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2005 Fiscal Year Final Research Report Summary

Bacterial capturing and biodegradation of fine particles in the ocean

Research Project

Project/Area Number 15310007
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Environmental dynamic analysis
Research InstitutionThe University of Tokyo

Principal Investigator

KOGURE Kazuhiro  The University of Tokyo, Ocean Research Institute, Professor, 海洋研究所, 教授 (10161895)

Co-Investigator(Kenkyū-buntansha) MORISAKI Hisao  Ritsumeikan University, College of Science and Engineering, Professor, 理工学部, 教授 (50125671)
CHIURA Hiroshi Xavier  International Christian University, Division of Natural Sciences, Associate Professor, 教養学部, 準教授 (00103698)
WADA Minoru  The University of Tokyo, Ocean Research Institute, Research Associate, 海洋研究所, 助手 (70292860)
Project Period (FY) 2003 – 2005
KeywordsMarine bacteria / fine particles / paramagnetic beads / attachment / virus / polymer layer / repulsion energy
Research Abstract

In surface layer of the ocean, there are approximately ten to one hundred million of fine particles of which radius is less than 0.5 micron in one ml of seawater. How those particles are metabolized? How do bacteria interact with those particles? What is the difference between the bacterial interaction with fine particles and large surfaces? This project was conducted to answer these questions. After three years research, the followings have been clarified. First, the concept of "bacterial particle capturing" was proposed after a series of newly developed method using paramagnetic beads. Second, the release of fine particles from marine bacterium, Vibrio fisheri was examined under various physicochemical conditions. It was clarified that the bacterium produce virus like particles containing nucleic acid and may serve as mediator of gene transfer. Third, the importance of surface polymer layers for bacterial interaction with large particles or attachment were investigated and the involvement of repulsion energy was clarified.

  • Research Products

    (26 results)

All 2006 2005

All Journal Article (23 results) Book (3 results)

  • [Journal Article] The surface and endophytic culturable bacterial flora of the maturing seeds of rice plants (Oryza sativa) cultivated in a paddy field.2006

    • Author(s)
      Mano, H, F.Tanaka, A.Watanabe, H.Kaga, S.Okunishi, H.Morisaki
    • Journal Title

      Microbes and Environments 21(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Application of Silkworm Larva assay to determination of peptidoglvcan in natural seawater.2006

    • Author(s)
      Shibata, A, K.Ohwada, K.Tsuchiya, K.Kogure
    • Journal Title

      Journal of Oceanography 62

      Pages: 91-97

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] An automatic counter of marine bacteria with LED illumination.2006

    • Author(s)
      Nishimura, M, E.Kamiya, K.Kogure
    • Journal Title

      Fisheries Science 72(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The Bacterial motility : links to the environment and a driving force for microbial physics.2006

    • Author(s)
      Mitchell, J.G, K.Kogure
    • Journal Title

      FEMS Microbiology Ecology 55

      Pages: 3-16

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The surface and endophytic culturable bacterial flora of the maturing seeds of rice plants (Oryza sativa) cultivated in a paddy field.2006

    • Author(s)
      Mano, H., F.Tanaka, A.Watanabe, H.Kaga, S.Okunishi, H.Morisaki
    • Journal Title

      Microbes and Environments 21(in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Application of Silkworm Larva assay to determination of peptidoglycan in natural seawater.2006

    • Author(s)
      Shibata, A., K.Ohwada, K.Tsuchiya, K.Kogure
    • Journal Title

      Journal of Oceanography 62

      Pages: 91-97

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] An automatic counter of marine bacteria with LED illumination.2006

    • Author(s)
      Nishimura, M., E.Kamiya, K.Kogure
    • Journal Title

      Fisheries Science 72(in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The Bacterial motility : links to the environment and a driving force for microbial physics.2006

    • Author(s)
      Mitchell, J.G., K.Kogure
    • Journal Title

      FEMS Microbiology Ecology 55

      Pages: 3-16

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The proceedings of international symposium on extremophiles and their applications.2006

    • Author(s)
      Sugitate, T., H.X.Chiura
    • Journal Title

      International Society for Extremophiles, Hamburg, Germany 385

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Interaction among Marine Organisms2006

    • Author(s)
      K.Kogure (Editor)
    • Journal Title

      Tokai University Press 346

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Bacterial Flora of the Biofilm Formed on the Submerged Surface of the Reed Phragmites australis.2005

    • Author(s)
      Yamamoto, M, H.Murai, A.Takeda, S.Okunishi, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 14-24

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Characteristics of the Mucus Layer at the Surface of Bluegill (Lepomis macrochirus) and the Bacterial Flora in the Mucus.2005

    • Author(s)
      Hashizume, T, C.Takai, M.Naito, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 69-80

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The Effect of the Surface Mucus of Bluegills (Lepomis macrochirus) on Bacterial Activity.2005

    • Author(s)
      Hashizume, T, M.Obayashi, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 97-103

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Bacterial Flora of Endophytes in the Maturing Seed of Cultivated Rice (Oryza sativa).2005

    • Author(s)
      Okunishi, S, K.Sako, H.Mano, A.Imamura, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 168-177

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Interaction between clay minerals and hydrocarbon-utilizing indigenous microorganisms in high concentration of heavy oil : Implications for bioremediation.2005

    • Author(s)
      Chaerun, S.K, Tazaki, K, Asada, R, Kogure,K.
    • Journal Title

      Clay Minerals 40

      Pages: 105-114

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Separation of active and inactive fractions from starved culture of Vibrio parahaemolyticus by density dependent cell sorting.2005

    • Author(s)
      Nayak, B.B., E.Kamiya, T., Nishino, M.Wada, M.Nishimura, K.Kogure.
    • Journal Title

      FEMS Microbiology Ecology 51

      Pages: 179-186

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Bacterial Flora of the Biofilm Formed on the Submerged Surface of the Reed Phragmites australis.2005

    • Author(s)
      Yamamoto, M., H.Murai, A.Takeda, S.Okunishi, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 14-24

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Characteristics of the Mucus Layer at the Surface of Bluegill (Lepomis macrochirus) and the Bacterial Flora in the Mucus.2005

    • Author(s)
      Hashizume, T., C.Takai, M.Naito, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 69-80

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The Effect of the Surface Mucus of Bluegills (Lepomis macrochirus) on Bacterial Activity.2005

    • Author(s)
      Hashizume, T., M.Obayashi, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 97-103

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Bacterial Flora of Endophytes in the Maturing Seed of Cultivated Rice (Oryza sativa).2005

    • Author(s)
      Okunishi, S., K.Sako, H.Mano, A.Imamura, H.Morisaki
    • Journal Title

      Microbes and Environments 20

      Pages: 168-177

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Interaction between clay minerals and hydrocarbon-utilizing indigenous microorganisms in high concentration of heavy oil : Implications for bioremediation.2005

    • Author(s)
      Chaerun, S.K., Tazaki, K., Asada, R., Kogure, K.
    • Journal Title

      Clay Minerals 40

      Pages: 105-114

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Separation of active and inactive fractioins from starved culture of Vibrio parahaemolyticus by density dependent cell sorting.2005

    • Author(s)
      Nayak, B.B., E.Kamiya, T., Nishino, M.Wada, M.Nishimura, K.Kogure
    • Journal Title

      FEMS Microbiology Ecology 51

      Pages: 179-186

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Proceedings of 7^<th> Multinational Congress on Microscopy.2005

    • Author(s)
      B.Velimirov, H.X.Chiura, K.Kogure
    • Journal Title

      Slovene Society for Microbiology, Ljubljana, Slovenia 418

    • Description
      「研究成果報告書概要(欧文)」より
  • [Book] The proceedings of international symposium on extremophiles and their applications.2006

    • Author(s)
      Sugitate, T, H.X.Chiura
    • Total Pages
      385
    • Publisher
      International Society for Extremophiles, Hamburg, Germany
    • Description
      「研究成果報告書概要(和文)」より
  • [Book] 海洋生物の連鎖2006

    • Author(s)
      木暮一啓
    • Total Pages
      346
    • Publisher
      東海大学出版会
    • Description
      「研究成果報告書概要(和文)」より
  • [Book] Proceedings of 7^<th> Multinational Congress on Microscopy.2005

    • Author(s)
      B.Velimirov, H.X.Chiura, K.Kogure
    • Total Pages
      418
    • Publisher
      Slovene Society for Microbiology, Ljubljana, Slovenia,
    • Description
      「研究成果報告書概要(和文)」より

URL: 

Published: 2007-12-13  

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