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2002 Fiscal Year Final Research Report Summary

Direct Observation of DNA at a Molecular Scale Level by Three-Dimensional Fourier Filtering Method

Research Project

Project/Area Number 13450036
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied physics, general
Research InstitutionOsaka University

Principal Investigator

TAKAI Yoshizo  Osaka University, Graduate School of Engineering, Professor, 大学院・工学研究科, 教授 (30236179)

Co-Investigator(Kenkyū-buntansha) NAGATOMI Takaharu  Osaka University, Graduate School of Engineering, Assistant Professor, 工学研究科, 助手 (90314369)
KIMURA Yoshihide  Osaka University, Graduate School of Engineering, Associate Professor, 大学院・工学研究科, 助教授 (70221215)
Project Period (FY) 2001 – 2002
KeywordsTransmission Electron Microscope / DNA / Molecular structure / Bio Medical Sample / Aberration-Free observation / Phase Electron Microscopy / Spherical aberration Correction / Low electron dose
Research Abstract

High-resolution transmission electron microscopy (HRTEM), at present, enables atomic level observation. However, the resulting image do not always show atomic structures precisely. Because, the image of the atomic structure is often distorted by multiple scattering of electron waves in the crystal and by aberrations ill the image-forming lenses. To solve the latter requirement, we proposed a new method called three-dimensional Fourier filtering method (3D-FFM), which enables us to observe spherical aberration-free phase and amplitude images separately. In the processing, a filtering shape function extracts only the linear component that appears -on a so-called Ewald sphere and the function works well for improving the S/N ratio by excluding the non-linear components and, quantum noises of the image, which effectively works for the biological sample observation under au extremely law electron dose condition
In this study, the three-dimensional Fourier filtering method (3D FFM) has been successfully applied to observe a deoxyribonucleic acid (DNA) in the molecular scale level. To avoid the deterioration of the image quality cased by the contrast of the supporting film, a holey nano-sized gold grid was used and the DNA that was bridged over on the holey grid by a freeze drying method was observed. The processing made it possible to observe a spherical aberration-free phase image of the DNA with high contrast at in-focus condition. In the phase image of the DNA, periodic fine structures with intervals of 3.4-4.0 A, which seem to correspond to the distance between adjacent base pairs, were partially observed, though it seems to be heavily damaged. If we can reconstruct the DNA image by smaller dose of the electron, more,detail structures of the DNA will be, resolved, which is now under investigation

  • Research Products

    (14 results)

All Other

All Publications (14 results)

  • [Publications] T.Kawasaki, et al.: "Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method"Surf.Interface Anal.. 35. 51-54 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Kawasaki, et al.: "Principles of Phase Reconstruction with Aberration Correction using Three-dimensional Fourier Filtering Method"Proc.of Microscopy and Microanalysis 2002(M&M 2002). 1. 474-475 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Takai, et al.: "Single Atom Dynamism Observed by Real-Time Defocus Image Modulation Processing Electron Microscope"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 203-204 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Kawasaki, et al.: "Quantitative Analysis of Phase Image Reconstructed by Three-Dimensional Fourier Filtering Method"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 435-436 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Nishikata, et al.: "Dynamic Observation of Surface Atom Movement Using High-Speed Image Processing CCD Video Camera"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 363-364 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Takai, et al.: "Dynamic Observation of an Atom-Sized Gold Wire by Real-Time Defocus Image Modulation Processing Electron Microscope"Proc.of Microscopy and Microanalysis 2002 (M&M 2002). 1. 482-483 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Kawasaki, Y.Takai, R.Shimizu: "Distorted Surface And Interface Structures of Catalytic Gold Nanoparticles Observed by Spherical Aberration-Free Electron Microscopy"Appl.Phys.Lett.. 79, No.21. 3509-3511 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Takai, T.Kawasaki, Y.Kimura, T.Ikuta, R.Shimizu: "Dynamic Observation of An Atom Size Gold Wire by Phase Electron Microscope"Phys.Rev.Lett.. 87, No.3. 106105-1-106105-4 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Takai et al.: "Single Atom Dynamism Observed by Real-Time Defocus-Image Modulation Processing Electron Microscope"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 203-204 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Kawasaki et al.: "Quantitative Analysis of Phase Image Reconstructed by Three-Dimensional Fourier Filtering method"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 435-436 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Nishikata et al.: "Dynamic Observation of Surface Atom Movement Using High-Speed Image Processing CCD Video Camera"Proc.of 15th International Congress on Electron Microscopy (ICEM15). 3. 363-364 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Kawasaki et al.: "Principles of Phase Reconstruction with Aberration Correction Using Three-Dimensional Fourier Filtering Method"Proc.of Microscopy and Microanalysis 2002,(M&M 2002). 1. 474-475 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Takai et al.: "Dynamic Observation of an Atom-Sized Gold Wire by Real-Time Defocus Image Modulation Processing Electron Microscope"Proc.of Microscopy and Microanalysis 2002,(M&M 2002). 1. 482-483 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Kawasaki et al.: "Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method"Surf.Interface Anal.. 35. 51-54 (2003)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2005-04-19  

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