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2003 Fiscal Year Final Research Report Summary

Molecular Design of Composite Biocatalysts Containing Built-in Quinone Cofactor and Metals

Research Project

Project/Area Number 13125204
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionOSAKA UNIVERSITY

Principal Investigator

TANIZAWA Katsuyuki  Osaka Univ., Institute of Scientific and Industrial Research, Professor, 産業科学研究所, 教授 (20133134)

Co-Investigator(Kenkyū-buntansha) YAMAGUCHI Hiroshi  Kwansei Gakuin University, School of Science and Technology, Lecturer, 理工学部, 専任講師 (10252719)
OKAJIMA Toshihide  Osaka Univ., Institute of Scientific and Industrial Research, Assoc, Prof., 産業科学研究所, 助教授 (10247968)
SASAI Hiroaki  Osaka Univ., Institute of Scientific and Industrial Research, Professor, 産業科学研究所, 教授 (90205831)
Project Period (FY) 2001 – 2003
Keywordsquinone cofactor / copper amine oxidase / amine dehydrogenase / topa quinone / built-in cofactor / X-ray crystallography / quinohemoprotein / post-translational modification
Research Abstract

Over the recent decade, a number of unique cofactors derived from amino acid residues and thereby called built-in cofactors have been discovered in various enzyme proteins, including 2,4,5-trihydroxyphenylalanine quinone (topa quinone ; TPQ) of copper amine oxidase and tryptophan tryptophylquinone (TTQ) of bacterial amine dehydrogenase. Both of TPQ and TTQ are encoded as ordinary amino acids (Tyr or Trp) in the enzyme genes and thus are synthesized by post-translational modification. The present studies aimed at elucidating the structure and function of composite biocatalysts containing built-in quinone cofactors and metals for their molecular design. Several representative achievements are as follows.
1)We have identified a novel quinone cofactor, cysteine tryptophylquinone (CTQ) in quinohemoprotein amine dehydrogenases from Paracoccus denitrificans and Pseudomonas putida. CTQ is the forth quinone cofactor derived from amino acids, following TPQ, TTQ, and lysine tyrosylquinone (LTQ) fo … More und in lysyl oxidase.
2)Using the inactive precursor forms of recombinant copper amine oxidases from Arthrobacter globiformis overproduced in Escherichia coli, we demonstrated that TPQ is generated through self-processing of the enzyme proteins with the participation of the bound copper ion.
3)X-ray crystallographic studies of the Cu/TPQ-less inactive enzyme (apoenzyme) as well as the Cu/TPQ-containing active form (holoenzyme) revealed the structural difference only in the active site.
4)Using X-ray crystallography, we have probed the copper-dependent autooxidation process of TPQ. Apo enzyme crystals were anaerobically soaked with copper ; the structure determined from this crystal provided a view of the initial state : the unmodified tyrosine coordinated to the bound copper. Exposure of the copper-bound crystals to oxygen led to the formation of freeze-trapped intermediates ; structural analyses indicated that these intermediates contain dihydroxyphenylalanine quinone and trihydroxyphenylalanine. These are the first visualized intermediates during TPQ biogenesis in copper amine oxidase.
5)A detailed reaction mechanism of copper amine oxidase has been proposed based on X-ray crystallographic and kinetic analyses of a mutant enzyme for the invariant active site base, Asp298.
6)A putative [Fe-S]-binding protein has been shown to be essential for the biosynthesis of active quinohemoprotein amine dehydrogenase containing CTQ. Less

  • Research Products

    (35 results)

All Other

All Publications (35 results)

  • [Publications] I.Vandenberghe, et al.: "The Covalent Structure of the Small Subunit from Pseudomonas putida Amine Dehydrogenase Reveals the Presence of Three Novel Types of Internal Cross-Linkages, All Involving Cysteine in a Thio-Ether Bond"J.Biol.Chem.. 276. 42923-42931 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Datta, et al.: "Structure of a Quinohemoprotein Amine Dehydrogenase with an Uncommon Redox Cofactor and Highly Unusual Crosslinking"Proc.Natl.Acad.Sci.U.S.A.. 98. 14268-14273 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Hirota, et al.: "Spectroscopic Observation of Intermediates Formed during the Oxidative Half Reaction of Copper/Topa Quinone-Containing Phenylethylamine Oxidase"Biochemistry. 40. 15789-15796 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Mli_kova, et al.: "Inhibition of Copper Amine Oxidases by Pyridine-Derived Aldoximes and Ketoximes"Biochimie. 83. 995-1002 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] C.Ogino, et al.: "Identification of novel membrane-bound phospholipase D from Streptoverticillium cinnamoneum, possessing only hydrolytic activity"Biochem.Biophys.Acta. 1530. 23-31 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Tanizawa, et al.: "UDP-Glucose pyrophosphorylase : primary structure and affinity labeling"J.Biochem.Mol.Biol.Biophys.. 5. 83-98 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 谷澤克行: "バイオファクター研究のブレークスルー:「PQQ」(3)TPQ, TTQ, LTQ"ビタミン. 75. 367-373 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Okajima, et al.: "Novel Trimeric Adenylate Kinase from an Extremely Thermoacidophilic Archaeon, Sulfolobus solfataricus : Molecular Cloning, Nucleotide Sequencing, Expression in Escherichia coli, and Characterization of the Recombinant Enzyme"Biosci.Biotech.Biochem.. 66. 2112-2124 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Iwaki, et al.: "Real-time Monitoring of Histamine Released from Rat Basophilic Leukemia (RBL-2H3) Cells with a Histamine Microsensor Using Recombinant Histamine Oxidase"Anal.Biochem.. 304. 236-243 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Kishishita, et al.: "Role of Copper Ion in Bacterial Copper Amine Oxidase : Spectroscopic and Crystallographic Studies of Metal-substituted Enzymes"J.Am.Chem.Soc.. 125. 1041-1055 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Uchida, et al.: "Stereochemistry of 2-Phenylethylamine Oxidation Catalyzed by Bacterial Copper Amine Oxidase"Biosci.Biotechnol.Biochem.. 67. 2664-2667 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ogino, et al.: "Phospholipase D from Streptoverticillium cinnamoneum : Protein Engineering and Application for Phospholipid Production"J.Mol.Cat.. B23. 107-115 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Kataoka, K.Tanizawa: "Alteration of Substrate Specificity of Leucine Dehydrogenase by Site-directed Mutagenesis"J.Mol.Cat.. B23. 299-309 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] D.Sun, et al.: "Chemical and Kinetic Reaction Mechanisms of Quinohemoprotein Amine Dehydrogenase from Paracoccus denitrificans"Biochemistry. 42. 10896-10903 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Kodera, et al.: "Detection of Protein-Protein Interactions on SiO_2/Si Surfaces by Spectroscopic Ellipsometry"Anal.Biochem.. 321. 65-70 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 谷澤克行: "新しいペプチド・ビルトイン型キノン補酵素:その構造と触媒機能および生合成機構"ビタミン. 77. 275-283 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 岡島俊英, 谷澤克行: "ペプチド・ビルトイン型補酵素研究の新展開.酵素の多彩な触媒機能発現のための"しかけ"を探って"蛋白質核酸酵素. 48. 740-746 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Matsunami, et al.: "Chemical Rescue of a Site-specific Mutant of Bacterial Copper Amine Oxidase for Generation of the Topa Quinone Cofactor"Biochemistry. 43. 2178-2187 (2004)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 後藤祐児, 谷澤克行(編著): "バイオサイエンスの新世紀3 タンパク質の分子設計"共立出版株式会社. 201 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] I.Vandenberghe, J.-K.Kim, B.Devreese, A.Hacisalihoglu, H.Iwabuki, T.Okajima, S.Kuroda, O.Adachi, J.A.Jongejan, J.A.Duine, K.Tanizawa, J.Van Beeumen: "The covalent structure of the small subunit from Pseudomonas putida amine dehydrogenase reveals the presence of three novel types of internal cross-linkages, all involving cysteine in a thio-ether bond."J. Biol. Chem.. 276. 42923-42931 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Datta, Y.Mori, K.Takagi, K.Kawaguchi, Z.W.Chen, T.Okajima, S.Kuroda, T.Ikeda, K.Kano, K.Tanizawa, F.S.Mathews: "Structure of a Pr amine dehydrogenase with an uncommon redox cofactor and highly unusual crosslinking."Proc. Natl. Acad. Sci. U.S.A.. 98. 14268-14273 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Hirota, T.Iwamoto, S.Kishishita, T.Okajima, O.Yamauchi, K.Tanizawa: "Spectroscopic observation of intermediates fornied during the oxidative half-reaction of copper/topa quinone-containing phenylethylamine oxidase."Biochemistry. 40. 15789-15796 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Mlickova, M.Sebela, R.Cibulka, I.Frebort, P.Pec, F.Liska, K.Tanizawa: "Inhibition of copper amine oxidases by pyridine-derived aldoximes and ketoximes."Biochimie. 83. 995-1002 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] C.Ogino, Y.Negi, H.Daido, M.Kanemasu, A.Kondo, S.Kuroda, K.Tanizawa, N.Shimizu, H.Fukuda: "Identification of novel membrane-bound phospholipase D from Streptoverticillium cinnamoneum, possessing only hydrolytic activity."Biochem. Biophys. Acta. 1530. 23-31 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Tanizawa, M.Kusunoki, T.Fukui: "UDP-glucose pyrophosphorylase : primary structure and affinity labeling."J. Biochem. Mol. Biol. & Biophys.. 5. 83-98 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Okajima, D.Kitaguchi, K.Fujii, H.Matsuoka, S.Goto, S.Uchiyama, Y.Kobayashi, K.Tanizawa: "Novel trimeric adenylate kinase from an extremely thermoacidophilic archaeon, Sulfolobus solfataricus : molecular cloning, nucleotide sequencing, expression in Escherichia coli, and characterization of the recombinant enzyme."Biosci. Biotech. Biochem.. 66. 2112-2124 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Kim, T.Okajima, S.Kishishita, M.Yoshimura, A.Kawamori, K.Tanizawa, H.Yamaguchi: "X-ray snapshots of quinone cofactor biogenesis in bacterial copper amine oxidase."Nature Struct. Biol.. 9. 591-596 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Iwaki, M.Ogasawara, R.Kurita, O.Niwa, K.Tanizawa, Y.Ohashi, K.Maeyama: "Real-time monitoring of histamine released from rat basophilic leukemia (RBL-2H3) cells with a histamine microsensor using recombinant histamine oxidase."Anal. Biochem.. 304. 236-243 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Kishishita, T.Okajima, M.Kim, H.Yamaguchi, S.Hirota, S.Suzuki, S.Kuroda, K.Tanizawa, M.Mure: "Role of copper ion in bacterial copper amine oxidase : spectroscopic and crystallographic studies of metal-substituted enzymes"J. Am. Chem. Soc.. 125. 1041-1055 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Uchida, A.Ohtani, N.Kohyama, T.Okajima, K.Tanizawa, Y.Yamamoto: "Stereochemistry of 2-phenylethylamine oxidation catalyzed by bacterial copper amine B."Biosci. Biotechnol. Biochem.. 67. 2664-2667 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] C.Ogino, S.Kuroda, S.Tokuyama, A.Kondo, N.Shimizu, K.Tanizawa, H.Fukuda: "J D from Streptoverticillium cinnamoneum : protein engineering and application application for phospholipid production"J. Mol. Cat.. B 23. 107-115 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Kataoka, K.Tanizawa: "Alteration of substrate specificity of leucine dehydrogenase by site-directed mutagenesis"J. Mol. Cat.. B23. 299-309 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] D.Sun, K.Ono, T.Okajima, K.Tanizawa, M.Uchida, Y.Yamamoto, F.S.Mathews, V.L.Davidson: "Chemical and kinetic reaction mechanisms of quinohemoprotein amine dehydrogenase from Paracoccus denitrificans."Biochemistry. 42. 10896-10903 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Kodera, T.Okajima, H.Iwabuki, D.Kitaguchi, S.Kuroda, T.Yoshinobu, K.Tanizawa, M.Futai, H.Iwasaki: "Detection of protein-protein interactions on SiO_2/Si surfaces by spectroscopic ellipsometry."Anal. Biochem.. 321. 65-70 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Matsunami, T.Okajima, S.Hirota, H.Yamaguchi, H.Hori, S.Kuroda, K.Tanizawa: "Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor."Biochemistry. 43. 2178-2187 (2004)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2005-04-19  

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