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2001 Fiscal Year Final Research Report Summary

Generation and characterization of enhancer trap lines in rice

Research Project

Project/Area Number 10556003
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Breeding science
Research InstitutionNatiomal Institute of Genetics

Principal Investigator

KURATA Nori  Natiomal Institute of Genetics, Genetic Strains Research Center, Associate Professor, 系統生物研究センター, 助教授 (90178088)

Co-Investigator(Kenkyū-buntansha) NONOMURA Kenichi  Natiomal Institute of Genetics,Experimental Farm,Assistant Professor, 実験圃場, 助手 (10291890)
ITO Yukihiro  Natiomal Institute of Genetics,Genetic Strains Research Center,Assistant Professor, 系統生物研究センター, 助手 (70280576)
Project Period (FY) 1998 – 2001
Keywordsキーワード無し / エンハンサートラップ / Ac / Ds / GUS遺伝子 / 転移系統
Research Abstract

(1) Generation of transgenic rice lines having single copy (42 lines) or double copies (above 50 lines) of Ds-GUS sequences and 6 lines possesing 35S-Ac transposase genes were generated. Examination for DsGUS transposition frequencies by screening F2 plants derived from cross combinations between four DsGUS and six 35S-Ac TPase lines with PCR method showed average frequency was 6% (675 / 10, 524 plants). (2) The 35S-Ac TPase line which showed higest activity to traspose Ds-GUS element was crossed with 22 Ds-GUS lines. A part ofF2 progenies, 926 out of 3277 F2 plants, exhibited transposition and average frequency of Ds-GUS transposition was calculated 28%. (3) We next screened 540 F2 transposants for GUS expression by staining almost all tissues in different developmental stages ; leaf blade, leaf sheath, auricle, ligule, root, node, rachis, papillae, style, ovary, anther, filament, lodicle, palea, lemma, upper glume, lower glume etc. Between 10 to 20 % of the transposants examined so far revealed to show trapped enahancer-GUS activity in any tissue. (4) To detect original and transposed insertion sites of Ds-GUS elememt, we isolated flanking genome sequences of the insertion positions and sequenced. A part of the flanking sequences (about 100) isolated and sequenced could be mapped through homology searching against chromosome assigned genome sequences. Remaining clones will be soon mapped on the fully aligned genome sequences

  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] Sentoku, N., sato, Y., Kurata, N., Ito, Y., Kitano, H., Matsuoka, M.: "ARegional expression of the rice KN1-type homeobox gene family during embryo, shoot and flower development"Plant Cell. 11. 1651-1664 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ito, Y., Eiguchi, M., Kurata, N.: "KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice"Genesis. vol.30. 231-238 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Miyoshi, K., Kurata, N., Nonomura, K.I.: "Detection of the pre-meiotic DNA synthesis in pollen mother cells by immunofluorescence technique in rice"Rice Genet. Newsl. 18(in press). (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Harushima, Y., Nakagahra, M., Yano, M., Sasaki, T., Kurata, N.: "A genome-wide survey of reproductive barriers in an intraspecific hybrid"Genesis. 159. 883-892 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ahn, B.O., Miyoshi, K., Itoh, J.I., Nagato, Y., Kurata, N.: "A genetic and physical mapping of the region containing plastochron1, a heterochronic gene, in rice"Theor. Appl. Genet.. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ito, Y., Hirochika, H., Kurata, N.: "Organ specific alternative transcripts of KNOX family class 2 homeobox genes of rice"Gene. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kurata, N., Fukui K.: "'Monograph in genus Oryza.'"Chromosome research in genus Oryza(in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nonomura, K-I and Kurata, N.: "Organization of 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomes"Mol. Gen. Genet. 261. 1-10 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ito, Y., Eiguchi, M. and Kurata, N.: "Expression of novel homeobbx series in early embryogenesis in rice"Bidcliim. Biophys. Acta. 1444. 445-450 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ashikawa, L, Kurata, N., Saji, S., Umehara, Y. and Sasaki, T.: "Application of restriction fingerprinting with a rice microsatellite sequence to assembling rice YAC clones."Genome. 42. 330-337 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sentoku, N., Sato, Y., Kurata, N., Kitano, H and Matsuka, M: "Regional expression of the rice KN1-type homeobox gene family during embryo, shoot and flowerDevelopment"Plant Cell. 11. 1651-1664 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Miyoshi, K and Kurata, N.: "Cloning of two cDNAs encoding theHAP3 subunit protein from developing rice seeds."Rice Genet. Newsl. 16. 103-104 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ahn, B. O., Miyoshi, K., Itoh, J-L Nagatp Y and Kurata, N: "Mapping of a rice heterochronic gene PJal regulating the plastochron and the duration of vegetative phase."Rice Genet. Newsl. 16. 36-37 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ito, Y., Eiguchi, M. and Kurata, N.: "Somatic and germinal transposition of a maize transposable element Ds in rice."Rice Genet. Newsl. 17. 110-111 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nonomura, K-I and Kurata, N.: "The centromere composition of multiple repetitive sequences on rice chromosome 5."Chromosoma. 110. 284-291 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ito, Y., Eiguchi, M. and Kurata, N.: "KNOX home box genies are sufficient in maintaining cultured cells in an undifferentiated state in rice."Genesis. 30. 231-238 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Harushima, Y, Nakagahra, M., Yano, M., Sasaki, T, and Kurata, N: "A genome-wide survey of reproductive barriers in an infeaspebific hybrid"Genome. 159. 883-892 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Miyoshi, K., Kurata, N. and Nononiura, Kl: "Detection of the pre-meiotic DNA synthesis in pollen mother cells division in the anther and ovule of rice"Rioe Genft Newsl. 18. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nonomura. K.I., Miyoshn K.J Eigucbi, M., Miyapi A Hirochika, H and Kurata, N: "acdl mutant aberrant for archesporial cell division in the anther and ovule of rice."Rice Genet.Newsl.. 18. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Harushima, Y., Nakagahara, M., Yano, M., Sasaki, T, and Kurata, N.: "Diverse variation of reproductive barriers in three intraspecific rice crosses"Genetics. 160. 313-322 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ahn, B. O., Miyoshi, K., Itoh, J. L Nagato, Y arid Kurata, N: "A genetic and physica I mapping of the region containing plastochronl, a heterochronic gene, in rice"Thecr, Appl Gent. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kurata, N., Nonomura K-L and Harushima, Y: "Rice genome organization focusing on centromere and genome interaction studies."Biological Briefings. Anals of Botany. 86 ; (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kurata N. and Fukui K: "Chromosome research in geniis Oryza."Monograph in genus Oryza. ' Nanda JS ed Springer,. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ito, Y., Hirochika, H. and Kurata, N.: "Organ specific alternative transcripts of KNOX family classs 2 homeobox genes of rice."Gene. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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