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2004 Fiscal Year Final Research Report Summary

New Development of Reaction Dynamics Theory based on the Free Energy Gradient Method

Research Project

Project/Area Number 15350010
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical chemistry
Research InstitutionNAGOYA UNIVERSITY

Principal Investigator

NAGAOKA Masataka  NAGOYA UNIVERSITY, GRADUATE SCHOOL OF INFORMATION SCIENCE, PROFESSOR, 大学院・情報科学研究科, 教授 (50201679)

Project Period (FY) 2003 – 2004
Keywordsfree energy gradient method / QM / MM-MD method / free energy perturbation theory / free energy surface / molecular dynamics method / microscopic entropy effect / structure optimization / temperature-pressure effect
Research Abstract

In this Research Program, notifying the multidimensionality of chemically reacting systems, a number of research were executed focusing the following two points : (a)they are time-dependent chemical processes and (b)nonlinear, nonequilibrium and nonstationary processes :
(1)The reactive energy transfer mechanism was analyzed by using not only the Fokker-Planck equation for polyatomic molecules but also molecular dynamics(MD) simulation.
(2)We explained some typical characteristics in nonequilibrium dynamics by using MD simulation and develpoed a novel treatment to locate critical points on the free energy hypersurface, i.e., free energy gradient method(FEGM).
(3)We investigated the connection between the above method and a model theory based on the Fokker-Planck equation.
In the middle of the research term, several results with respect to the reactive energy transfer in aqueous solution, were published in the annual meetings of Japan Chemical Society and CSW2004. Further, they were collected and published as several research articles as described in the following section, i.e., 11 REFERENCE.

  • Research Products

    (6 results)

All 2004 2003

All Journal Article (5 results) Book (1 results)

  • [Journal Article] Slowdown of Water Diffusion around Protein in Aqueous Solution with Ectoine2004

    • Author(s)
      I.Yu, M.Nagaoka
    • Journal Title

      Chemical Physics Letters 388

      Pages: 316-321

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Ab Initio Study of Noncatalytic Beckmann Rearrangement and Hydrolysis of Cyclohexanone-Oxime in Subcritical and Supercritical Water Using the Polarizable Continuum Model2003

    • Author(s)
      Y.Yamaguchi, N.Yasutake, M.Nagaoka
    • Journal Title

      Journal of Molecular Structer (Theochem) 639

      Pages: 137-150

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Hydrated Structure of Ammonia-Water Molecule Pair via the Free Energy Gradient Method : Realization of Zero Gradient and Force Balance on Free Energy Surfaces2003

    • Author(s)
      Y.Nagae, Y.Oishi, N.Naruse, M.Nagaoka
    • Journal Title

      Journal of Chemical Physics 119・15

      Pages: 7972-7978

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Structure Optimization of Solute Molecules via Free Energy Gradient Method2003

    • Author(s)
      M.Nagaoka
    • Journal Title

      Bulletin of the Korean Chemical Society 24・6

      Pages: 805-808

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Ab Initio Study of Noncatalytic Beckmann Rearrangement and Hydrolysis of Cyclohexanone-Oxime in Subcritical and Supercritical Water Using the Polarizable Continuui Model2003

    • Author(s)
      Y.Yamaguchi, N.Yasutake, M.Nagaoka
    • Journal Title

      Journal of Molecular Structer(Theochem) 639

      Pages: 137-150

    • Description
      「研究成果報告書概要(欧文)」より
  • [Book] 実験化学講座12 計算化学(日本化学会編)2004

    • Author(s)
      長岡正隆(分担執筆)
    • Publisher
      丸善
    • Description
      「研究成果報告書概要(和文)」より

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Published: 2006-07-11  

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