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2001 Fiscal Year Final Research Report Summary

Functional Analysis of Group2 Sigma factors of cyanobalcteria based on genome information

Research Project

Project/Area Number 11480197
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionThe University of Tokyo

Principal Investigator

TANAKA Kan  Institute of Molecular and Cellular Biosciences, The University of Toyo, Associate Professor, 分子細胞生物学研究所, 助教授 (60222113)

Co-Investigator(Kenkyū-buntansha) SHIRAI Makoto  Ibaraki University, School of Agriculture, Professor, 農学部, 教授 (10007792)
Project Period (FY) 1999 – 2001
Keywordstranscription / RNA polymerase / sigma fctor / cyanobacteria / nitrogen regulation / stress response
Research Abstract

The genome sequence of the unicellular cyanobacterium Synechocystis sp. PCC 6803 was deteremined by Kazusa DNA Institute several years ago, and the presence of four group 2 sigma factors (SigB, SigC, SigD and SigF) has been clarified. Since each of these sigrna factors are well conserved among divergent cyanobacteria, respective function for each sigma appears to be well established in cyanobacteria. In this study, we first studied the in vitro specificity of group 2 sigma factors, and found that group 1 and group 2 sigma factors are sigma factors sharing similar promoter recognition specificity. We then performed expression analysis of these sigma factors, and found that :
1. The sigB gene product is induced by heat shock.
2. The sigC function is activated during the stationary growth phase.
3. The sigD expression is enhanced by various stresses such as, low temperature, salt, high osmotic pressure and high light, dependent on a two-component histidinc kinase, Hik33.
4. The sigE expression is largely dependent on the global nitrogen regulator, NtcA, which is activated by depletion of nitrogen sources. We have also found that NtcA-dependent transcription is activated by 2-oxoglutarate in vitro.

  • Research Products

    (13 results)

All Other

All Publications (13 results)

  • [Publications] Goto-Seki, A., Shirokane, M., Matsuda, S., Tanaka, K., Takahashi, H.: "Specificity crosstalk among group1 and group2 sigma factors in the cyanobacterium Synechococcus sp PCC7942"Mol. Microbiol.. 34. 473-484 (1999)

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      「研究成果報告書概要(和文)」より
  • [Publications] Shirano, Y., Simada, H., Tanaka, K., et al.: "Chloroplast development in Arabidopsisthaliana requires the nuclear encoded transcription factor Sigma B."FEBS Lett.. 485. 178-182 (2000)

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      「研究成果報告書概要(和文)」より
  • [Publications] Fujiwara, M., Nagashima, A., Tanaka, K., et al.: "Three new nuclear genes, sigD, sigE and sigF, encoding putative plastid RNA polymerase sigma factors in Arabidopsis thaliana"FEBS Lett.. 481. 47-52 (2000)

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      「研究成果報告書概要(和文)」より
  • [Publications] Agrawal.GK, Kato, H., Asayama, M., Shirai, M.: "An AU-box motif upstream of the SD sequence of light-dependent psbA transcripts confers mRNA instability in darkness in cyanobacteria"Nucleic Acids Res.. 29. 1835-1843 (2001)

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      「研究成果報告書概要(和文)」より
  • [Publications] Kanamaru, K., Tanaka, K., Takahashi, H., et al.: "An Arabidopsis sigma factor (SIG2)-dependent expression of plasmid-encoded tRNAs in chloroplasts"Plant Cell Physicl.. 42. 1034-1043 (2001)

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      「研究成果報告書概要(和文)」より
  • [Publications] Tanigawa, R., Shirokane, M., Maeda, S., Omata, T., T, Tanaka, K., Takahashi, H.: "Transcriptional activation of NtcA-dependent promoters of Synechococcus sp. PCC7942 by 2-oxoglutarate in vitro"Proc. Natl. Acad. Sci. USA. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Asako Goto-Seki, Masao Shirokane, Susumu Masuda, Kan Tanaka, and Hideo Takahashi: "Specificity crosstalk among group 1 and group 2 sigma factors in the cyanobacterium Synechococcus sp. PCC 7942 : in vitro specificity and a phylogenetic analysis"Mol. Microbiol.. 34. 473-484 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kengo Kanamaru, Makoto Fujiwara, Motoaki Seki, Takeshi Katagiri, Masanobu Nakamura, Nobuyoshi Mochizuki, Akira Nagatani, Kazuo Shinozaki, Kan Tanaka, and Hideo Takahashi: "Plastidic RNA polymerase σ factors in Arabidopsis"Plant Cell Physiol.. 40. 832-842 (1999)

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      「研究成果報告書概要(欧文)」より
  • [Publications] Yumiko Shirano, Hiroshi Shimada, Kengo Kanamaru, Makoto Fujiwra, Kan Tanaka, Hideo Takahashi, Kazutoshi Unno, Shusei Sato, Satoshi Tabata, Hiroaki Hayashi, Chikahiro Miyake, Akiho Yokoto, and Daisuke Shibata: "Chioroplast development in Arabidopsis thallana requires the nuclear-encoded transcription factor Sigma B"FEBS Lett.. 485. 178-182 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Makoto Fujiwara, Akimoto Nagashima, Kengo Kanamaru, Kan Tanaka, and Hideo Takahashi: "Three new nuclear genes, sigD, sigE and sigF, encoding putative plastid RNA polymerase sigma factors in Arabidopsis thaliana"FEBS Ltdd.. 481. 47-52 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ganesh K. Agrawal, Hideki Kato, Munehiko Asayama, and Makoto Shirai: "An AU-box motif upstream of the SD sequence of light-dependent psbA transcripts conferes mRNA instability in darkness in cyanobacteria"Nucleic Acids Res.. 29. 1835-1843 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kengo, Kanamaru, Akitomo Nagashima, Makoto Fujiwara, Hiroshi Shimada, Yumiko Shirano, Kazumi Nakabayashi, Daisuke Shibata, Kan Tanaka, and Hideo Takahashi: "An Arabidopsis sigma factor (SIG2)-dependent expression of plastid-encoded tRNAs in chioroplasts"Plant Cell Physiol.. 42. 1034-1043 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ryohei Tanigawa, Masao Shirokane, Shin-ichi Maeda, Tatsuo Omata, Kan Tanaka, and Hideo TAkahashi: "Transcriptional activation of NtcA-dependent promoters of Synechococcus sp. PCC 7942 by 2-oxoglutarate in vitro"Proc. Natl. Acad. Scl. USA. (in press). (2002)

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Published: 2003-09-17  

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