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2003 Fiscal Year Final Research Report Summary

A novel detection system based on amplification and a strongly correlated hydrogen network

Research Project

Project/Area Number 13031063
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionKyushu University

Principal Investigator

TAKENAKA Shigeori  School of Engineering, Department of Applied Chemistry, Associate Professor, 工学研究院応用化学部門, 助教授 (60188208)

Co-Investigator(Kenkyū-buntansha) NOJIMA Takahiko  School of Engineering, Department of Applied Chemistry, Research Associate, 工学研究院応用化学部門, 助手 (00291930)
Project Period (FY) 2001 – 2003
KeywordsDNA / tetraplex / potassium ion / sensing / intercalator / tetrakis-acridiny peptide / telomerase / telomere DNA
Research Abstract

DNA is regarded as a strongly correlated soft material from a viewpoint of polymer chemistry, as its structure is dictated by many cooperative interactions such as hydrogen bonding, pi-pi stacking of aromatic rings, and electrostatic forces. A new material may be developed successfully using these characteristics of DNA. Alternatively, DNA itself may be utilized aiming at developing a DNA synthesizing technology. So far, we stand in the latter position and have been studying materials containing biochemically useful reagents. Here, we discuss a new reagent by using DNA tetraplex formationwhich is one form of complex structures of DNA. 1)Potassium sensing oligonucleotide, PSO Several metal ions have an important role in living organism. Potassium ion is connected with regulation of other metal ions and some diseases and is attracted in the medical area. So far several reagents were studied in this point, but they have insufficient water-solubility and specificity. In this paper, we firstly succeeded the water-soluble sensing reagent for a potassium ion, which showed the very high specificity for potassium ion over sodium one. 2)Tetrakis-acridiny peptide (TAP) as a potential telomerase inhibitor Some of the cancers are believed to be derived from enhanced activity of telomerase, which catalyzes the extension of telomere DNA termini. Since telomerase cannot bind to a G-quartet structure, compounds which can stabilize such a DNA structure are good candidate for telomerase inhibitor. We tested inhibition ability of TAP, which interacts with DNA, for telomerase. TAP had remarkable stabilization power of a G-quartet structure and hence is promising as a novel telomerase inhibitor.

  • Research Products

    (13 results)

All Other

All Publications (13 results)

  • [Publications] S.Takenaka et al.: "Comparison of potassium ion preference of potassium sensing oligonucleotides PSO-1 and PSO-2, carrying human and Oxytricha telomeric sequence, respectively"Analytical and Bioanalytical Chemistry. 375. 1006-1010 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Bernard Juskowiak et al.: "Spectral properties and binding study of DNA complexes with a rigid bisintercalatorl, 4-bis((N-methylquinolinium-4-yl)vinyl)benzene"Spectrochimica Acta Part A. 59. 1083-1094 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Bernard Juskowiak et al.: "Detection of noncovalent interactions of hairpin oligonucleotide with stilbazoIium ligands by MAL DI TOF mass spectrometry"International Journal of Mass Spectrometry. 229. 225-230 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Ijiro et al.: "Base-pair mapping by chemical force microscopy on nucleobase self-assembled monolayers"Colloids and Surfaces A : Physicochemical and Engineering Aspects. 198-200. 677-682 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Nojima et al.: "Potassium sensing oligonucleotide. PSO, based on DNA tetraplex formation"Nucleic Acids Research Supplement. 2. 125-126 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Ueyama et al.: "Tetrakis-acridinyl peptide : a novel fluorometric reagent for nucleic acid analysis based on the fluorescence dequenching upon DNA binding"Analyst. 127. 886-888 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shigeori Takenaka: "Small Molecule DNA and RNA Binders : From Synthesis to Nucleic Acid Complexes"S, M. Demeunynck, C. Bailly, W.D.Wilson Eds., Wiley-VCH. 22 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Takenaka: "Comparison of potassium ion preference of potassium sensing oligonucleotides, PSO-1 and PSO-2, carrying human and Oxytricha telomeric sequence, respectively"Analytical and Bioanalytical Chemistry. 375. 1006-1010 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Bernard Juskowiak: "Spectral properties and binding study of DNA complexes with a rigid bisintercalatorl, 4-bis ((N-methylquinolinium-4-yl) vinyl) benzene"Spectrochimica Acta Part A. 59. 1083-1094 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Bernard Juskowiak: "Detection of noncovalent interactions of hairpin oligonucleotide with stilbazolium ligands by MALDI TOF mass spectrometry"International Journal of Mass Spectrometry. 229. 225-230 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Ijiro: "Base-pair mapping by chemical force microscopy on nucleobase self-assembled monolayers"Colloids and Surfaces A : Physicochemical and Engineering Aspects. 198-200. 677-682 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Nojima: "Potassium sensing oligonucleotide, PSO, based on DNA tetraplex formation"Nucleic Acids Research Supplement. 2. 125-126 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Ueyama: "Tetrakis-acridinyl peptide : a novel fluorometric reagent for nucleic acid analysis based on the fluorescence dequenching upon DNA binding"Analyst. 127. 886-888 (2002)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2005-04-19  

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