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2002 Fiscal Year Final Research Report Summary

Construction of functional nanomachine using Virus components as basic materials

Research Project

Project/Area Number 13470063
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Virology
Research InstitutionTokyo Institute of Technology

Principal Investigator

HANADA Hiroshi  Tokyo Institute of Technology, Frontier Collaborative Research Center, Professor, フロンティア創造共同研究センター, 教授 (80107432)

Co-Investigator(Kenkyū-buntansha) ARISAKA Fumio  Tokyo Institute of Technology, Graduate School of Biosciense and Biotechnology, Associate Professor, 大学院・生命理工学研究科, 助教授 (80133768)
Project Period (FY) 2001 – 2002
KeywordsSV40 / AAV / capsid protein / virus-like particle / recombinant plasmid / nano-machine
Research Abstract

The siman virus 40 (SV40) capsid is composed of 72 pentamers of its major protein, VP1, that are arranged in a icosahedral surface lattice. This structure is maintained by appropriately arranged three types of non-equivalent interactions between the pentamers. However, it remains unclear how these interactions are achieved. We analyzed the in vitro assembly of recombinant VP1. Electron microscopic observations revealed that these VP1s assembled into structurally divergent particles depending on the conditions. The VP1 pentamers efficiently assembled into virus-like particles (VLPs) when high ammonium sulfate concentrations are present. In the presence of Ca2+ at neutral pH, the VP1 pentamers formed not only VLPs but also produced tiny icosahedral particles and tubular structures. Exclusion of Ca2+ resulted in the exclusive formation of the tiny particles. In contrast, at pH 5, the VP1 pentamers produced only extraordinarily long tubular structures. VP1 is thus quite unique in htat it can assemble into such diverse structures, and the assembly properties of SV40 VP1 are clearly different from those of previously reported murine polyoma virus VP1. These observations provide clues that will help elucidate the mechanisms underlying SV40 capsid formation. Moreover, that particular conditions promote the selective assembly of VP1 into different particle structures suggests that we can alter the shapes and sizes of the aritifical SV40 capsids used to deliver drugs or genes.

  • Research Products

    (18 results)

All Other

All Publications (18 results)

  • [Publications] Y.Yamaguchi, N.Inukai, T.Narita, T.Wada, H.Handa: "Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA"Molecular and Cellular Biology. 22. 2918-2927 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Hiramoto, N.Shimizu, T.Nishi, D.Shima, S.Aizawa, H.Tanaka, M.Hatakeyama, H.Kawaguchi, H.Handa: "High-performance affinity beads for identifying anti-NF-κB drug receptors"Methods Enzymology. 353. 81-88 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] C.Sawa, T.Yoshikawa, F.Matsuda-Suzuki, S.Delehouzee, M.Goto, H.Watanabe, J.Sawada, K.Kataoka, H.Handa: "YEAF1/RYBP and YAF-2 are functionally distinct members of a confactor family for the YY1 and E4TF1/hGABP transcription factors"J.Biological Chemistry. 277. 22484-22490 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Yamaguchi, S.Delehouzee, H.Handa: "HIV and hepatitis delta virus : evolution takes different paths to relieve blocks in transcriptional elongation"Microbes Infection. 4. 1169-1175 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Nishi, N.Shimizu, M.Hiramoto, I.Sato, Y.Yamaguchi, M.Hasegawa, S.Aizawa, H.Tanaka, K.Kataoka, H.Watanabe, H.Handa: "Spatial redox regulation of a critical cysteine residue of NF-κB in vivo"J.Biological Chemistry. 277. 44548-44556 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K-I.Ishizu, S.Kanesashi, S-I.Han, M.Kawano, S.Tomita, H.Watanabe, K.Kataoka, H.Handa: "Siman Viirus 40 VP1 Capsid Protein Assembled in vitro Forms Structually Divergent Particles"J.General Virology. 84. 1899-1905 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 半田 宏 共著, 小泉光恵, 奥山喜久夫, 目義雄 編集: "ナノ粒子の製造・評価・応用・機器の最新技術"株式会社 シーエムシー出版. 272 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Ymaguchi, N.lnukai, T.Narita, T.Wada and H.Handa: "Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA"Mol. Cell Biol.. 22. 2918-2927 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Nishi, N.Shimizu, M.Hiramoto, I.Sato, Y.Yamaguchi, M.Hasegawa, S.Aizawa, H.Tanaka, K.Kataoka, H.Watanabe andH. Handa.: "Spatial redox regulation of a critical cysteine residue of NF-_KB in vivo"J. Biol. Chem.. 277. 44548-44556 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K.Kataoka, S-I. Han, S.Shioda, M.Hirai, M.Nishizawa and H.Handa.: "MafA is a glucose-regulated and pancreatic beta-cell-specific transcriptional activator for the insulin gene"J. Biol. Chem.. 277. 49903-49910 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y.Yamaguchi, S.Delehouzee and H.Handa.: "HIV and hepatitis delta virus evolution takes different paths to relieve blocks in transcriptional elongation"Microbes Infect,. 4. 1169-1175 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] C.Sawa, T.Yoshikawa, F Matsuda-Suzuki, S.Delehouzee, M.Goto, H.Watanabe, J.Sawada, K.Kataoka, and H.Handa: "YEAF1/RYBP and YAF-2 are functionally distinct members of a contactor family for the YY1 and E4TF1/hGABP transcription factors"J. Biol. Chem.. 277. 22484-22490 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M.Hiramoto, N.Shimizu, T Nishi, D Shima, S.Aizawa, H.Tanaka, M Hatakeyama, H Kawaguchi and H.Handa: "High-performance affinity beads for identifying anti-NF- _K B drug receptors"Methods Enzymol.. 353. 81-88 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T.Narita, Y.Yamaauchi, K.Yano, S Sugimoto, T.Wada, D-K.Kim, J.Hasegawa, M.Omori, N.lnukai, M Endou, T.Yamada, and H.Handa: "Human transcription elongation factor NELF : Identification of novel subunits and reconstitution of the functionally active comolex"Mol. Cell. Biol.. 23. 1863-1873 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] D-K.Kim, N.lnukai, T.Yamada, A Furuya, H.Sato, Y.Yamaguchi, T.Wada and H.Handa.: "Requirement for human Spt4 in RNA polymerase II elongation control in vitro"Genes Cells. 8. 371-378 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] D.Shima, M.Yugami, M.Tatsuno, T.Wada, Y.Yamaguchi and H. Handa: "Mechanism of H-8 inhibition of Cyclin-dependent kinase 9 : study using inhibitor-immobilized matrices"Genes Cells. 8. 215-223 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J.Hasegawa, M.Endou, T.Narita, T.Yamada, Y.Yamaguchi, T.Wada and H.Handa: "A rapid purification method for human RNA polymerase II by two-step affinity chromatography"J. Biochem.. 133. 133-138 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K-I.lshizu, S.Kanesashi,S-I.Han, M. Kawano, S.Tomita, H. Watanabe, K. Kataoka and H. handa.: "Siman Viirus 40 VP1 Capsid Protein Assembled in vitro Forms Structually Divergent Particles"J. General Virology. 84. 1899-1905 (2003)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2004-04-14  

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