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2001 Fiscal Year Final Research Report Summary

Mitochondrial genomics of fishes : determination and analysis of complete nucleotide sequence of the mtDNA

Research Project

Project/Area Number 12460083
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field General fisheries
Research InstitutionThe University of Tokyo

Principal Investigator

NISHIDA Mutsumi  The University of Tokyo, Ocean Research Institute, Professor, 海洋研究所, 教授 (90136896)

Co-Investigator(Kenkyū-buntansha) KUMAZAWA Yoshinori  Nagoya University, Graduate School of Science, Lecturer, 大学院・理学研究科, 講師 (60221941)
Project Period (FY) 2000 – 2001
Keywordsfish / mitochondrial genome / mtDNA / nucleotide sequence / molecular phylogenetics / molecular evolution
Research Abstract

Genetic information encoded on the DNA provides important makers for estimating genealogy, population structure, phylogeny, and evolution of organisms. However, it has become apparent that obtaining enough genetic information from the nuclear genome is a rather difficult task because the nuclear genome is a very complex entity in which many genes are duplicated. In this context, preferable is the mitochondrial (mt) genome because of its simplicity. Mitochondrial genomes (and their genes) in "advanced" animals are homologous undoubtedly and are inherited without recombination, and thus they are attractive for phylogenetic and population genetic researches as an important information source. In this project, we determined and compared complete nucleotide sequences of the mt genomes from many fishes representing major lineages of fish, and then tried to estimate comprehensive phylogenetic framework of teleostean fishes on the basis of the resultant large DNA dataset.
Thanks to further development of experimental procedures, equipments, and our research group, we have sequenced complete mt genomes from more than 200 species, which number exceeded ten times as many as what we first aimed to sequence. From the sequence data, various new types of gene arrangement deviated from that of the common vertebrate were found. Phylogenetic analysis of the sequence data also provided many new findings on the relationships among basal teleosts. One of important findings is that the Elopomorpha which includes eels is found to be much more basal in the teleostean phylogeny than assumed previously.

  • Research Products

    (48 results)

All Other

All Publications (48 results)

  • [Publications] Aoyama, Jun: "The European eel, Anguilla anguilla(L.), in Japanese waters"Dana. 12. 1-5 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Iguchi, Kei'ichiro: "Genetic biogeography among insular populations of the amphidromous fish Plecoglossis altivelis assessed from mitochondrial DNA analysis"Conservation Genetics. 1. 147-156 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kumazawa, Yoshinori: "Molecular phylogeny of osteoglossoids : a new model for Gondwanian origin and plate tectonic transportation of the Asian arowana"Molecular Biology and Evolution. 17. 1869-1878 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Miya, Masaki: "Use of mitogenomic information in teleostean molecular phylogenetics : A tree-based exploration under the maximum-parsimony optimality criterion"Molecular Phylogenetics and Evolution. 17. 437-455 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ishikawa, Satoshi: "Gene rearrangement around the control region in the mitochondrial genome of conger eel Conger myriaster"Fisheries Science. 66. 1187-1190 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Inouc, Jun G: "Complete mitochondrial DNA sequence of the Japanese sardine, Sardinops melanostictus"Fisheries Science. 66. 924-932 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Aoyama, Jun: "Discrimination of catadromous eels of genus Anguilla using polymerase chain reaction-restriction fragment length polymorphism analysis of the mitochondrial 16S ribosomal RNA domain"Transactions of the American Fisheries Society. 129. 873-878 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Aoyama, Jun: "Are morphological characters distinctive enough to discriminate between two species of freshwater eels. Anguilla celebesensis and A. interioris?"Ichthyological Research. 47. 157-161 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yamaguchi, Motoomi: "Molecular phylogeny and larval morphological diversity of the lanternfish genus Hygophum (Teleostei : Myctophidae)"Molecular Phylogenetics and Evolution. 15. 103-114 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Miya, Masaki: "Molecular systematics of the deep-sea fish genus Gonostoma (Stomilformes : Gonostomatidae) : two paraphyletic clades and resurrection of Sigmops"Copeia. 2000. 378-389 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Watainabe, Katsutoshi: "Phylogenetic relationships of the Japanese minnows, Pseudorasbora (Cyprinidae), as inferred from mitochondrial 16SrRNA gene sequences"Ichthyological Research. 47. 43-50 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kumazawa, Yoshinori: "Molecular phylogenetic analysis of vertebrate radiations"IIAS Reports, (ed. K.Iwatsuki), International Institute for Advanced Studies, Kyoto. 1999-003. 137-142 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Inoue, Jun G.: "Complete mitochondrial DNA sequence of the Japanese anchovy, Engraulis japonicus"Fisheries Science. 67. 828-835 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Aoyama, Jun: "Molecular phylogeny and evolution of the freshwater eel, gerius Anguilla"Molecular Phylogenetics and Evolution. 20. 450-459 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ishikawa, Satoshi: "Genetic variation in the mitochondrial and nuclear DNA of the Japanese conger Conger myriaster"Fisheries Science. 67. 1081-1087 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Miya, Masaki: "Mitogenomic exploration of higher teleostean phylogenies : a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences"Molecular Biology and Evolution. 18. 1993-2009 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Inoue, Jun G.: "A mitogenomic perspective on the basal teleostean phylogeny : resolving higher-level relationships with longer DNA sequences"Molecular Phylogenetics and Evolution. 20. 275-285 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawaguchi, Akira: "Complete mitochondrial DNA sequence of Aulopus japonicus(Teleostei : Aulopiformes), a basal Eurypterygii : Longer DNA sequences and higher-level relationships"Ichthyological Research. 48. 213-223 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ishiguro, Naoya: "Complete mitochondrial DNA sequence of ayu, Plecoglossus altivelis"Fisheries Science. 67. 474-481 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Inoue, Jun G.: "Complete mitochondrial DNA sequence of Conger myriaster : Novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families"Journal of Molecular Evolution. 52. 311-320 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ishikawa, Satoshi: "Population structure of the Japanese eel Anguilla japonica as examined by mitochondrial DNA sequencing"Fisheries Science. 67. 246-253 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suzuki, Nobuaki: "The phylogenetic position of the genus Atheresthes (Pleuronectidae) and its classification : A molecular phylogenetic approach using mitochondrial sequence data"Bulletin of Faculty of Fisheries Hokkaido University. 52. 39-46 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Inouc, Jun G.: "Complete mitochondrial DNA sequence of Japanese eel, Anguilla japonica"Fisheries Science. 67. 118-125 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Lee, Jae-Song: "The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus and the first description of duplication of a control region in fish"Gene. 280. 1-7 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Aoyama, Jun: "The European eel, Anguilla anguilla (L.), in Japanese waters"Dana. 12. 1-5 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Iguchi, Kei'ichiro: "Genetic biogeography among insular populations of the amphidromous fish Plecoglossus altivelis assessed from mitochondrial DNA analysis"Conservation Genetics. 1. 147-156 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kumazawa, Yoshinori: "Molecular phylogeny of osteoglossoids : a new model for Gondwanian origin and plate tectonic transportation of the Asian arowana"Molecular Biology and Evolution. 17. 1869-1878 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Miya, Masaki: "Use of mitogenomic information in teleostean molecular phylogenetics : A tree-based exploration under the maximum-parsimony optimality criterion"Molecular Phylogenetics and Evolution. 17. 437-455 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ishikawa, Satoshi: "Gene rearrangement around the control region in the mitochondrial genome of conger eel Conger myriaster"Fisheries Science. 66. 1187-1190 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inoue, Jun G.: "Complete mitochondrial DNA sequence of the Japanese sardine, Sardinops melanostictus"Fisheries Science. 66. 924-932 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Aoyama, Jun: "Discrimination of catadromous eels of genus Anguilla using polymerase chain reaction-restriction fragment length polymorphism analysis of the mitochondrial 16S ribosomal RNA domain"Transactions of the American Fisheries Society. 129. 873-878 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Aoyama, Jun: "Are morphological characters distinctive enough to discriminate between two species of freshwater eels, Anguilla celebesensis and A. interioris?"Icthyological Research. 47. 157-161 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamaguchi, Motoomi: "Molecular phylogeny and larval morphological diversity of the lanternfish genus Hygophum (Teleostei : Myctophidae)"Molecular Phylogenetics and Evolution. 15. 103-114 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Miya, Masaki: "Molecular systematics of the deep-sea fish genus Gonostoma (Stomiiformes : Gonostomatidae) : two paraphyletic clades and resurrection of Sigmops"Copeia. 2000. 378-389 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Watanabe, Katsutoshi: "Phylogenetic relationships of the Japanese minnows, Pseudorasbora (Cyprinidae), as inferred from mitochondrial 16SrRNA gene sequences"Ichthyological Research. 47. 43-50 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kumazawa, Yoshinori: "Molecular phylogenetic analysis of vertebrate radiations"IIAS Reports. (ed. K. Iwatsuki), International Institute for Advanced Studies, Kyoto, No. 1999-003. 137-142 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inoue, Jun G.: "Complete mitochondrial DNA sequence of Japanese anchovy, Engraulis japonicus"Fisheries Science. 67. 828-835 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Aoyama, Jun: "Molecular phylogeny and evolution of the freshwater eel, genus Anuguilla"Molecular Phylogenetics and Evolution. 20. 450-459 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ishikawa, Satoshi: "Genetic variation in the mitochondrial and nuclear DNA of the Japanese conger Conger myriaster"Fisheries Science. 67. 1081-1087 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Miya, Masaki: "Mitogenomic exploration of higher teleostean phylogenetics : a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences"Molecular Biology and Evolution. 18. 1993-2009 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inoue, Jun G.: "A mitogenomic perspective on the basal teleostean phylogeny : resolving higher-level relationships with longer DNA sequences"Molecular Phylogenetics and Evolution. 20. 275-285 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kawaguchi, Akira: "Complete mitochondrial DNA sequence of Aulopus japonicus (Teleostei : Aulopiformes), a basal Eurypterygii : Longer DNA sequences and higher-level relationships"Ichthyological Research. 48. 213-223 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ishiguro, Naoya: "Complete mitochondrial DNA sequence of ayu, Plecoglossus altivelis"Fisheries Science. 67. 474-481 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inoue, Jun G.: "Complete mitochondrial DNA sequence of Conger myriaster (Teleostei : Anguillioformes) : Novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families"Journal of Molecular Evolution. 52. 311-320 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ishikawa, Satoshi: "Population structure of the Japanese eel Anguilla japonica as examined by mitochondrial DNA sequencing"Fisheries Science. 67. 246-253 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Suzuki, Nobuaki: "The phylogenetic position of the genus Atheresthes (Pleuronectidae) and its classification : A molecular phylogenetic approach using mitochondrial sequence data"Bulletin of Faculty of Fisheries Hokkaido University. 52. 39-46 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inoue, Jun G.: "Complete mitochondrial DNA sequence of Japanese eel, Anguilla japonica"Fisheries Science. 67. 118-125 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Lee, Jae-Song: "The Complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodonti formes, Rivulidae) and the first description of duplication of a control region in fish"Gene. 280. 1-7 (2001)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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