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2004 Fiscal Year Final Research Report Summary

Studies on the crystal structure of clotting factors and its binding proteins.

Research Project

Project/Area Number 13480197
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionMEIJI PHARMACEUTICAL UNIVERSITY

Principal Investigator

MORITA Takashi  MEIJI PHARMACEUTICAL UNIVERSITY, FACULTY OF PHARMACY, Professor, 薬学部, 教授 (90128108)

Co-Investigator(Kenkyū-buntansha) ATODA Hideko  MEIJI PHARMACEUTICAL UNIVERSITY, FACULTY OF PHARMACY, Associate Professor, 助教授 (20221046)
MIZUNO Hiroshi  NEC Soft, LTD., VALWAY TECHNOLOGY CENTER, Senior investigator, VALWAYテクノロジーセンター, 主席研究員
YAMAZAKI Yasuo  MEIJI PHARMACEUTICAL UNIVERSITY, FACULTY OF PHARMACY, Instructor, 助手 (30308621)
Project Period (FY) 2001 – 2004
Keywordscarboxyglutamic acid (Gla) domains / factor X / factor IX / Mg^<2+> ions / collagen receptor / glycoprotein(GP) Ia / IIa / EMS16 / 凝固IX因子
Research Abstract

We have recently isolated several C-type lectin-like proteins(CLPs) with a variety of biological activities, including anticoagulant- and platelet-modulating activities. The crystal structures ofγ-carboxyglutamic acid (Gla) domains of coagulation factors X and IX have been clarified in structural studies of complexes between the Gla domains of factor X and X-bp (a venom CLP) and between the Gla domain of factor IX and IX-bp (a venom CLP). Our recent results clearly suggest that Mg^<2+> ions are required to maintain native conformation and in vivo function of factor IX Gla domain during blood coagulation.
EMS16 from the venom of Echis multisquamatus binds to the collagen receptor, integrin α2β1,also known as glycoprotein(GP) Ia/IIa, and specifically inhibits collagen binding. We have reported the crystal structure of EMS16 in complex with recombinant integrin α2-I domain that plays a central role in collagen binding. The structure of the complex at 1.9 Å resolution revealed that the collagen-binding site of the α2-I domain is covered completely by the bound EMS16. This blockage by EMS16 appears to spatially inhibit collagen binding to the α2-I domain.

  • Research Products

    (51 results)

All 2005 2004 2003 2002 2001 1996

All Journal Article (49 results) Book (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Crystal structures of novel vascular endothelial growth factors (VEGF) from snake venoms.: Insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1.2005

    • Author(s)
      須藤 恭子ら
    • Journal Title

      J.Biol.Chem 280

      Pages: 2126-2131

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Structures and functions of snake venom CLPs (C-type lectin-like proteins) with anticoagulant-, procoagulant-, and platelet-modulating activities.2005

    • Author(s)
      森田 隆司
    • Journal Title

      Toxicon 45

      Pages: 1099-1114

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structures of novel vascular endothelial growth factors(VEGF) from snake venoms. : Insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1.2005

    • Author(s)
      Suto, K., Yamazaki, Y., Morita, T., Mizuno, H.
    • Journal Title

      J.Biol.Chem 280

      Pages: 2126-2131

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Structures and functions of snake venom CLPs (C-type lectin-like proteins) with anticoagulant-, procoagulant-, and platelet-modulating activities.2005

    • Journal Title

      Toxicon 45

      Pages: 1099-1114

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Crystal structure of EMS16 in complex with the integrin α2-I domain.2004

    • Author(s)
      堀井 克紀ら
    • Journal Title

      J.Mol.Biol. 341

      Pages: 519-527

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Use of snake venom inhibitors in studies of the function and tertiary structure of coagulation factor.2004

    • Author(s)
      森田 隆司
    • Journal Title

      International Journal of Hematology 79

      Pages: 123-129

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Structure and function of snake venom cysteine-rich secretory proteins2004

    • Author(s)
      山崎 泰男ら
    • Journal Title

      Toxicon 44

      Pages: 227-231

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] C-type lectin-related Proteins of Snake venoms.2004

    • Author(s)
      森田 隆司
    • Journal Title

      Current Drug Targets - Cardiovascular and Haematological Disorders 4

      Pages: 357-373

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structure of EMS16 in complex with the integrin α2-I domain.2004

    • Author(s)
      Horii, K., Okuda, D., Morita, T., Mizuno, H.
    • Journal Title

      J.Mol.Biol. 341

      Pages: 519-527

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Use of Snake Venom Inhibitors in Studies of the Function and Tertiary Structure of Coagulation Factors.2004

    • Author(s)
      T.Morita
    • Journal Title

      Int.J.Hematol. 79

      Pages: 123-129

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Structure and function of snake venom cysteine-rich secretory proteins.2004

    • Author(s)
      Y.Yamazaki, T.Morita
    • Journal Title

      Toxicon 44

      Pages: 227-231

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] C-type lectin-related Proteins of Snake venoms.2004

    • Author(s)
      T.Morita
    • Journal Title

      Current Drug Targets-Cardiovascular and Haematological Disorders 4

      Pages: 357-373

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Mutations in autolytic loop-2 and at Asp^<554> of human prothrombin that enhance protein C activation by meizothrombin.2003

    • Author(s)
      小池 恒ら
    • Journal Title

      J.Biol.Chem. 278

      Pages: 15015-15022

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structure of Mg^<2+>- and Ca^<2+>-bound Gla domain of factor IX complexed with binding protein.2003

    • Author(s)
      鹿本 泰生ら
    • Journal Title

      J.Biol.Chem. 278

      Pages: 24090-24094

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structure of von Willebrand factor Al domain complexed with snake venom, bitiscetin : insight into glycoprotein Ibalpha binding mechanism induced by snake venom proteins.2003

    • Author(s)
      真板 宣夫ら
    • Journal Title

      J.Biol.Chem. 278

      Pages: 37777-37781

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structure of trimestatin, a disintegrin containing a cell adhesion recognition motif RGD.2003

    • Author(s)
      藤井 佳史ら
    • Journal Title

      J.Mol.Biol. 332

      Pages: 1115-1122

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Structural characterization of EMS16, an antagonist of collagen receptor (GPIa/IIa) from the venom of Echis multisquamatus.2003

    • Author(s)
      堀井 克紀ら
    • Journal Title

      Biochemistry 42

      Pages: 12497-12502

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Characterization and preliminary crystallographic studies of EMS16, an antagonist of collagen receptor (GPIa/IIa) from the venom of Echis multisquamatus.2003

    • Author(s)
      奥田 大樹ら
    • Journal Title

      J.Biochem. 134

      Pages: 19-23

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Snake venom vascular endothelial growth factors (VEGFs) exhibit potent activity through their specific recognition of KDR (VEGF receptor 2).2003

    • Author(s)
      山崎 泰男ら
    • Journal Title

      J.Biol.Chem. 278

      Pages: 51985-51988

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Criystal structure of Mg^<2+>-and Ca^<2+>-bound Gla domain of factor IX complexed with binding protein.2003

    • Author(s)
      Shikamoto Y., Morita T., Fujimoto Z., Mizuno H.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 24090-24094

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Characterization and preliminary crystallographic studies of EMS16,an antagonist of collagen receptor (GPIa/IIa) from the venom of Echis multisquamatus.2003

    • Author(s)
      Okuda D., Horii K., Mizuno H., Morita T.
    • Journal Title

      J.Biochem. 134

      Pages: 19-23

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Crystal Structure of von willebrand factor Al domain complexed with snake venom, Bitiscetin.2003

    • Author(s)
      Maita N., Nishio K., Nishimoto E., Matsui T., Shikamoto Y., Morita T., Sadler J.E., Mizuno H.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 37777-37781

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Crystal structure of trimestatin, a disintegrin containing a cell adhesion recognition motif RGD.2003

    • Author(s)
      Fujii Y., Okuda D., Fujimoto Z., Horii K., Morita T., Mizuno, H.
    • Journal Title

      J.Mol.Biol. 332

      Pages: 1115-1122

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Structural characterization of EMS16,an antagonist of collagen receptor (GPIa/IIa) from the venom of Echis multisquamatus.2003

    • Author(s)
      Horii K., Okuda D., Morita T., Mizuno H.
    • Journal Title

      Biochemistry 42

      Pages: 12497-12502

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Characterization and preliminary crystallographic studies of EMS16,an antagonist of collagen receptor (GPIa/IIa) from the venom of Echis multisquamatus.2003

    • Author(s)
      Okuda, D., Horii, K., Mizuno, H., Morita, T.
    • Journal Title

      J.Biochem. 134

      Pages: 19-23

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Snake Venom Vascular Endothelial Growth Factors VEGFs) Exhibit Potent Activity through Their Specific Recognition of KDR (VEGF Receptor 2).2003

    • Author(s)
      Yamazaki Y., Takani K., Atoda H., Morita T.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 51985-51988

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Cloning and characterization of novel snake venom proteins that block smooth muscle contraction.2002

    • Author(s)
      山崎 泰男ら
    • Journal Title

      Eur.J.Biochem. 269

      Pages: 2708-2715

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Purification and cloning of toxins from elapid venoms that target cyclic nucleotide-gated ion channels.2002

    • Author(s)
      山崎 泰男ら
    • Journal Title

      Biochemistry 41

      Pages: 11331-11337

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Prothrombin activation during carbon tetrachloride-induced acute liver injury in mice.2002

    • Author(s)
      水口 浩一ら
    • Journal Title

      Thrombosis Res. 106

      Pages: 257-261

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Calcium binding analysis and molecular modeling reveal echis coagulation factor IX/factor X-binding protein has the Ca-binding properties and Ca ion-independent folding of other C-type lectin-like proteins.2002

    • Author(s)
      阿刀田 英子ら
    • Journal Title

      FEBS Lett. 531

      Pages: 229-234

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A new gene structure of disintegrin family : A subunit of dimeric disintegrin has short coding region.2002

    • Author(s)
      奥田 大樹ら
    • Journal Title

      Biochemistry 41

      Pages: 14248-14253

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A Defect in collagen receptor-Ca^<2+> signaling system in platelets from cattle with Chediak-Higashi syndrome.2002

    • Author(s)
      Shiraishi M., Kawashima S., Moroi M., Shin Y., Morita T., Horii Y., Ikeda M., Ito K.
    • Journal Title

      Thromb.Haemost. 87

      Pages: 334-341

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Cloning and characterization of novel snake venom proteins that block smooth muscle contraction.2002

    • Author(s)
      Yamazaki Y., Koike H., Sugiyama Y., Motoyoshi K., Wada T., Hishinuma S., Mita M., Morita T.
    • Journal Title

      Ear.J.Biochem. 269

      Pages: 2708-2715

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Purification and cloning of toxins from elapid venoms that target cyclic nucleotide-gated ion channels.2002

    • Author(s)
      Yamazaki Y., Brown R.L., Morita T.
    • Journal Title

      Biochemistry 41

      Pages: 11331-11337

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Prothrombin activation during carbon tetrachloride-induced acute liver injury in mice.2002

    • Author(s)
      Mizuguchi H., Yamazaki Y., Shikamoto Y., Shin Y., Sonoda J., Morita T.
    • Journal Title

      Thrombosis Res. 106

      Pages: 257-261

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Calcium binding analysis and molecular modeling reveal echis coagulation factor IX/factor X-binding protein has the Ca-binding properties and Ca ion-independent folding of other C- type lectin-like proteins.2002

    • Author(s)
      Atoda H., Kaneko H., Mizuno H., Morita T.
    • Journal Title

      FEBS Lett. 531

      Pages: 229-234

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A new gene structure of the disintegrin family : A subunit of dimeric disintegrin has short coding region.2002

    • Author(s)
      Okuda D., Koike H., Morita T.
    • Journal Title

      Biochemistry 41

      Pages: 14248-14254

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Mutations in the autolytic loop-2 and at Asp^<554> of human prothrombin that enhance protein C activation by meizothrombin.2002

    • Author(s)
      Koike H., Okuda D., Morita T.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 15015-15022

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Comparative biochemistry of disintegrins isolated from snake venom : Consideration of the taxonomy and geographical distribution of the snakes in the genus Echis.2001

    • Author(s)
      奥田 大樹ら
    • Journal Title

      J.Biochem. 129

      Pages: 615-620

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The determination of plasma prothrombin level by Ca^<2+>-dependent prothrombin activator (CA-1) during warfarin anticoagulation.2001

    • Author(s)
      岩橋 英彦ら
    • Journal Title

      J.Heart Valve Dis. 10

      Pages: 388-392

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structure of an anticoagulant protein in complex with the Gla domain of factor X.2001

    • Author(s)
      水野 洋ら
    • Journal Title

      Proc.Natl.Acad.Sci.USA 98

      Pages: 7230-7234

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Purification and characterization of a new RGD/KGD-containing dimeric disintegrin, piscivostatin, from the venom of Agkistrodon piscivorus piscivorus : The unique effect of piscivostatin on platelet aggregation.2001

    • Author(s)
      奥田 大樹ら
    • Journal Title

      J.Biochem. 130

      Pages: 407-415

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer.2001

    • Author(s)
      広津 晶子ら
    • Journal Title

      Biochemistry 40

      Pages: 13592-13597

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A Defect in collagen receptor-Ca^<2+> signaling system in platelets from cattle with Chediak-Higashi syndrome.2001

    • Author(s)
      白石 光也ら
    • Journal Title

      Thromb.Haemost. 87

      Pages: 334-341

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Comparative biochemistry of disintegrins isolated from snake venom : Consideration of the taxonomy and geographical distribution of the snakes in the genus Echis.2001

    • Author(s)
      Okuda D., Nozaki C., Sekiya F., Morita T.
    • Journal Title

      J.Biochem. 129

      Pages: 615-620

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The determination of plasma prothrombin level by Ca^<2+>-dependent prothrombin activator (CA-1) during warfarin anticoagulation.2001

    • Author(s)
      Iwahashi H., Kimura M., Nakajima N., Yamada D., Morita T.
    • Journal Title

      J.Heart Valve Dis. 10

      Pages: 388-392

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Crystal structure of an anticoagulant protein in complex with the Gla domain of factor X.2001

    • Author(s)
      Mizuno H., Fujimoto Z., Atoda H., Morita T.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 98

      Pages: 7230-7234

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Purification and characterization of a new RGD/KGD-containing dimeric disintegrin, piscivostatin, from the venom of Agkistrodon piscivorus piscivorus : The unique effect of piscivostatin on platelet aggregation.2001

    • Author(s)
      Okuda D., Morita T.
    • Journal Title

      J.Biochem. 130

      Pages: 407-415

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer.2001

    • Author(s)
      Hirotsu S., Mizuno H., Fukuda K., Ma C.Q., Matsui T., Hamako J., Morita T., Titani, K.
    • Journal Title

      Biochemistry 40

      Pages: 13592-13597

    • Description
      「研究成果報告書概要(欧文)」より
  • [Book] Handbook of Proteolytic Enzymes 2nd ed.2004

    • Author(s)
      森田 隆司
    • Total Pages
      3
    • Publisher
      Academic Press, Amsterdam
    • Description
      「研究成果報告書概要(和文)」より
  • [Patent(Industrial Property Rights)] カルシウム要求性プロトロンビン活性化酵素1996

    • Inventor(s)
      森田隆司
    • Industrial Property Rights Holder
      エーザイ株式会社
    • Industrial Property Number
      特許第3322676号(P3322676)
    • Filing Date
      1996-02-29
    • Acquisition Date
      2002-06-28
    • Description
      「研究成果報告書概要(和文)」より

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Published: 2006-07-11  

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