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2001 Fiscal Year Final Research Report Summary

Identification of Gene Function from Sequence Information

Research Project

Project/Area Number 11695085
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Human genetics
Research InstitutionTokyo Medical and Dental University

Principal Investigator

YAMAMURA Yasuko  Tokyo Medical and Dental University, Graduate School, Lecturer, 大学院・医歯学総合研究科, 講師 (50146809)

Co-Investigator(Kenkyū-buntansha) OHTANI Kiyoshi  Tokyo Medical and Dental University, Human Gene Sciences Center, Lecturer, 疾患遺伝子実験センター, 講師 (30201974)
YOSHINAKA Yoshiyuki  Tokyo Medical and Dental University, Human Gene Sciences Center, Associate Professor, 疾患遺伝子実験センター, 助教授 (30024657)
NAKAMURA Masataka  Tokyo Medical and Dental University, Human Gene Sciences Center, Professor, 大学院・医歯学総合研究科, 講師 (30180392)
HARO Hirotaka  Tokyo Medical and Dental University, Graduate School, Research Associate, 大学院・医歯学総合研究科, 助手 (10313264)
Project Period (FY) 1999 – 2001
Keywordssequence information / functional information / gene family / Smad / p51 / Tax / MMP
Research Abstract

Genes that contribute to diseases have been classified, and correlation between gene products and the various features of diseases have been found. However, little is known about the physiological functions of many genes that have been identified using the sequence comparison tools that are available in the genome database. We have attempted to establish methods to gain an insight into the functions of genes from their sequence information by analyzing the functions of members of families of genes involved in signal transduction and transcription.
1. Smad2 and Smad3 are members of the Smad transcription factor family that plays a central role in TGF-β signaling. We found that they exerted distinct biological functions such as apoptosis and G1 arrest, while they shared a considerable homology.
2. We analyzed sequence and functional information of the p51 and p73 genes of the p53 gene family. We found that the p51 gene encoded multiple isotypes like the p73 gene and played a role in limb and epidermal differentiation.
3. We analyzed the ability of mutant Tax genes of the human T-cell leukemia virus type I (HTLV-I) to activate E2F transcription factor, and characterized the Tax gene by the phenotypes of the mutations.
4. Analysis of biological functions and sequence information of the matrix metalloproteinase (MMP) family members, MMP-3 and MMP-7, indicated that MMP-7 induced the release of TNF-α from macrophages to activate the MMP-3 gene.

  • Research Products

    (50 results)

All Other

All Publications (50 results)

  • [Publications] Noriko Funato: "Common regulation of growth arrest and differentiation of osteoblasts by belix-loop-helix factors"Molecular and Cellular Biology. 21. 7416-7428 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ritsuko Iwanaga: "Molecular mechanism of cell cycle progression induced by the oncogene product Tax of HTLV-I"Oncogene. 20. 2055-2067 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yongping Huang: "Direct trans-activation of the human cyclin D2 gene by the oncogene product Tax of HTLV-I"Oncogene. 20. 1094-1102 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshiaki Takahashi: "OX40 stimulation by gp34/OX40 ligand enhances poroductive HIV-1 infection"Journal of Virology. 75. 6748-6757 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kazuyuki Ogawa: "A novel serum protein that selectively produced by cytotoxic lymphocytes"Journal of Immunology. 166. 6404-6412 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hiroyuki Hirai: "Prostaglandin D2 selectively induces chemotaxis in T helper type 2 cells, eosinophils, and basophils via seven-transmembrane receptor CRTH2"Journal of Experimental Medicine. 193. 255-261 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hirotaka Haro: "Matrix metalloproteinase-7 is required for tumor necrosis factor-α release from activated macrophages"Journal of Clinical Investigation. 105. 143-150 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hirotaka Haro: "Chondrocyte matrix metalloproteinase-3 is required for the generation of a macrophage chemoattractant"Journal of Clinical Investigation. 105. 133-141 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shuntaro Ikawa: "p53 family genes : Structural comparison, expression and mutation"Cell Death and Differentiation. 6. 1154-1161 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shuntaro Ikawa: "Human p53-p51 ( p53-related ) fusion protein : a potent BAX transactivator"Japanese Journal of Cancer Research. 90. 596-599 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshiyuki Yoshinaka: "Induction of manganese-superoxide dismutase in MRC-5 cells persistently infected with an Alphavirus, Sindbis"Biochemical and Biophysical Research Communications. 261. 139-143 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ken-ichi Aisaki: "Apoptotic changes precede mitochondraial dysfunction in rod cell type pyruvate kinase mutant mouse erythreleukemia"Japanese Journal of Cancer Research. 90. 171-179 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yasuko Yamamura: "Critical role of Smads and AP-1 complex in transforming growth tactor--dependent apoptosis"Journal of Biological Chemistry. 275. 36295-36302 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tomoko Matsuzaki: "Induction of erythroid differentiation by inhibition Ras/ERK pathway in a Friend murine leukemia cell line"Oncogene. 19. 1500-1508 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Iyoko Katoh: "p51A(TAp63), a p53 homolog, accumulates in response to DNA damage for cell regulation"Oncogene. 19. 3126-3130 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hisaaki Shinohara: "Fas drives cell cycle progression in glioma cells via extracellular signal regulated kinase activation"Cancer Research. 60. 1766-1772 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ritsuko Iwanaga: "Requirement of cell growth for gene expression induced by the lactose and tetracycline repressor-operator combination system in a human T cell line"Biochemical and Biophysical Research Communication. 276. 546-552 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Ohtani: "Cell type-specific E2F activation and cell cycle progression induced by the oncogene product Tax of HTLV-I"Journal of Biological Chemistry. 275. 11154-11163 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Masao Sunahara: "Mutational analysis of p51A/TAp63, a p53 hmolog, in non-small cell lung cancer and breast cancer"Oncogene. 18. 3761-3765 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kinya Nagata: "Selective expression of a novel surface molecule by human Th2 cells in vivo"Journal of Immunology. 162. 1278-1286 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Toshiaki Ohteki: "Interleukin 12-dependent interferon production by CD8 lymphoid dendriic cells"Journl of Experimental Medicine. 189. 1981-1986 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tomonori Tsukahara: "Induction of Bcl-XL expression by HTLV-1 Tax through NF-B in a poptosis-resistant T cell transfeetants with Tax"Journal of Virology. 73. 7981-7987 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Youichi Iwanaga: "HTLV-1 Tax protein abrogates interleukin-2 dependence in a mouse T cell line"Journal of Virology. 73. 1271-1277 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyoshi Ohtani: "Cell growth-regulated expressio of mammalian MCM5 and MCM6 genes mediated by the transcription factor E2F"Oncogene. 18. 2299-2309 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hirotaka Haro: "Up-regulated expression of matrilysin and neutrophil collagenase in human herniated discs"Journal of Spinal Disorders. 12. 245-249 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Noriko Funato: "Common regulation of growth arrest and differentiation of osteoblasts by helix-loop-helix factors"Molecular and Cellular Biology. 21. 7416-7428 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ritsuko Iwanaga: "Molecular mechanism of cell cycle progression induced by the oncogene product Tax of HTLV-I"Oncogene. 20. 2055-2067 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yongping Huang: "Direct trans-activation of die uman cyclin D2 gene by the oncogene product Tax of HTLV-I"Oncogene. 20. 1094-1102 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshiaki Takahashi: "OX40 stimulation by gp34/OX40 ligand enhances productive HTV-1 infection"Journal of Virology. 75. 6748-6757 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kazuyuki Ogawa: "A novel serum protein that is selectively produced by cytotoxic lymphocytes"Journal of Immunology. 166. 6404-6412 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hiroyuki Hirai: "Prostaglandin d2 selectively induces chemotaxis in T helper type 2 cells, eosinophils, and basophils via seven-transmembrane receptor CRTH2"Journal of Experimental Medicine. 193. 255-261 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yasuko Yamamura: "Critical role of Smads and APO-1 complex in transforming growth factor-β-dependent apoptosis"Journal of Biological Chemistry. 275. 36295-36302 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tomoko Matsuzaki: "lnduction of erythroid differentiation by inhibition Ras/ERK pathway in a Friend murine leukemia cell line"Oncogene. 19. 1500-1508 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] lyoko Katoh: "p51A(Tap63γ), a p53 homolog, accumulates in response to DNA damage for cell regulation"Oncogene. 19. 3126-3130 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hisaaki Shinohara: "Fas drives cell cycle progression in glioma cells via extracellular signal-regulated kinase activation"Cance Research. 60. 1766-1772 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ritsuko Iwanaga: "Requirement of cell growth for gene expression induced by the lactose and tetracycline repressoroperator combination system in a human T cell line"Biochemical and Biophysical Research Communications. 276. 546-552 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Ohtani: "Cell type-specific E2F activation and cell cycle progression induced by the oncogene product Tax of HTLV-I"Journal of Biological Chemistry. 275. 11154-11163 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hirotaka Haro: "Matrix metalloproteinase-7 is required for tumor necrosis factor-α release from activated macrophages"Journal of Clinical Investigation. 105. 143-150 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hirotaka Haro: "Chondrocyte matrix metalloproteinase-3 is required for the generation of a macrophage chemo-attractant"Journal of Clinical Investigation. 105. 133-141 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shuntaro Ikawa: "p53 family genes : structural comparison, expression and mutation"Cell Death and Differentiation. 6. 1151-1161 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shuntaro Ikawa: "Human p53-p51 (p53-related) fusion protein : a potent BAX transactivator"Japanese Journal of Cancer Research. 90. 596-599 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshiyuki Yoshinaka: "Induction of manganese-superoxide dismutase in MRC-5 cells persistently infected with an Alphavirus, Sindbis"Biochemical and Biophysical Research Communications. 261. 139-143 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ken-ichi Aisaki: "Apoptotic changes precede mitochondrial dysfunction in red cell type pyruvate kinase mutant mouse erythroleukemia cell lines"Japanese Journal of Cancer Research. 90. 171-179 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Masao Sunahara: "Mutational analysis of p51A/Tap63γ, a p53 homolog, in non-small cell lung cancer and breast cancer"Oncogene. 18. 3761-3765 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kinya Nagata: "Selective expression of a novel surface molecule by human Th2 cells in vivo"Journal of Immunology. 162. 1278-1286 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Toshiaki Ohteki: "Interleukin 12-deopendent interferon γ production by CD8α^+ lymphoid dendric cells"Journal of Experimental Medicine. 189. 1981-1986 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tomonori Tsukahara: "Induction of Bcl-XL expression by HTLV-1 Tax through NF-KB in apoptosis-resistant T cell transfectants with Tax."Journal of Virology. 73. 7981-798 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Youichi Iwanaga: "HTLV- 1 Tax protein abrogates interleukin-2 dependence in a mouse T-cell line"Journal of Virology. 73. 1271-1277 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyoshi Ohtani: "Cell growth-regulated expression of mammalian MCM5 and MCM6 genes mediated by the trascription factor E2F"Oncogene. 18. 2299-2309 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hirotaka Haro: "Up-regulated expression of matrilysin and neutrophil collagenase in hmnan heniiated discs"Journal of Spinal Disorders. 12. 245-249 (1999)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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