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2001 Fiscal Year Final Research Report Summary

STudies on subceptibility genes to autoimmune diseases using genomic approach

Research Project

Project/Area Number 11470505
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Human genetics
Research InstitutionThe University of Tokyo

Principal Investigator

TSUCHIYA Naoyuki  Graduate School of Medicine, The University of Tokyo, Associate Professor, 大学院・医学系研究科, 助教授 (60231437)

Co-Investigator(Kenkyū-buntansha) OHASHI Jun  Graduate School of Medicine, The University of Tokyo, Assistant Professor, 大学院・医学系研究科, 助手 (80301141)
YAMAGUCHI Akihiro  Faculty of Medicine Hospital, The University of Tokyo, Assistant Professor, 医学部・附属病院, 助手 (90261974)
HOHJOH Hirohko  Graduate School of Medicine, The University of Tokyo, Assistant Professor, 大学院・医学系研究科, 助手 (60238722)
HONDA Zenichiro  Facultyl of Medicine Hospital, The University of Tokyo, Lecturer, 医学部・附属病院, 講師 (70238814)
Project Period (FY) 1999 – 2001
Keywordssystemic lupus ervthematosus / rheumatoid arthritis / Crohn's disease / plymorphism / expression / Fcy receptor IIb / TNFR2 / Id
Research Abstract

The gain insight into the genetic background of rheumatoid arthritis (RA), systemic lupus erythematosus (SLE) and Crohn's disease, two lines of studies were conducted. First, genomic polymorphisms were screened for candidate genes such as TNFR2, FCCR2B, CD28, CTLA-4, CD80, CD86, CD22, SHP-1, CCR3, CCR4, CXCR1, CXCR2, CXCR3, BLYS, BCMA, OX40L, NKG2A, NKG2C, CD94, IKKA, and associations of the polymorphisms with the diseases were examined. Already known polymorphisms of HLA-DRB1, TNF, FCGR2A, FCGR3A, FCGR3B were genotyped in parallel. A number of new polymorphisms were detected. Significant association with SLE was detected in TNFR2-196R, both of FCGR2B-232T and FCGR3A-176F, CD19 GT repeat polymorphism in 3 untranslated region, for the first time. In addition, HLA-DRB1 *0405 and TNFα-1031C, -863A, -857C haplotype were both found to be associated with Crohn's disease. Furthermore, some alleles were suggested to be associated with disease in combination with alleles of other genes and also some polymorphisms were shown to have functional changes.
The second approach was the expression profiling. Using differential display, 19 gene fragments were found to be preferentially expressed in RA synovia as compared with osteoarthritis, among which Id family genes were considered to be particularly relevant to the pathogenesis of RA. Immunohistochemical staining indicated the localization of Id proteins in endothlial cells, suggesting its role in angiogenesis. In Crohn's disease, genes of particular interest in terms of functions, such as FLIP and TNIK, were found to be upregulated in the inflammatory tissues.
Collectively, both approaches provide a number of important clues to elucidate the genetic background of RA, SLE and Crohn's disease.

  • Research Products

    (51 results)

All Other

All Publications (51 results)

  • [Publications] Hatta Y, et al.: "Identification of the gene variations in human CD22"Immunogenetics. 49. 280-286 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Matsushita M, et al.: "New variations of human SHP-1"Immunogenetics. 49. 577-579 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Komata T et al.: "Association of tumor necrosis factor receptor 2 (TNFR2) polymorphism with susceptibility to systemic lupus erythematosus"Tissue Antigens. 53. 527-533 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hatta Y et al.: "Association of Fcγ receptor IIIB, but not of Fcγ receptor IIA and IIIA polymorphisms with systemic lupus erythematosus in Japanese"Genes Immun. 1. 53-60 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Matsushita M et al.: "Allele typing of human TNFA 5'-flanking region using PCR-PHFA (preferential homoduplex formation assay)"Tissue Antigens. 54. 478-484 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kato H et al.: "New variations of human β-chemokine receptors CCR3 and CCR4"

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Matsushita M et al.: "Lack of a strong association of CTLA-4 exon 1 polymorphism with the susceptibility to rheumatoid arthritis and systemic lupus erythematosus in Japanese:"Tissue Antigens. 54. 578-584 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hagiwara K et al.: "Identification of the gene variations in human IKKα"Immunogenetics. 50. 363-365 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shibue T et al.: "Tumor necrosis factor α 5'-flanking region, TNF receptor II and HLA-DRB1 polymorphisms in the Japanese patients with rheumatoid arthritis"Arthritis Rheum.. 43. 753-757 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kato H et al.: "Single nucleotide polymorphisms in the coding regions of human CXC-chemokine receptors CXCR1, CXCR2, and CXCR3"Genes Immun. 1. 330-337 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawasaki A et al.: "Independent contribution of HLA-DRB1 and TNFα promoter polymorphisms to the susceptibility to Crohn's disease"Genes Immun. 1. 351-357 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Matsushita M et al.: "Lack of association with rheumatoid arthritis and systemic lupus erythematosus"Genes Immun. 1. 428-434 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tsuchiya N et al.: "New single nucleotide polymorphisms in the coding region of human TNFR2"Genes Immun. 1. 501-503 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hikami K et al.: "New variations in human OX40 ligand (CD134L) gene"Genes Immun. 1. 521-522 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ohashi J et al.: "Comparison of statistical power between 2 x 2 allele frequency and allele positivity tables in case-control studies of complex disease genes"Ann Hum Genet. 65. 197-206 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hagiwara K et al.: "Identification of genes differentially expressed in the inflamed colonic lesions of Crohn's disease"Biochem Biophys Res Commun. 283. 130-135 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sakurai D et al.: "Expression of ID family genes in the synovia from patients with rheumatoid arthritis"Biochem Biophys Res Commun. 284. 436-442 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawasaki A: "Presence of four major haplotypes in human BCMA gene : Lack of association with systemic lupus erythematosus and rheumatoid arthritis"Genes Immun. 2. 276-279 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tsuchiya N et al.: "Analysis of the association of HLA-DRB1 and TNFA promoter polymorphisms with SLE using transmission disequilibrium test"Genes Immun. 2. 317-322 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Miyamasu M et al.: "Variations in the human CC chemokine eotaxin gene"Genes Immun. 2. 461-463 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato M et al.: "Identification of novel single nucleotide substitutions in the NKp30 gene expressed in human natural killer cells"Tissue Antigens. 58. 255-258 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sirikong M et al.: "Association of HLA-DRB1^*1502 -DQB1^*0501 haplotype with susceptibility to systemic lupus erythematosus in Thais"Tissue Antigens. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kyogoku C et al.: "Association of Fcγ receptor gene polymorphisms in Japanese patients with systemic lupus erythematosus : Contribution of FCGR2B to the genetic susceptibility to SLE"Arthritis Rheum. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hatta Y, Tsuchiya N, Matsushita M, Shiota M, Hagiwara Y, Tokunaga K: "Identification of the gene variations in human CD22"Immunogenetics. 49. 280-286 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Komata T, Tsuchiya N, Hatta Y, Matsushita M, Ogawa A, Mitsui H, Tokunaga K: "HLA-DRB1 alleles encoding the shared epitope associated with rheumatoid arthritis confer additional susceptibility to seronegative spondyloarthropathies in HLA-B27 positive Japanese individuals"Jpn. J. Rheumatol. 9. 55-64 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Matsushita M, Tsuchiya N, Oka T. Yamane A, Tokunaga K: "New variations of human SHP-1"Immunogenetics. 49. 577-579 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Komatsu Wakui M, Tokunaga K, Ishikawa Y, Kashiwase K, Moriyama S, Tsuchiya N, Ando H, Shiina T, Geraghty DE, Inoko H, Juji T: "Polymorphism of MICA in Japanese and a MICA-MICB null haplotype"Immunogenetics. 49. 620-628 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Konno Y, Numaga J, Tsuchiya N, Ogawa A, Islam SMM, Mochizuki M, Mitsui H, Oda H, Maeda H: "HLA-B27 subtypes and HLA class II alleles in Japanese patients with anterior uveitis"Invest. Ophthal. Vis. Sci. 40. 1838-1844 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Komata T, Tsuchiya N, Matsushita M, Hagiwara K, Tokunaga K: "Association of tumor necrosis factor receptor 2 (TNFR2) polymorphism with susceptibility to systemic lupus erythematosus"Tissue Antigens. 53. 527-533 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hatta Y, Tsuchiya N, Ohashi J, Matsushita M, Fujiwara K, Hagiwara K, Juji T, Tokunaga K: "Association of Fcγ receptor IIIB, but not of Fcγ receptor IIA and IIIA, polymorphisms with systemic lupus erythematosus in Japanese"Genes Immun.. 1. 53-60 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Matsushita M, Tsuchiya N, Nakayama T, Ohashi J, Shibue T, Shiota M, Yamane A, Tokunaga K: "Allele typing of human TNFA 5 flanking region using PCR-PHFA (preferential homoduplex formatio assay) : linkage disequilibrium with HLA class I and class II in Japanese"Tissue Antigens. 54. 478-484 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kato H, Tsuchiya N, Izumi S, Miyamasu M, Nakajima T, Kawasaki H, Hirai K, Tokunaga K: "New variations of human β-chemokine receptors CCR3 and CCR4"Genes Immun.. 1. 97-104 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Matsushita M, Tsuchiya N, Shiota M, Komata T, Matsuta M, Zama K, Oka T, Juji T, Yamane A, Tokunaga K: "Lack of a strong association of CTLA-4 exon 1 polymorphism with the susceptibility to rheumatoid arthritis and systemic lupus erythematosus in Japanese. An association study using a novel variation screening method"Tissue Antigens. 54. 578-584 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hagiwara K, Tsuchiya N, Takazoe M, Yamamoto K, Tokunaga K: "Identification of the gene variations in human IKKα"Immunogenetics. 50. 363-365 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shibue T, Tsuchiya N, Komata T, Matsushita M, Shiota M, Ohashi J, Wakui M, Matsuta K, Tokunaga K: "Tumor necrosis factor α 5'-franking region, TNF receptor II and HLA-DRB1 polymorphisms in the Japanese patients with rheumatoid arthritis"Arthritis Rheum. 43. 753-757 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kato H, Tsuchiya N, Tokunaga K: "Single nucleotide polymorphisms in the coding regions of human CXC-chemokine receptors CXCR1, CXCR2, and CXCR3"Genes Immun.. 1. 330-337 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kawasaki A, Tsuchiya N, Hagiwara K, Takaze M, Tokunaga K: "Independent contribution of HLA-DRB1 and TNFα promoter polymorphisms to the susceptibility to Crohn's disease"Genes Immun.. 1. 351-357 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Matsushita M, Tsuchiya N, Oka T, Yamane A, Tokunaga K: "New polymorphisms of huma CD80 and CD86. Lack of association with rheumatoid arthritis and systemic lupus erythematosus"Genes Immun.. 1. 428-434 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tsuchiya N, Komata T, Matsushita M, Ohashi J, Tokunaga K: "New single nucleotide polymorphisms in the coding region of human TNFR2"Genes Immun.. 1. 501-503 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hikami K, Tsuchiya N, Tokunaga K: "New variations in human OX40 ligand (CD134L) gene"Genes Immun. 1. 521-522 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ohashi J, Yamamoto S, Tsuchiya N, Hatta Y, Komata T, Matsushita M, Tokunaga K: "Comparison of statistical power between 2 x 2 allele frequency and allele positivity tables in case-control studies of complex disease genes"Ann Hum Genet. 65. 197-206 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Mitsui H, Tsuchiya N, Okinaga S, Matsuta K, Yoshimura K, Nishimura A: "Expression of membrane-type metalloproteinases in synoial tissues from patients with rheumatoid arthritis or osteoarthritis"Mod Rheumatol. 11. 34-39 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Wakui M, Yamaguchi A, Sakurai D, Ogasawara K, Yokochi T, Tsuchiya N, Ikeda Y, Tokunaga K: "Upregulated genes in the early phase of murine graft-versus-host reaction"Biochem Biophys Res Commun. 282. 200-206 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hagiwara K, Yamaguchi A, Tsuchiya N, Kitamura S, Iwadare J, Sahara R, Yamamoto K, Tokunaga K: "Identification of genes differentially expressed in the inflamed colonic lesions of Crohn's disease"Biochem Biophys Res Commun. 283. 130-135 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sakurai D, Yamaguchi A, Tsuchiya N, Yamamoto K, Tokunaga K: "Expression of ID family genes in the synovia from patients with rheumatoid arthritis"Biochem Biophys Res Commun. 284. 436-442 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kawasaki A, Tsuchiya N, Fukuzawa T, Hashimoto H, Tokunaga K: "Presence of four major haplotypes in human BCMA gene : Lack of association with systemic lupus erythematosus and rheumatoid arthritis"Genes Immun. 2. 276-279 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tsuchiya N, Kawasaki A, Tsao BP, Komata T, Grossman JM, Tokunaga K: "Analysis of the association of HLA-DRB1 and TNFA promoter polymorphisms with SLE using transmission disequilibrium test"Genes Immun. 2. 317-322 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Miyamasu M, Sekiya T, Ohta K, Ra C, Yoshie O, Yamamoto K, Tsuchiya N, Tokunaga K, Hirai K: "Variations in the human CC chemokine eotaxin gene"Genes Immun. 2. 461-463 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato M, Ohashi J, Tsuchiya N, Tadokoro K, Juji T, Hanaoka K, Tokunaga K, Yabe T: "Identification of novel single nucleotide substitutions in the NKp30 gene expressed in human natural killer cells"Tissue Antigens. 58. 255-258 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sirikong M, Tsuchiya N, Chandanayingyong D, Bejrachandra S, Siriboonrit U, Tokunaga K: "Association of HLA-DRB1*1502-DQB1*0501 haplotype with susceptibility to systemic lupus erythematosus in Thais"Tissue Antigens. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kyogoku C, Dijstelbloem HM, Tsuchiya N, Hatta Y, Kato H, Yamaguchi A, Fukuzawa T, Jansen MD, Hashimoto H, van de Winkel JGJ, Kallenberg CGM, Tokunaga K: "Association of Fcγ receptor gene polymorphisms in Japanese patients with systemic lupus erythematosus : Contribution of FCGR2B to the genetic susceptibility to SLE"Arthritis Rheum. (in press).

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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