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2003 Fiscal Year Final Research Report Summary

Development of high time resolution CCD spectrophotometer with weak light sources

Research Project

Project/Area Number 13354010
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 動物生理・代謝
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

SHICHIDA Yoshinori  Kyoto University, Graduate School of Science, Professor, 大学院・理学研究科, 教授 (60127090)

Co-Investigator(Kenkyū-buntansha) HORIGUCHI Chiyoharu  Hamamatsu Photonics KK, Acting group manager, システム(事)・第1設計部, グループ長代理
Project Period (FY) 2001 – 2003
Keywordsrhodopsin / absorption spectroscopy / fluorescence spectroscopy / CCD camera / optical technology / photoreceptor protein / G-protain / GPCR
Research Abstract

Signal transductions in biological systems are initiated by conformational changes of receptor proteins followed by the interaction with, in most case, other proteins. In this research project, we aimed to develop new equipment for monitoring the conformational changes f photoreceptor proteins and their interactions with other proteins under the physiological conditions. We tried to develop a high performance absorption/fluorescence spectrophotometer using a cooled CCD camera as a multi-channel detector. We have succeeded in developing a spectrophotometer that can continuously record the spectra with a time resolution of 10 ms, which is about 10,000 times higher than that of a conventional spectrophotometer that has a single-channel detector. By introducing the monitor beam and excitation laser, optimization of the optics and software, this equipment allowed to measuring the 200 absorption spectra of the visual pigment rhodopsin (quantum yield 〜0.67) with low bleaching (〜3 %) and low baseline drift (〜0.002 OD) during 〜1hr recording time before and after light excitation. The accuracy of the data obtained by the recording condition is comparable to that obtained from conventional spectrophotometers except for the time resolution.
This system allowed us to monitor the interaction process of rhodopsin with G-protein transducin in photoreceptor membranes under the physiologically relevant conditions. In addition, we were able to monitor the binding and the releasing processes of ligand retinal into/from protein as fluorescence changes of the intrinsic tryptophan residues. These results indicate that this spectrophotometer would be a useful tool for furthering our understanding of the molecular mechanisms of biological signal transduction under the physiological conditions.

  • Research Products

    (48 results)

All Other

All Publications (48 results)

  • [Publications] T.Yamashita: "The second cytoplasmic loop of metabotropic glutamate receptor functions at the third loop position of rhodopsin."J.Biochem.(Tokyo). 130. 149-155 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Kandori: "Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore : Infrared spectral comparison with bacteriorhodopsin."Biochemistry. 40. 9238-9246 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Wada: "Retionids and related compounds. Part26. Synthesis of (11-Z)-8, 18-propano-and methano-retinals and conformational study of the rhodopsin choromophore."J.Chem.Soc., Perkin Trans. 1. 2430-2439 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Kandori: "Internal water molecules of pharaonis phoborhodopsin studies by low-temperature infrared spectroscopy."Biochemistry. 40. 15693-15698 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Terakita: "Functional interaction between bovine rhodopsin and G protein transducin."J.Biol.Chem.. 277. 40-46 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Onishi: "Variations in long-and middle-wavelength-sensitive opsin gene lociin crab-eating monkeys."Vision Res.. 42. 281-292 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Nagata: "Isomer-specific interaction of the retinal chromophore with threonine-118 in rhodopsin."J.Phsy.Chem.. 106. 1969-1975 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Kandori: "Interaction of Asn105 with the retinal chromophore during photoisomerization of pharaonis phoborhodopsin."Biochemistry. 41. 4554-4559 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Okada: "Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography."Proc.Natl.Acad.Sci.USA. 99. 5982-5987 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Ueyama: "Novel missense mutations in red/green opsin genes in congenital color-vision deficiencies."BIochem.Biophys.Res.Commun.. 294. 205-209 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Koyanagi: "Amphioxus homologs of Go-coupled rhodopsin and peropsin having 11-cis-and all-trans-retinals as their chromophores."FEBS Letters. 531. 525-528 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Hirano: "Constraints of Opsin Structure on the Ligand Binding Site : Studies with Ring-fused Retinals."Photochem. and Photobiol.. 76. 606-615 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.Kuwayama: "Conserved Proline Residue at Position 189 in Cone Visual Pigments as a Determinant of Molecular Properties Different from Rhodopsin."Biochemistry. 41. 15245-15252 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Nakashima: "Origin of the vertebrate visual cycle : genes encoding retinal photoisomerase and two putative visual cycle proteins are expressed in whole brain of a primitive chordate."J.Comp Neurol.. 460. 180-190 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Furutani: "Structural Changes of Water Molecules during the Photoactivation Processes in Bovine Rhodopsin."Biochemistry. 42. 9619-9625 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Furutani: "Structural Changes in Lumirhodopsin and Metarhodopsin I Studied by Their Photoreactions at 77K."Biochemistry. 42. 8494-8500 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Hirano: "Effect of Anion Binding on the Thermal Reverse Reaction of Bathoiodopsin : Anion Stabilized Two Forms of Iodopsin."Biochemistry. 42. 12700-12707 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Morizumi: "Two-Step Interaction Mechanism of Rhodopsin Intermediates with C-Terminal region of Transducin Alpha-Subunit."J.Biochem.(Tokyo). 134. 259-267 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yamashita: "Diversity of Visual Pigment from the viewpoint of G Protein Activation-Comparison with Other G Protein-Coupled Receptors."Photochem.Photobil.Sci.. 2. 1237-1246 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 七田芳則: "視物質はいかにして多様化したのか-分子進化から探る-"現代化学. 362. 55-62 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 七田芳則: "ロドプシンの光情報変換過程-立体構造の解明により見えてきたメカニズム-"ビタミン. 75. 300-305 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 平野貴弘: "視物質における吸収波長制御機構〜アニオンによる制御を中心として〜"生物物理. 41. 284-289 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 岡田哲二: "ロドプシンの結晶構造からみるG他共役型受容体の構造・機能連関"蛋白質・核酸・酵素. 47. 1123-1130 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 七田芳則: "色覚の分子機構"脳21. 6. 369-373 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yamashita, A.Terakita, Y.Shichida: "The second cytoplasmic loop of metabotropic glutamate receptor functions at the third loop position of rhodopsin"J.Biochem (Tokyo). 130. 149-155 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Kandori, K.Shimono, Y.Sudo, M.Iwamoto, Y.Shichida, N.Kamo: "Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore : Infrared spectral comparison with bacteriorhodopsin"Biochemistry. 40. 9238-9246 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.Wada, M.Tsutsumi, Y.Inatomi, H.Imai, Y.Shichida, M.Ito: "Retionids and related compounds. Part 26. Synthesis of (11-Z)-8, 18-propano-and methano-retinals and conformational study of the rhodopsin choromophore"Chem.Soc., Perkin Trans. 1. 2430-2439 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Kandori, Y.Furutani, K.Shimono, Y.Shichida, N.Kamo: "Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy"Biochemistry. 40(51). 15693-15698 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.Terakita, T.Yamashita, N.Nimbari, D.Kojima, Y.Shichida: "Functional interaction between bovine rhodopsin and G protein transducin"J.Biol.Chem.. 277(1). 40-46 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A.Onishi, S.Koike, M.Ida-Hosonuma, H.Imai, Y.Shichida, O.Takenaka, A.Hanazawa, H.Komatsu, A.Mikami, S.Goto, B Surybroto, A.Farajallah, P.Varavudhi, K.Kitahara, T.Yamamori: "Variations in long-and middle-wavelength-sensitive opsin gene loci in crab-eating monkeys"Vision Res.. 42(3). 281-292 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Nagata, Y.Oura, A.Terakita, H.Kandori, Y.Shichida: "Isomer-specific interaction of the retinal chromophore with threonine-118 in rhodopsin"J.Phys.Chem.. 106(10). 1969-1975 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Kandori, K.Shimono, Y.Shichida, N.Kamo: "Interaction of Asn105 with the retinal chromophore during photoisomerization of pharaonis phoborhodopsin"Biochemistry. 41(14). 4554-4559 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Okada, Y.Fujiyoshi, M.Silow, J.Navarro, E.M.Landau, Y.Shichida: "Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography"Proc.Natl.Acad.Sci., USA. 99(9). 5982-5987 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H.Ueyama, S.Kuwayama, H.Imai, S.Tanabe, S.Oda, Y.Nishida, A.Wada, Y.Shichida, S.Yamade: "Novel missense mutations in red/green opsin genes in congenital color-vision deficiencies"Biochem.Biophys.Res.Commun.. 294(2). 205-209 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Koyanagi, A.Terakita, K.Kubokawa, Y.Shichida: "Amphioxus homologs of Go-coupled rhodopsin and peropsin having 11-cis-and all-trans-retinals as their chromophores"FEBS Letters. 531. 525-528 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Hirano, I.T.Lim, D.M.Kim, X.-G.Zheng, K.Yoshihara, Y.Oyama, H.Imai, Y.Shichida, M.Ishiguro: "Constraints of Opsin Structure on the Ligand Binding Site: Studies with Ring-fused Retinals"Photochem.and Photobiol.. 76(6). 606-615 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S.Kuwayama, H.Imai, T.Hirano, A.Terakita, Y.Shichida: "Conserved Proline Residue at Position 189 in Cone Visual Pigments as a Determinant of Molecular Properties Different from Rhodopsin"Biochemistry. 41. 15245-15252 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Nakashima, T.Kusakabe, R.Kusakabe, A.Terakita, Y.Shichida, M.Tuda: "Origin of the vertebrate visual cycle: genes encoding retinal photoisomerase and two putative visual cycle proteins are expressed in whole brain of a primitive chordate"J.Comp Neurol.. 460(2). 180-190 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Furutani, Y.Shichida, H.Kandori: "Structural Changes of Water Molecules during the Photoactivation Processes in Bovine Rhodopsin"Biochemistry. 42(32). 9619-9625 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Furutani, H.Kandari, Y.Shichida: "Structural Changes in Lumirhodopsin and Metarhodopsin I Studied by Their Photoreactions at 77 K"Biochemistry. 42(28). 8494-8500 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Hirano, H.Imai, Y.Shichida: "Effect of Anion Binding on the Thermal Reverse Reaction of Bathoiodopsin: Anion Stabilizes Two Forms of Iodopsin"Biochemistry. 42(43). 12700-12707 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Morizumi, H.Imai, Y.Shichida: "Two-Step Interaction Mechanism of Rhodopsin Intermediates with C-Terminal Region of Transducin Alpha-Subunit"J.Biochem. (Tokyo). 134. 259-267 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Yamashita, Y.Shichida: "Diversity of Visual Pigment from the Viewpoint of G Protein Activation -Comparison with Other G Protein-Coupled Receptors"Photochem.Photobiol.Sci.. 2. 1237-1246 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Shichida, T.Yamashita: "Functional Diversity of Visual Pigments from a viewpoint of molecular evolution"Chemistry Today. 362. 55-62 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Shichida, S.Nishimura: "Phototransduction Process of Rhodopsin"Vitamin. 75. 300-305 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Hirano, Y.Shichida: "Mechanism of Spectral Tuning in Visual Pigments"Biophysics. 41. 284-289 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Okada, A.Terakita, Y.Shichida: "Structure-Function Relationship in G Protein-Coupled Receptors Deduced from Crystal Structure of Rhodopsin"Proteins, Nucleotides and Enzymes. 47. 1123-1130 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Shichida, A.Onishi: "Molecular basis of Color Vision"Brain21. 6. 369-373 (2003)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2005-04-19  

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