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2001 Fiscal Year Final Research Report Summary

Bioremediation of xenobiotic compounds including dioxins

Research Project

Project/Area Number 11794005
Research Category

Grant-in-Aid for University and Society Collaboration

Allocation TypeSingle-year Grants
Research Field 応用微生物学・応用生物化学
Research InstitutionTHE UNIVERSITY OF TOKYO

Principal Investigator

OMORI Toshio  Biotechnology Research Center, The University of Tokyo, Professor, 生物生産工学研究センター, 教授 (20011984)

Co-Investigator(Kenkyū-buntansha) NOJIRI Hideaki  Biotechnology Research Center, The University of Tokyo, Associate Professor, 生物生産工学研究センター, 助教授 (90272468)
NISHIYAMA Makoto  Biotechnology Research Center, The University of Tokyo, Associate Professor, 生物生産工学研究センター, 助教授 (00208240)
YAMANE Hisakazu  Biotechnology Research Center, The University of Tokyo, Professor, 生物生産工学研究センター, 教授 (80090520)
Project Period (FY) 1999 – 2001
KeywordsDioxin / Bioremediation / Bioaugmentation / Gene transfer / Phytoremediation / Monitoring / Transgenic Plants
Research Abstract

[1] Two kinds of bacteria, a dinenzofuran (DF)-degrader Terrabacter sp. strain DBF63 and a carbazole (CAR)-degrader Pseudomonas resinovorans strain CA10, were investigated for their ability to transform several chlorinated DFs and dibenzo-p-dioxins (DDs). It was shown that CAR 1,9a-dioxygenase from strain CA10 catalyzed angular dioxygenation of all mono- to tri-chioro-DF/DDs (CDF/CDDs) investigated in this study, but DF 4,4a-dioxygenase from strain DBF63 did not transform 2,7-diCDD. We also tried a preliminary bioremediation of the actual dioxin-contaminated soil using the soil-slurry system. The decrease of total CDD and CDF congeners by single inoculation with CA10 or DBF63 cells were 8.3 and 10%, respectively, after 7-day incubation, thus it was shown that strains CA10 and DBF63 had a potential to degrade tetra- to hepta-chlorinated congeners including the most toxic compound, 2,3,7,8-tetraCDD.
[2] The fluorogenic probe assay, competitive PCR and co-extraction with internal standard cells were combined to develop a rapid, sensitive, and accurate quantification method for the copy number of a target carAa gene and the cell number of strain CA10. In addition, by using Tn5 transposon, strain CA10 was chromosomally marked with a tandem gfp gene. The real-time competitive PCR and direct counting using the GFP marker were employed to monitor the total number of carAa gene and survival of strain CA10 cells in the soil.
[3] Following plate matings between CAR-degrader strain K23 and phenol-degrader strain DS1 in the presence of CAR, transconjugants able to utilize CAR were obtained. The transconjugants had large plasmid pCAR2.
[4] Transgenic plants expressing DbfB fused to endoplasmic reticulum signal peptide continuously secrete recombinant proteins from their roots into a simple hydroponic medium, and the secreted DbfB proteins retained biological activity.

  • Research Products

    (16 results)

All Other

All Publications (16 results)

  • [Publications] Hiroshi Habe, et al.: "Degradation of Chlorinated Dibenzofurans and Dibenzo-p-dioxins by Two Types of Bacteria Having Angular Dioxygenases with Different Features"Applied and Environmental Microbiology. Vol.67, No.8. 3610-3617 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hiroshi Habe, et al.: "Preliminary Examinations for Applying A Carbazole-Degrader, Pseudomonas sp.Strain CA10, to Dioxin-Contaminated Soil Remediation"Applied Microbiology and Biotechnology. Vol.56, No.5-6. 788-795 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hiroshi Habe, et al.: "Degradation Characteristics of A Dibenzofuran-Degrader Terrabacter sp.Strain DBF63 Toward Chlorinated Dioxins in Soil"Chemosphere. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hiroshi Habe, et al.: "Bioremediation of Dioxin-Contaminated Soils by Different Types of Bacteria"Proceedings of the Sixth International in-Situ and on-Site Bioremediation Symposium. Vol.6, No.6. 111-118 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Jaka Widada, et al.: "Quantification of The Carbazole 1, 9a-Dioxygenase Gene by Real-Time Competitive PCR Combined with Co-extraction of Internal Standards"FEMS Microbiology Letters. Vol.202, No.1. 51-57 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Jaka Widada, et al.: "Enhanced Degradation of Carbazole and 2,3-Dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10"Chemosphere. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Jaka Widada, et al.: "Molecular Detection and Diversity of Polycyclic Aromatic Hydrocarbon-Degrading Bacteria Isolated Geography Diverse Sites"Applied Microbiology and Biotechnology. Vol.58, No.2. 202-209 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hideaki Nojiri, et al.: "Rapid, Sensitive, and Accurate Monitoring Method for Augmented Dioxin-Degrading Bacteria"Proceedings of the Sixth International in-Situ and on-Site Bioremediation Symposium. Vol6, No.4. 51-58 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hiroshi Habe, et al.: "Degradation of Chlorinated Dibenzofurans and Dibenzo-p-dioxins by Two Types of Bacteria Having Angular Dioxygenases with Different Features."Applied and Environmental Microbiology. Vol.67, No.8. 3610-3617 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hiroshi Habe, et al.: "Preliminary Examinations for Applying A Carbazole-Degrader, Pseudomonas sp. Strain CA10, to Dioxin-Contaminated Soil Remediation"Applied Microbiology and Biotechnology. Vol.56, No.5-6. 788-795 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hiroshi Habe, et al.: "Degradation Characteristics of A Dibenzofuran-Degrader Terrabacter sp. Strain DBF63 Toward Chlorinated Dioxins in Soil"Chemosphere. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hiroshi Habe, et al.: "Bioremediation of Dioxin-Contaminated Soils by Different Types of Bacteria"Proceedings of the Sixth International in-Situ and on-Site Bioremediation Symposium. Vol.6, No.6. 111-118 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Jaka Widada, et al.: "Quantification of The Carbazole 1,9a-Dioxygenase Gene by Real-Time Competitive PCR Combined with Co-extraction of Internal Standards"FEMS Microbiology Letters. Vol.202, No.1. 51-57 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Jaka Widada, et al.: "Enhanced Degradation of Carbazole and 2,3-Dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10"Chemosphere. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Jaka Widada, et al.: "Molecular Detection and Diversity of Polycyclic Aromatic Hydrocarbon-Degrading Bacteria Isolated Geography Deverse Sites"Applied Microbiology and Biotechnology. Vol.58, No.2. 202-209 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hideaki Nojiri, et al.: "Rapid, Sensitive, and Accurate Monitoring Method for Augmented Dioxin-Degrading Bacteria"Proceedings of the Sixth International in-Situ and on-Site Bioremediation Symposium. Vol.6, No.4. 51-58 (2001)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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