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2001 Fiscal Year Final Research Report Summary

Structural Biological Study of Ion Channel Blockers and Development of Drug Design

Research Project

Project/Area Number 11307053
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionThe University of Tokyo

Principal Investigator

SHIMADA Ichio  Graduate School of Pharmaceutical sciences, The University of Tokyo, Professor, 大学院・薬学研究科, 教授 (70196476)

Project Period (FY) 1999 – 2001
KeywordsNuclear Magnetic Resonance / Structural Biology / Ion Channel / Gating Modifier / Drug Design
Research Abstract

ω-Grammotoxin SlA (GrTx) is a 36 amino acid residue protein toxin from spider venom that inhibits P/Q and N type voltage-gated Ca^<2+> channels by modifying voltage-dependent gating. We determined the three-dimensional structure of GrTx using NMR spectroscopy. The toxin adopts an 'inhibitor cystine knot' motif composed of two β-strands (Leu19 - Cys21 and Cys30 - Trp32) and a β-bulge (Trp6, Gry7 - Cys30) with a +2x, 1 topology, which are connected by four chain reversals. Although GrTx was originally identified as an inhibitor of voltage-gated Ca^<2+> channel, it also binds to K^+ channels with lower affinity. A similar cross-reaction was observed for HaTx, which binds to the voltage-sensing domains of K^+ and Ca^<2+> channels with different affinities. A detailed comparison of the GrTx and HaTx structures identifies a well-conserved face containing a large hydrophobic patch surrounded by positively charged residues. The slight differences in the surface shape, which result from the orientation of the surface aromatic residues and/or the distribution of the charged residues, may explain differences in the binding affinity of these gating modifiers with different voltage-gated ion channels.

  • Research Products

    (46 results)

All Other

All Publications (46 results)

  • [Publications] Hiroyuki Kobayashi: "Probing the Interaction between a High-Affinity Single-Chain Fv and a Pyrimidine (6-4) Pyrimidone Photodimer by Site-Directed Mutagenesis"Biochemistry. 38. 532-539 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takuya Torizawa: "Conformational Multiplicity of the Antibody Combining Site of a Monoclonal Antibody Specific for a (6-4) Photoproduct"J. Mol. Biol.. 290. 731-740 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shunro Kawaminami: "A Multinuclear NMR Study of the Active Site of an Endoglucanase from a Strain of Bacillus-Use of Trp Residues as Structural Probes"J. Biol. Chem.. 274. 19823-19828 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Masayoshi Nakasako: "The pH-dependent structural variation of complementarily-determining region H3 and the association mode of variable domains in Fy fragment from an anti-d"J. Mol. Biol.. 291. 117-134 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshiki Yamaguchi: "Development of a Systematic Method for ^<13>C Labeling of IgG Carbohydrate Chains for NMR Study"Glycocojugate J.. 16. 8 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Noriko Takahashi: "N-glycan structure of a recombinant mouse soluble Fc receptor II"Glycocojugate J.. 16. 114 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Katsuyoshi Masuda: "Post-translational modifications of immunoglobulin G : A mouse IgG variant that lacks the entire CH1 domain"Molecular Immunology. 36. 993-1003 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hideo Takahashi: "Solution Structure of Hanatoxin 1, Gating Modifier of Drk1 Potassium Channel"Peptide Science. 83-86 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Koh Takeuchi: "Three-dimensional Solution Structure of Calcium Channel Activator : Imperatoxin A Detrermined by NMR Spectroscopy"Peptide Science. 83-86 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato K.: "Chemical synthesis and properties of (6-4) photoproduct and its analogs"Nucleic Acids Symposium Series. 42. 37-38 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Noriko Takahashi: "N-Glycan structure of murine hippocampus serine protease, neuropsin, produced in Trichoplusia ni cells"Glycoconjugate J.. 16. 405-414 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Koichi Kato: "Structural Basis of the Interaction between IgG and Fc Receptors"J. Mol. Biol.. 295. 213-224 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takuya Torizawa: "DNA-binding mode of the Fab fragment of a monoclonal antibody specific for cyclobutane thymine dimer"Nucleic Acids Res.. 28. 944-951 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hideo Takahashi: "A Novel NMR Method for the Determination of the Interface of Large Protein-protein Complexes"Nature Struct. Biol.. 7. 220-223 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kousuke Sato: "Efficient chemical synthesis of a pyrimidine (6-4) pyrimidone photoproduct analog and its properties"Tetrahedron Lett.. 41. 2175-2179 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hideo Takahashi: "Solution structure of hanatoxin1, a gating modifier of voltage-dependent K^+ channels : common surface features of gating modifier toxins"J. Mol. Biol.. 297. 771-780 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kazuyasu Shindo: "Backbone ^1H, ^<13>C and ^<15>N resonance assignments of the anti-dansyl antibody Fv fragment"J. Biomol. NMR. 17. 357-358 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] lchio Shimada: "NMR Analysis for Interactions Between Bio-Macromolecules Real-Time Analysis of Biomolecular Interactions"(K.Nagata and H.Handa, ed.). 223-231 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Katsuyoshi Masuda: "Pairing of oligosaccharides in the Fc region of immunoglobulin G"FEBS Lett.. 473. 349-357 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshiki Yamaguchi: "^1H and ^<13>C NMR assignments for the glycans in glycoproteins by using ^2H/^<13>C-labeled glucose as a metabolic precursor"J. Biomol. NMR. 18. 357-360 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kazuyasu Shindo: "Solution Structure of Micelle-bound H5 Peptide (427-452) : A Primary Structure Corresponding to the Pore-Forming Region of the Voltage Dependent Potassium"Biochim. Biophys. Acta.. 1545. 153-159 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tomohisa Aoyama: "Identification and characterization of an antibacterial peptide in the 26-Kda protease of Sarcophaga peregrina having antibacterial activity"J. Biochem.. 130. 313-318 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tamiji Nakanishi: "Determination of the Interface of a Large Protein Complex by Transferred Cross-saturation Measurements"J. Mol. Biol.. (in press).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hiroyuki Kobayashi, Hiroshi Morioka, Kunihiro Tobisawa, Takuya Torizawa, Koich Kato, Ichio Shimada, Osamu Nikaido, Jon D. Stewart and Eiko Ohtsuka: "Probing the Interaction between a High-Affinity Single-Chain Fv and a Pyrimidine (6-4) Pyrimidone Photodimer by Site-Directed Mutagenesis"Biochemistry. 38. 532-539 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takuya Torizawa, Koichi Kato, Jiro Kato, Hiroyuki Kobayashi, Yasuo Komatsu, Hiroshi Morioka, Osamu Nikaido, Eiko Ohtsuka and Ichio Shimada: "Conformational Multiplicity of the Antibody Combining Site of a Monoclonal Antibody Specific for a (6-4) Photoproduct"J. Mol. Biol.. 290. 731-740 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shunro Kawaminami, Hideo Takahashi, Susumu Ito, Yoji Arata, and Ichio Shimada: "A Multinuclear NMR Study of the Active Site of an Endoglucanase from a Strain of Bacillus: Use of Trp Residues as Structural Probes"J. Biol. Chem.. 274. 19823-19828 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Masayoshi Nakasako, Hideo Takahashi, Nobuhisa Shimba, Ichio Shimada and Yoji Arata: "The pH-dependent structural variation of complementarity-determining region H3 and the association mode of variable domains in Fv fragment from an anti-dansyl monoclonal antibody, IgG2a(s)"J. Mol. Biol.. 291. 117-134 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshiki Yamaguchi, Koichi Kato, Mitsuru Shindo, Shin Aokil, Kumiko Furusho, Kenji Koga, Noriko Takahashi, Yoji Arata and Ichio Shimada: "Developmentof a Systematic Method for^<13>C Labeling of IgG Carbohydrate Chains for NMR Study"Glycocojugate J.. 16. 8 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Noriko Takahashi, Wakako Yamada, Katsuyoshi Masuda, Hiroko Araki, Yoshinori Tsukamoto, Annie Galinha, Catherine Ssutes, Koich Kato, Ichio Shimada: "N-glycan structure of a recombinant mouse soluble Fc receptor II"Glycocojugate J.. 16. 114 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Katsuyoshi Masuda, Yoshiki Yamaguchi, Koichi Kato, HaHyung Kim, Noriko Takahashi, Ichio Shimada and Yoji Arata: "Posl-translational modifications of immunoglobulin G: A mouse IgG variant that lacks the entire CHl domain"Molecular Immunology. 36. 993-1003 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] HidcoTakahashi, Jae II Kim, Kazuki Sato, Kenton J. Swartz, and Ichio Shimada: "Solution Structure of Hanatoxin l, Gating Mndifier of Drk l Potassium Channel"Peptide Science. 83-86 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Koh Takeuchi, Jae II Kim, HideoTakahashi, Kazuki Sato, and Ichio Shimada: "Three-dimensional Solution Structure of Calcium Channel Activator: Imperatoxin A Determined by NMR Spectroscopy"Peptide Science. 83-86 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato K., Komatsu Y., Torizawa T., Kato K., Shimada I., Ohtsuka E.: "Chemical synthesis and properties of (6-4) photoproduct and its analogs"Nucleic Acids Symposium Series. (42). 37-8 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Noriko Tkahashi, Y. Tsukamoto, S. Shiosaki, Toshio Hakoshima, Yoji Arata, Yoshiki Yamaguchi, Koichi Kato and Ichio Shimada: "N-Glycan structure of murine hippocampus serine protease, neuropsin, produced in Trichoplusia ni cells"Glycoconjugate J. 16. 405-414 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Koichi Kato, Catherine Sautes-Fridman, Wakako Yamada,. Junichi Enokizono, Yuii Kobavashi, Yoji Arata, and Ichio Shimada: "Struetural Basis of the Interaction between IgG and Fc Receptors"J. Mol. Biol.. 295. 213-224 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takuya Torizawa, Nobuhiro Yamamoto, Tomonori Suzuki, Kaoru Nobuoka, Yasuo Komatsu, Hiroshi Morioka, Osamu Nikaido, Eiko Ohtsuka, Koichi Kato, and Ichio Shimada: "DNA-binding mode of the Fab fragment of a monoclonal antibody specific for cyclobutane thymine dimer"Nucleic Acid Res. 28. 944-951 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hideo Takahashi, Tamiji Nakanishi, Keiichiro Kami, Yoji Arata and Ichio Shimada: "A Novel NMR Method for the Determination of the Interface of Large Protein-protein Complexes"Nature Struct. Biol.. 7. 220-223 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kousuke Sato, Yasuo Komatsu, Takuya Torizawa, Koichi Kato, Ichio Shimada, Osamu Nikaido and Eiko Ohtsuka: "Efficient chemical synthesis of a pyrimidine (6-4) pyrimidone photoproduct analog and its properties"Tetrahedron Lett.. 41. 2175-2179 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] HideoTakahashi, Jae II Kim, Hye Jung Min, Kazuki Sato, Kenton J. Swartz, and Ichio Shimada: "Solution structure of hanatoxin l, a gating modifier of voltage-dependent K^+ channels: common surface features of gating modifier toxins"J. Mol. Biol.. 297. 771-780 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kazuyasu Shindo, Katsyoshi Masuda, Hideo Takahashi, Yoji Arata, and Ichio Shimada: "Backbone ^1H, ^<13>C, and ^<15>N resonance assignments of the anti-dansyl antibody Fv fragment"J. Biomol. NMR. 17. 357-358 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ichio Shimada: "NMR Analysis for Interactions Between Bio-Macromolecules"Real-Time Analysis of Biomolecular Interactions (K.Nagata and H. Handa, ed.). 223-231 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Katsuyoshi Masuda, Yoshiki Yamaguchi, Koichi Kato, Noriko Takahashi, Ichio Shimada, and Yoji Arata: "Pairing of oligosaccharides in the Fc region of immunoglobulin G"FEBS Lett.. 473. 349-357 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshiki Yamaguchi, Takeshi Takizawa, Koichi Kato, Yoji Arata, and Ichio Shimada: "^1H and ^<13>C NMR assignments for the glycans in glycoproteins by using ^2H/^<13>C-labeled glucose as a metabolic precursor"J. Biomol. NMR. 18. 357-360 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kazuyasu Shindo, Kohki Shinozaki, Keiichiro Kami, Kazunori Anzai, Sannamu Lee, Haruhiko Aoyagi, Yutaka Kirino, and Ichio Shimada: "Solution Structure of Micelle-bound H5 Peptid (427-452): A Primary Structure Corresponding to the Pore-Forming Region of the Voltage Dependent Potassium Channel"Biochem. Biophys. Acta. 1545. 153-159 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tomohisa Aoyama, Yumiko Tsuji, kou Takeuchi, Ko-ichi Homma, Hideo Takahashi, Yuki Nakajima, Ichio Shimada and Shunji Natori: "Identification and characterization of an antibacterial peptide in the 26-Kda protease of Sarcophaga peregrina having antibacterial activity"J. Biochem.. 130. 313-318 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tamiji Nakanishi, Mayumi Miyazawa, Masayoshi Sakakura, Hiroaki Terasawa, Hideo Takahashi, and Ichio Shimada: "Determination of the Interface of a Large Protein Complex by Transferred Cross-saturation Measurements"J. Mol. Biol.. (In press).

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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