• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2003 Fiscal Year Final Research Report Summary

Elucidation of mechanism for fixation of mutations occurred in germ cells using medaka.

Research Project

Project/Area Number 11236204
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

FUKAMACHI Shoji  The University of Tokyo, Graduate School of Frontier Sciences, Research Associate, 大学院・新領域創成科学研究科, 助手 (20323446)

Co-Investigator(Kenkyū-buntansha) SHIMA Akihiro  The University of Tokyo, Graduate School of Frontier Sciences, Professor Emeritus, 大学院・新領域創成科学研究科, 名誉教授 (60011590)
Project Period (FY) 1999 – 2003
Keywordscells / medaka / mechanism for maintaining of genome stability / apoptosis / p53
Research Abstract

Germ-cell mutations caused in an organism are the source of genetic variation that is required for evolution, but at the same time, they may accumulate deleterious traits within a species. We have measured spontaneous germ-cell mutation rate at the pigmentation loci of the Medaka The resulting value was about 8×10^<-6>/locus/generation, indicating that vertebrate species share a common level of germ-cell mutation rate. Based on g-irradiation study, apoptosis of early differentiating spermatogonia with DNA damage proved to have an important role for regulation of overall mutation rate in male germ cells. In contrast mutation rate in female germ cells appeared to depend on fidelity of DNA repair. Next we found that spontaneous chromosomal breakages. and deletions are frequently caused in female germ cells of the Niigata wild population. Detailed analyses suggested that a novel mechanism for genome arrangement is involved in induction of germ-cell mutations in the wild populations of the Medaka Furthermore, we analysed the spectrum of spontaneous mutations by identifying spontaneous body-colour mutants. We positionally cloned responsible genes for the b, ci and i-3 mutants and identified they are caused by inversion, duplication or deletion of from several to dozens of nucleotides. Though others reported only insertions of transposon-like elements as a cause of spontaneous mutations on medaka genes (i, el, and rs-3), it is proved that that is not only the case. Meanwhile, because we isolated three pigmentation genes (functions of two of them are newly revealed by this study), we could provide new insights for developmental and evolutional studies of pigment cells.

  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Naruse K.: "A Detailed Linkage Map of Medaka, Oryzias latipes. Comparative genomics and genome evolution."Genetics.. 154. 1773-1784 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kondo S: "The medaka rs-3 locus required for scale development encodes ectodysplasin-A receptor."Current Biology. 11. 1202-1206 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kondo M.: "Differences in recombination frequencies during female and male meioses of the sex chromosomes of the medaka, Oryzias latipes."Genet.Research. 78. 23-30 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Okubo K.: "Identification and Characterization of Two Distinct GnRH Receptor Subtypes in a Teleost, the Medaka Orvzias latipes."Endocrinology. 142. 4729-4739 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shimada, A.: "High incidence of mosaic mutations induced by irradiating paternal germ cells of the medaka fish, Oryzias latipes."Mutation Research. 495. 33-42 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Fukamachi, S.: "Genomic analysis of gamma-ray-induced germ-cell mutations at the b locus recovered from the medaka specific-locus test."Mutati on Res earth. 458. 19-29 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Fukamachi, S.: "Mutations in the gene encoding B, a novel transporter protein, reduce melanin content in medaka."Nature Genetics. 28. 381-385 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kuwahara, Y.: "A critical stage in spermatogenesis for radiation-induced cell death in the medaka fish, Oryzias latipes"Radiation Research. 157. 386-392 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nakayama, K.: "Distinctive distribution of AIMl polymorphism among major human populations with different skin color."Journal of Human Genetics. 47. 92-94 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shimada, A.: "Induction and characterization of mutations at the b locus of the medaka, Oryzias latipes."Zoological Science. 19. 411-417 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Wittbrodt, J.: "Medaka - A model organism from the Far East."Nature Reviews Genetics. 3. 53-64 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shima, A.: "Fish genomes flying - Symposium on Medaka genomics."EMBO reports. 4. 121-125 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Aizawa, K.: "The medaka midblastula transition as revealed by the expression of the paternal genome."Gene Expression Patterns. 3. 43-47 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kuwahara, Y.: "Gamma-ray exposure accelerates spermatogenesis of medaka fish, Oryzias latipes."Molecular Reproduction and Development. 65. 204-211 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Naruse K., Fukamachi S., Mitani H., Kondo M., Matsuoka T., Kondo S., Hanamura N., Moritia Y., Hasegawa K., Nishigaki R., Shimada A., Wada H., Kusakabe T., Suzuki N., Kinoshita M., Kanamori A., Terado T., Kimura H., Nonaka M., Shima A.: "A Detailed Linkage Map of Medaka, Oryzias latipes. Comparative genomics and genome evolution."Geneti cs.. 154. 1773-1784 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kondo S, Kuwahara Y., Kondo M., Naruse K., Mitani H., Wakamatsu Y., Ozato K., Asakawa S., Shimizu N., Shima, A.: "The medaka rs-3 locus required for scale development encodes ectodysplasin-a receptor."Current Biology. 11. 1202-1206 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kondo M., Nagao E., Mitani H., Shima A.: "Differences in recombination frequencies during female and male meioses of the sex chromosomes of the medaka, Oryzias latipes."Genet. Res.. 78. 23-30 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Okubo K., Nagata S., Ko R., Kataoka H., Yoshiura Y., Mitani, H., Kondo M., Naruse K., Shima A., Aida, K.: "Identification and Characterization of Two Distinct GnRH Receptor Subtypes in a Teleost, the Medaka Oryzias latipes."Endocrinology. 142. 4729-4739 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shimada, A., Shima, A.: "High incidence of mosaic mutations induced by irradiating paternal germ cells of the medaka fish, Oryzias latipes."Mutation Research. 495. 33-42 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Fukamachi, S.Shimada, A., Naruse, K., Shima A.: "Genomic analysis of gamma-ray-induced germ-cell mutations at the b locus recovered from the medaka specific-locus test."Mutation Research. 458. 19-29 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Fukamachi, S., Shimada, A., Shima, A.: "Mutations in the gene encoding B, a novel transporter protein, reduce melanin content in medaka."Nature Genetics. 28. 381-385 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kuwahara Y., Shimada, A., Mitani, H., Shima, A.: "A critical stage in spermatogenesis for radiation-induced cell death in the medaka fish, Oryzias latipes."Radiation Research. 157. 386-392 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nakayama, K., Fukamachi, S., Kimura, H., Koda, Y., Soemantri, A., Ishida, T.: "Distinctive distribution of AIM1 polymorphism among major human populations with different skin color."Journal of Human Genetics. 47. 92-94 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shimada, A., Fukamachi, S., Wakamatsu, Y., Ozato, K., Shima, A.: "Induction and characterization of mutations at the b locus of the medaka, Oryzias latipes."Zoological Science. 19. 411-417 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wittbrodt, J., Shima, A., Schartl, M.Medaka: "A model organism from the Far East."Nature Reviews Genetics. 3. 53-64 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shima, A., Himmelbauer, H., Mitani, H., Furutani-Seiki, M., Wittbrodt, J., Schartl, M.: "Fish genomes flying-Sympsoium on Medaka genomics."EMBO reports. 4. 121-125 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Aizawa, K., Shimada, A., Naruse, K., Mitani, H., Shima, A.: "The medaka midblastula transition as revealed by the expression of the paternal genome."Gene Expression Patterns. 3. 43-47 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kuwahara, Y., Shimada, A., Mitani, H., Shima, A.: "Gamma-ray exposure accelerates spermatogenesis of medaka fish, Oryzias"Molecular Reproduction and Development. 65. 204-211 (2003)

    • Description
      「研究成果報告書概要(欧文)」より

URL: 

Published: 2005-04-19  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi