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2002 Fiscal Year Final Research Report Summary

Crystal and surface structure analysis of biosynthesized aliphatic polyesters and its depolymerase

Research Project

Project/Area Number 11217216
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionRIKEN Institute

Principal Investigator

IWATA Tadahisa  RIKEN Institute, Polymer Chemistry Laboratory, Senior Researcher, 高分子化学研究室, 副主任研究員 (30281661)

Co-Investigator(Kenkyū-buntansha) HISANO Tamao  RIKEN Institute, Theoretical Structural Biology Laboratory, Research Scientist, 理論構造生物学研究室, 研究員 (20312267)
HIRAISHI Tomohiro  RIKEN Institute, Polymer Chemistry Laboratory, Research Scientist, 高分子化学研究室, 研究員 (20321804)
Project Period (FY) 1999 – 2002
KeywordsBiodegradable Aliphatic Polyesters / Single Crystal / Film / Crystal Structure / Surface Structure / Depolymerase / High-ordered Structure / Biodegradable Mechanism
Research Abstract

The biodegradability of aliphatic polyesters, which are produced by biosynthesis and chemosynthesis, strongly correlated to the polymer morphology such as crystallinity, molecular orientation, chain packing state and crystal surface, in addition to the chemical structures. For elucidation of biodegradation mechanism of crystal regions by atomic level, lamellar single crystals of poly ([R]-3-hydroxybutyrate) (P(3HB)) and its copolymers, poly ([R]-3-hydroxyvalerate) (P(3HV)), poly (L-lactic acid) (PLLA). poly (β-propiolactone) (PPL), poly (δ-valerolactone) (PVL), poly (4-hydroxybutyrate) (P(4HB)), poly (ε-caprolactone) (PCL) and poly (ethylene succinate) (PES) were prepared from dilute solution by isothermal crystallization, and the crystal structures and morphologies were investigated by means of mainly transmission electron microscopy and atomic force microscopy. All single crystals were intramolecular single crystals and these crystals gave well-resolved electron diffractograms. Three … More dimensional crystal structures of PPL, P (4HB) and PVL were revealed by X-ray and electron diffractions and computer simulations.
The enzymatic degradations of lamellar crystals of P(3HB) and its copolymers, PLLA, PPL, PCL and PES were carried out with extracellular PHB depolymerases or proteinase-K or lipase, and it was reveled that enzymatic degradation of lamellar crystals progressed from crystal edges and ends rather than the chain-folding surfaces of crystals without decreasing the molecular weights and lamellar thickness. These results suggest that the attack by the active site of enzyme takes place at the disordered chain-packing regions of crystals, that is, disordered lateral sides which have higher mobility of molecular chains are preferentially degraded.
We succeeded to crystallize PHB depolymerase purified from Penicillium funiculosum by vapor diffusion. High-resolution data were collected under cryogenic conditions with synchrotron radiation. Native data to a resolution of 1.7 A have been collected with an R_<merge> of 6.8%. Less

  • Research Products

    (64 results)

All Other

All Publications (64 results)

  • [Publications] T.Iwata, Y.Doi, F.Kokubu, S.Teramachi: "Alkaline hydrolyses of solution-grown poly([R]-3-hydroxybutyrate) single crystals"Macromolecules. 32. 8325-8330 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi, S.Nakayama, H.Sasatsuki, S.Teramachi: "Structure and enzymatic degradation of poly(3-hydroxybutyrate) copolymer single crystals with an extracellular PHB depolymerase from Alcalijenes faecalis T1"International Journal of Biological Macromolecules. 25. 169-176 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Abe, Y.Kikkawa, H.Aoki, T.Akehata, T.Iwata, Y.Doi: "Crystallization behavior and thermal properties for melt-crystallized poly[(R)-3-hydroxybutyric acid-co-6-hydroxyhexanoic acid] films"Macromolecules. 25. 177-183 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi: "Crystal structure and biodegradation of aliphatic polyester crystals"Macromolecular Chemistry and Physics. 200. 2429-2442 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Abe, Y.Kikkawa, T.Iwata, H.Aoki, T.Akehata, Y.Doi: "Microscopic visualization on crystalline morphologies of thin films for poly[(R)-3-hydroxybutyric acid] and its copolymer"Polymer. 41. 867-874 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] W.-K.Lee, T.Iwata, H.Abe, Y.Doi: "Studies on the enzymatic degradation of solution-grown lamellar crystals of poly[(R)-3-hydroxybutyrate] : Defects in crystals"Macromolecules. 33. 9535-9541 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Furuhashi, T.Iwata, P.Sikorski, E.Atkins, Y.Doi: "Structure and morphology of the aliphatic polyester poly-β-propiolactone in solution-grown chain-folded lamellar crystals"Macromolecules. 33. 9423-9431 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi: "Morphology and crystal structure of solution-grown poly([R]-3-hydroxyvalerate) single crystals"Macromolecules. 33. 5559-5565 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 古橋幸子, 岩田忠久, 土肥義治: "ポリ(β-プロピオラクトン)単結晶の構造"膜(MEMBRANE). 25(6). 302-304 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Kikkawa, Y.Inoue, H.Abe, T.Iwata, Y.Doi: "In situ AFM observation of lamellar crystal growth in thin film for poly[(R)-3-hydroxybutyric acid-co-6-hydroxyhexanoic acid] at a high crystallization temperature of 100℃"Polymer. 42. 2707-2710 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] W.-K.Lee, T.Iwata, F.Su, Y.Furuhashi, Y.Doi: "Visualization on recrystallization of solution-grown poly[(R)-3-hydroxybutyrate] lamellar crystals"Macromoleculer Rapid Communications. 22. 629-632 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Murase, T.Iwata, Y.Doi: "Direct observation of enzymatic degradation behaviour of poly[(R)-3-hydroxybutyrate] lamellar single crystals by atomic force microscopy"Macromolecules. 34. 5848-5853 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Murase, T.Iwata, Y.Doi: "Atomic torte microscopy investigation of poly([R]-3-hydroxybutyrate) lamellar single crystals : Relationship between molecular weight and enzymatic degradation behaviour"Macromolecular Bioscience. 1. 275-281 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Fujiwara, M.Miyamoto, Y.Kimura, T.Iwata, Y.Doi: "Self-organization of diblock and triblock copolymers of poly(L-lactide) and poly(oxyethylene) into nano-structured bands and their network system"Macromolecules. 34. 4043-4050 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi: "Alkaline-hydrolysis of poly(L-lactic acid) solution-grown single crystals"Sen-i Gakkaishi. 572. 172-177 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Kikkawa, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "In situ observation of crystal growth for poly[(S)-lactide] by temperature-controlled atomic force microscopy"Biomacromolecules. 2. 940-945 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Fujiwara, T.Iwata, Y.Kimura: "Highly stabilized nano-structures from poly(L-lactide)-block-poly(oxyethylene) having a photo-reactive end functionality"Journal of Polymer Science : Part A : Polymer Chemistry. 39. 4249-4254 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Furuhashi, T.Iwata, Y.Doi: "Solution-grown single crystals of poly(β-propiolactone)"Journal of Material Science. 36. 4307-4313 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Furuhashi, T.Iwata, Y.Doi: "Enzymatic degradation and adsorption on solution-grown lamellar crystals of poly(β-propiolactone) with an extracellular PHB depolymerase"Sen-i Gakkaishi. 57. 184-190 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] F.Su, T.Iwata, K.Sudesh, Y.Doi: "Electron and X-ray diffraction study on poly(4-hydroxybutyrate)"Polymer. 42. 8915-8919 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Furuhashi, P.Sikorski, E.Atkins, T.Iwata, Y.Doi: "Structure and morphology of the aliphatic polyester poly(b-valerolactone) in solution-grown chain-folded lamellar crystals"Journal of Polymer Science : Part B : Polymer Physics. 39. 2622-2634 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi, K.Isono, Y.Yoshida: "Morphology and enzymatic degradation of solution-grown single crystals of poly(ethylene succinate)"Macromolecules. 34. 7343-7348 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Furuhashi, F.Su, Y.Doi: "Single crystals morphologies of biodegradable aliphatic polyesters"RIKEN Review. 42. 15-18 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Murase, T.Iwata, Y.Doi: "Enzymatic degradation mechanism of a solution-grown poly((R)-3-hydroxybutyrate] single crystal with an extracellular polyhydroxybutyrate depolymerase purified from Alcaligenes faecalis T1"RIKEN Review. 42. 19-22 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Murase, Y.Suzuki, Y.Doi, T.Iwata: "Non-hydrolytic fragmentation of a poly[(R)-3-hydroxybutyrate] single crystal revealed by use of a mutant of polyhydroxybutyrate depolvmerase"Biomacromolecules. 3. 312-317 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Kikkawa, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "Crystal structure and enzymatic degradation of melt-crystallized thin films of random copolyesters of (R)-3-hydroxybutyric acid with (R)-3-hydroxyalkanoic acids"Polymer Degradation and Stability. 76. 467-478 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, M.Shiromo, Y.Doi: "Surface structure of poly([R]-3-hydroxybutyrate) and its copolymer single crystals before and after enzymatic degradation with an extracellular PHB depolymerase"Macromolecular Chemistry and Physics. 203. 1309-1316 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Kikkawa, T.Murase, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "Real-time enzymatic degradation study on poly[(R)-3-hydroxybutyric acid] copolymer thin film by atomic force microscopy in buffer solution"Macromolecular Bioscience. 2. 189-194 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Kikkawa, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "Crystallization, stability and enzymatic degradation of poly [(S)-lactide] thin film"Biomacromolecules. 3. 350-356 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi: "Morphology and enzymatic degradation of poly(e-caprolactone) single crystals : Does a polymer single crystal consist of micro-crystals?"Polymer International. 51. 852-858 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi: "Biochemical Principles and Mechanisms of Biosynthesis and Biodearadation of Polymers"Wiley-VCH, Weinheim, Ed. by A. Steinbchel. 408 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi: "Biopolymers, Volume 3b : Polyesters II, Properties and Chemical Synthesis"WILEY-VCH Verlag GmbH, Weinheim, eds. by Steinbchel and Doi. 468 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 岩田忠久: "グリーンプラスチック最新技術"シーエムシー出版, 井上義夫監修. 280 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Iwata, Y.Doi, F.Kokubu, S.Teramachi: "Alkaline hydrolyses of solution-grown poly ([R]-3-hydroxybutyrate) single crystals"Macromolecules. 32. 8325-8330 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi, S.Nakayama, H.Sasatsuki, S.Teramachi: "Structure and enzymatic degradation of poly (3-hydroxybutyrate) copolymer single crystals with an extracellualr PHB depolymerase from Alcaligenes faecalis T1"International Journal of Biological Macromolecules. 25. 169-176 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Abe, Y.Kikkawa.H.Aoki, T.Akehata, T.Iwata, Y.Doi: "Crystallization behavior and thermal properties for melt-crystallized poly [(R)-3-hydroxybutyric acid-co-6-hydroxyhexanoic acid] films"International Journal of Biological Macromolecules. 25. 177-183 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi: "Crystal structure and biodegradation of aliphatic polyester crystals"Macromolecular Chemistry and Physics. 200. 2429-2442 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi: "Enzymatic degradation of biosynthetic and chemosynthetic polymers"Biochemical Principles and Mechanisms of Biosynthesis and Biodegradation of Polymers, Ed. by A. Steinbuchel, Wiley-VCH, Weineheim. 214-221 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Abe, Y.Kikkawa, T.Iwata, H.Aoki, T.Akehata, Y.Doi: "Microscopic visulization on crystalline morphologies of thin films for poly [(R)-3-hydroxybutyric acid] and its copolymer"Polymer. 41. 867-874 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] W.-K.Lee, T.Iwata, H.Abe, Y.Doi: "Studies on the enzymatic degradation of solution-grown lamellar crystals of poly [(R)-3-hydroxybutyrate] : Defects in crystals"Macromolecules. 33. 9535-9541 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Furuhashi, T.Iwata, P.Sikorski, E.Atkins, Y.Doi: "Structure and morphology of the aliphatic polyester poly-b-propiolactone in solution-grown chain-folded lamellar crystals"Macromolecules. 33. 9423-9431 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi: "Morphology and crystal structure of solution-grown poly ([R]-3-hydroxyvalerate) single crystals"Macromolecules. 33. 5559-5565 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Kikkawa, Y.Inoue, H.Abe, T.Iwata, Y.Doi: "In situ AFM observation of lamellar crystal growth in thin film for poly [(R)-3-hydroxybutyric-co-6-hydroxyhexanoic acid] at a high crystallization temperature of 100℃"Polymer. 42. 2707-2710 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] W.-K.Lee, T.Iwata, F.Su, Y.Furuhashi, Y.Doi: "Visualization on recrystallization of solution-grown poly [(R)-3-hydroxybutyrate] lamellar crystals"Macromolecular Rapid Communications. 22. 629-632 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Murase, T.Iwata, Y.Doi: "Direct observation of enzymatic degration behavirous of poly [(R)-3-hydroxybutyrate] lamellar single crystals by atomic force microscopy"Macromolecules. 34. 5848-5853 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Murase, T.Iwata, Y.Doi: "Atomic force microscopy investigation of poly ([R]-3-hydroxybutyrate) lamellar single crystals : Relationship between molecular weigth and enzymatic degradation behavious"Macromolecular Bioscience. 1. 275-281 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Fujiwara, M.Miyamoto, Y.Kimura, T.Iwata, Y.Doi: "Self-organization of diblock and triblock copolymers of poly (L-lactide) and poly (oxyethylene) into nano-structured bands and their network system"Macromolecules. 34. 4043-4050 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi: "Alkaline-hydrolysis of poly (L-lactic acidd) solution-grown single crystals"Sen-i Gakkaishi. 57. 172-177 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Kikkawa, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "In situ observation of crystal growth for poly [(S)-lactide] by temperature-controlled atomic force microscopy"Biomacromolecules. 2. 940-945 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Fujiwara, T.Iwata, Y.Kimura: "Highly stabilized nano-structures from poly (L-lactide)-block-poly (oxyethylene) having a photo-reactive end functionality"Journal of Polymer Science : Part A : Polymer Chemistry. 39. 4249-4254 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Furuhashi, T.Iwata, Y.Doi: "Solution-grown single crystals of poly (β-propiolactone)"Journal of Material Science. 36. 4307-4313 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Furuhashi, T.Iwata, Y.Doi: "Enzymatic degradation and adsorption on solution-grown lamellar crystals of poly (β-propiolactone) with an extracellular PHB depolymerase"Sen-i Gakkaishi. 57. 184-190 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] F.Su, T.Iwata, K.Sudesh, Y.Doi: "Electron and X-ray diffraction study on poly (4-hydroxybutyrate)"Polymer. 42. 8915-8918 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Furuhashi, P.Sikorski, E.Atkins, T.Iwata, Y.Doi: "Structure and morphology of the aliphatic polyester poly (δ-valerolactone) in solution-grown chain-folded lamellar crystals"Journal of Polymer Science : Part B : Polymer Physics. 39. 2622-2634 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi, K.Isono, Y.Yoshida: "Morphology and enzymatic degradation of solution-grown single crystals of poly (ethylene succinate)"Macromolecues. 34. 7343-7348 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Furuhashi, F.Su, Y.Doi: "Single crystais morphologies of biodegradable aliphatic polyesters"RIKEN Review. 42. 15-18 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Murase, T.Iwata, Y.Doi: "Enzymatic degradation mechanism of a solution-grown poly [(R)-3-hydroxybutytate] single crystal with an extracelluar polyhydroxybutyrate depolymerase purified from Alcaligenes faecalis T1"RIKEN Review. 42. 19-22 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Murase, Y.Suzuki, Y.Doi, T.Iwata: "Non-hydrolytic fragmentation of a poly [(R)-3-hydroxybutyrate] single crystal revealed by use of a mutant of polyhydroxybutyrate depolymerase"Biomacromolecules. 3. 312-317 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Kikkawa, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "Crystal structure and enzymatic degradation of melt-crystallization thin films of random copolymesters of (R)-3-hydroxubutyric acid with (R)-3-hydroxyalkanoic acids"Polymer Degradation and Stability. 76. 467-478 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, M.Shiromo, Y.Doi: "Surface structure of poly ([R]-3-hydroxybutytate) and its copolymer single crystals before and after enzymatic degradation with an extracellular PHB depolymerase"Macromolecular Chemistry and Physics. 203. 1309-1316 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Kikkawa, T.Murase, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "Real-time enzymatic degradation study on poly [(R)-3-hydroxybutyric acid] copolymer thin film by atomic force microscopy in buffer solution"Macromolecular Bioscience. 2. 189-194 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Kikkawa, H.Abe, T.Iwata, Y.Inoue, Y.Doi: "Crystallization, stability and enzymatic degradation of poly [(S)-lactide] thin film"Biomacromolecules. 3. 350-356 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi: "Morphology and enzymatic degradation of poly (ε-caprolactone) single crystals : Does a polymer single crystal consist of microcrystals?"Polymer International. 51. 852-858 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Iwata, Y.Doi: "Struture and hydrolysis of polyester single crystals"Biopolymers, Volume 3b : Polyesters II, Properties and Chemical Synthesis, WILEY-VCH Verlag GmbH, Weinheim, eds. by Steinbuchel and Doi. Chapter 8. 203-229 (2002)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2005-04-19  

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