologue, which interacts with the small GTPase Ran, is required for mitosis-to-interphase transition and poly(A)^+ RNA metabolism"Genetics.. 157. 1513-1522 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kang, S.-W., Ikeda, H.: "WRN homolgues in non-human systems. In Werner syndrome : Implications for aging and cancer"Gann Monograph on Cancer Reserch. 49. 137-145 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Onda, M., Yamaguchi, J., Hanada, K., Asami, Y., Ikeda, H.: "Role of DNA ligase in the illegitimate recombination that generates λbio transducing phages"Genetics.. 158. 29-39 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takeda, T., Ogino, K., Tatebayashi, K., Ikeda, H., Arai, K., Masai, H.: "Regulation of initiation of S phase, replication checkpoint signaling and maintenance of mitotic chromosome structures during S phase by Hsk1 kinase in the fission yeast"Mol.Biol.Cell.. 12. 1257-1274 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shobuike, T., Tatebayashi, K., Tani, T., Sugano, S., Ikeda, H.: "The dhp1^+ encoding a putative nuclear 5'-3' exoribonuclease, is required for proper chromosome segregation in fession yeast"Nucleic Acid Res.. 29. 1326-1333 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hanada, K., Yamashita, T., Shobuike, Y., Ikeda, H.: "Role of DnaB belicase in UV-induced illegitimate recombination in E. coli"J.Bacteriol.. 183. 4964-4969 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawabe, Y., Branzei, D., Hayashi, T., Suzuki, H., Masuko, T., Heo, S.J., Ikeda, H., Shimamoto, A., Furuichi, Y., Seki, M., Enomoto, T.: "A novel protein interacts with the Werner's syndrome gene product physically and functionally"J.Biol.Chem.. 276. 20364-02369 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Heo, S.-: "Budding yeast RHC21 gene, a homologue of fission yeast rad21^+ gene, is essential for chromosome segregation."Mol. Gen. Genet.. 25. 149-156 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tatebayashi, K., Kato, J., and Ikeda, H.: "Isolation of a Schizosaccharomyces pombe rad21ts muatnt which is aberrant in chromosome segegation, microtuble function, DNA repair and DNA replication : possble involvemet of Rad21 in ubiquitin-mediated proteolysis."Genetics. 148. 49-57 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamagata, K., Kato, J., Shimamoto, A., Goto, M., Furuichi, Y., and Ikeda, H.: "Booom's and Wemer's syndrome genes suppress hyperrecombination in yeast sgs1 mutant : Implication for genomic instability in human diseases."Proc. Natl. Acad. Sci. USA. 95. 8733-8738 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shanado, Y., Kato, J. and Ikeda, H: "Escherichia coli HU protein suppreses DNA-gyrase-mediated illegitimate recombination and SOS induction."Genes Cells. 3. 511-520 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato, Y., Shimamoto, A., Shobuike, T., Sugimoto, M., Ikeda, H., Kuroda, S. and Furiichi, Y.: "Coloning and characterization of human Sep1 (hSEP1) gene and cytoplasmic localization of its product."DNA Res.. 5. 241-246 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Onda, M., Hanada, K., Kawachi, H. and Ikeda, H.: "Escherichia coli MutM suppresses illegitimate recombination induced by oxidative stress."Genestics. 151. 439-446 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ashizawa, Y., Yokochi, T., Ogata, Y., Shobuike, Y., Kato, J., and Ikeda, H.: "Mechanism of DNA gyrase-mediated illegitimate recombination : Characterization of Escherichia coli gyrA mutations that confer hyperrecombination phenotype."J. Mol. Biol.. 289. 447-458 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Heo, S.-J., Tatebayashi, K. and Ikeda, H.: "The budding yeast cohesin gene SCC1/MCD1/RHC21 genetically interacts with PKA, CDK and APC"Curr. Genet. 36. 329-338 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamashita, T., Hanada, K, Iwasaki, M., Yamaguchi, H. and Ikeda, H.: "Illegitimate recombination induced by overproduction of DnaB helicase in Eschierichia coli."J. Bacteriol. 181. 4549-4553 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nohmi, T., Suzuki, M., Masumura, K., Yamada, M., Matsui, K., Ueda, O., Suzuki, H., Katoh, M., Ikeda, H., Sofuni, T.: "Spi(-) selection : An efficient method to detect gamma-ray-induced deletions in transgenic mice."Environ Mol. Mutagen. 34. 9-15 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Heo, S.-J., Tatebayashi, K., Ohsugi, I., Shimamoto, A., Furuichi, Y. and Ikeda, H.: "Bloom's syndrome genesuppresses premature aging caused by Sgs1 defictiency in yeast."Genes Cells. 4. 619-625 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamaguchi, H., Hanada, K., Asami, Y., Kato, J. and Ikeda, H.: "Control of genetic stability in Escherichia coli : the SbcB 3'-5' exonuclease suppresses illegitimate recombination promoted by the RecE 5'-3' exonuclase."Genes Cells. 5. 101-109 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hanada, K., Iwasaki, M., Ihashi, S. and Ikeda, H.: "UvrA and UvrB suppresses illegitimate recombination : Synergistic action with RecQ helicase."Proc. Nat1.Acad. Sci.. USA 97. 5989-5994 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shanado, Y., Hanada, K., and Ikeda, H.: "Suppression of gamma-ray-induced illegitimate recombination in Escherichia coli by the DNA binding protein H-NS."Mol. Gen Genet.. 265. 242-248 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tatebayashi, K., Tani, T., and H. Ikeda.: "Fission yeast Mog1p homologue, which interacts with the small GTPas Ran, is required for mitosis-to-intephase transition and poly(A)+ RNA metabolism."Genetics. 157. 1513-1552 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Onda, M., Yamaguchi, J., Hanada, K., Asami, Y., and Ikeda, H.: "Role of DNA ligase in the illegitimate recombination that generates λbio transducing phages."Genetics. 158. 29-39 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takeda, T., Ogino, K., Tatebayashi, K., Ikeda, H., Arai, k., and Masai, H.: "Regulation of initiation of S phase, replication checkpoint signaling and maintenance of mitotic chromosome structures during S phase by Hsk1 kinase in the fission yeast."Mol. Bil. Cell.. 12. 1257-1274 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shobuike, T., Tatebayashi, K., Tani, T., Sugano, S., and Ikeda, H.: "The dhpl^+ gene, encoding a putative nuclear5'-3' exoribonuclase, is required for proper chromosome segregation in fission yeast."Nucleic Acid Res. 29. 1326-1333 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] anada, K., Yamashita, T., Shobuike, Y., and Ikeda, H.: "Role of DnaB helicase in UV-induced illegitimate recombination in E.coli."J. Bacteriol.. 183. 4964-4969 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kawabe, Y., Branzei, D Hayashi, T., Suzuki, H., Masuko, T., Onoda, T., Heo, S. J., Ikeda, H., Shimamoto, A., Furuichi, Y., seki, M., and Enomoto, T.: "A novel protein interacts with the Werner's syndrome gene product physically and functionally."J. Biol. Chem.. 276. 20364-20369 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tsukamoto, Y. and Ikda, H.: "Double-strand break repair mediated by DNA end-joining."Genes Cells. 3. 135-144 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kang, S.-W. and Ikeda, H.: "WRN homologues in non-human systems."Gann Monograph on Cancer Research.. 49. 137-145 (2001)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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