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2017 Fiscal Year Annual Research Report

Integrative sensory evolution in primates revealed by population genetic analysis of olfactory, taste, and color vision receptor genes

Research Project

Project/Area Number 15H02421
Research InstitutionThe University of Tokyo

Principal Investigator

河村 正二  東京大学, 大学院新領域創成科学研究科, 教授 (40282727)

Co-Investigator(Kenkyū-buntansha) 今井 啓雄  京都大学, 霊長類研究所, 准教授 (60314176)
手島 康介  九州大学, 理学研究院, 助教 (20447593)
太田 博樹  北里大学, 医学部, 准教授 (40401228)
Project Period (FY) 2015-04-01 – 2018-03-31
Keywords分子・遺伝 / 感覚進化 / 色覚 / ケミカルセンス / 霊長類
Outline of Annual Research Achievements

サキ亜科を除くすべての新世界ザル亜科から1種ずつ計6個体[Saguinus fuscicallis(マーモセット亜科)、Aotus azarae(ヨザル亜科)、Sapajus apella(オマキザル亜科)、Ateles geoffroyi(クモザル亜科)、Alouatta Palliata(ホエザル亜科)、Callicebus moloch(ティティ亜科)]を対象に、嗅覚受容体(OR)、苦味受容体(TAS2Rs)、旨味甘味受容体(TAS1Rs)、L/M及びSオプシンの各遺伝子そして中立対照領域に対するターゲットキャプチャー(TC)と大規模並列シークエンシング(NGS)を行い、これらのレパートリー構成を解析した。さらに、別個体あるいは別種の新世界ザル6個体(Ateles belzebuth, Aotus azarae, Saguinus Oedipus, Callithrix jacchus, Saimiri sciureus, Sapajus apella)、旧世界ザル9種9個体(Macaca mulatta, Macaca fuscata, Papio hamadryas, Papio anubis, Cercopithecus mitis, Chlorocebus sabaeus, Erythrocebus patas, Semnopithecus entellus, Colobus polykomos)、類人猿5種5個体(Pan troglodytes, Pan paniscus, Hylobates agilis, Symphalangus syndactylus, Nomascus concolor) に対しTCとNGS解析を追加した。日本人匿名化ゲノム試料6個体をプールした場合と個別の場合で上記遺伝子のTCを行い、NGS結果を比較した結果、プールしても得られる情報量に大きな遜色はないことを確認し、アフリカ系4集団(B.Pygmy, Hausa, M.Pygmy, Chagga)、ヨーロッパ系4集団(Adygei, Dane, Irish, Russian)、アジア系6集団(Aeta, Mamanwa, Batak, Tagalog, Manobo, Ryukyu)の各15個体に対しTCとNGSを行った。
新世界ザルや旧世界ザルの苦味受容体について、TAS2R16については種間の機能差が大きいことがわかった。また、旧世界ザルの甘味受容体について、コロブス類のTAS2R2/TAS2R3は糖類に対する反応がほとんど見られないことがわかった。

Research Progress Status

29年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

29年度が最終年度であるため、記入しない。

  • Research Products

    (30 results)

All 2018 2017 Other

All Int'l Joint Research (1 results) Journal Article (9 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 9 results,  Open Access: 5 results) Presentation (18 results) (of which Int'l Joint Research: 10 results,  Invited: 11 results) Remarks (2 results)

  • [Int'l Joint Research] University of Calgary/McGill University(Canada)

    • Country Name
      Canada
    • Counterpart Institution
      University of Calgary/McGill University
  • [Journal Article] Infant mortality in white-faced capuchins: The impact of alpha male replacements2017

    • Author(s)
      Brasington Lauren F.、Wikberg Eva C.、Kawamura Shoji、Fedigan Linda M.、Jack Katharine M.
    • Journal Title

      American Journal of Primatology

      Volume: 79 Pages: e22725~e22725

    • DOI

      10.1002/ajp.22725

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Trichromacy increases fruit intake rates of wild capuchins (Cebus capucinus imitator)2017

    • Author(s)
      Melin Amanda D.、Chiou Kenneth L.、Walco Emily R.、Bergstrom Mackenzie L.、Kawamura Shoji、Fedigan Linda M.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 114 Pages: 10402~10407

    • DOI

      10.1073/pnas.1705957114

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Discerning the Origins of the Negritos, First Sundaland People: Deep Divergence and Archaic Admixture2017

    • Author(s)
      Jinam Timothy A.、Phipps Maude E.、Aghakhanian Farhang、Majumder Partha P.、Datar Francisco、Stoneking Mark、Sawai Hiromi、Nishida Nao、Tokunaga Katsushi、Kawamura Shoji、Omoto Keiichi、Saitou Naruya
    • Journal Title

      Genome Biology and Evolution

      Volume: 9 Pages: 2013~2022

    • DOI

      10.1093/gbe/evx118

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 眼の起源と脊椎動物の色覚進化2017

    • Author(s)
      河村正二
    • Journal Title

      日本視能訓練士協会誌

      Volume: 46 Pages: 1~16

    • Peer Reviewed
  • [Journal Article] Evolution of Genes for Color Vision and the Chemical Senses in Primates2017

    • Author(s)
      Kawamura Shoji、Melin Amanda D.
    • Journal Title

      Evolution of the Human Genome I: The Genome and Genes (Saitou, N. ed.)

      Volume: 1 Pages: 181~216

    • DOI

      10.1007/978-4-431-56603-8_10

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Spectral Tuning Mechanism of Primate Blue-sensitive Visual Pigment Elucidated by FTIR Spectroscopy2017

    • Author(s)
      Katayama Kota、Nonaka Yuki、Tsutsui Kei、Imai Hiroo、Kandori Hideki
    • Journal Title

      Scientific Reports

      Volume: 7 Pages: 4904

    • DOI

      10.1038/s41598-017-05177-4

    • Peer Reviewed / Open Access
  • [Journal Article] Visual adaptation in Lake Victoria cichlid fishes: depth-related variation of color and scotopic opsins in species from sand/mud bottoms2017

    • Author(s)
      Terai Yohey、Miyagi Ryutaro、Aibara Mitsuto、Mizoiri Shinji、Imai Hiroo、Okitsu Takashi、Wada Akimori、Takahashi-Kariyazono Shiho、Sato Akie、Tichy Herbert、Mrosso Hillary D. J.、Mzighani Semvua I.、Okada Norihiro
    • Journal Title

      BMC Evolutionary Biology

      Volume: 17 Pages: 200

    • DOI

      10.1186/s12862-017-1040-x

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Co-Opted Megasatellite DNA Drives Evolution of Secondary Night Vision in Azara's Owl Monkey2017

    • Author(s)
      Koga Akihiko、Tanabe Hideyuki、Hirai Yuriko、Imai Hiroo、Imamura Masanori、Oishi Takao、Stanyon Roscoe、Hirai Hirohisa
    • Journal Title

      Genome Biology and Evolution

      Volume: 9 Pages: 1963~1970

    • DOI

      10.1093/gbe/evx142

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 味覚受容体の進化と多様性2017

    • Author(s)
      今井啓雄
    • Journal Title

      アグリバイオ

      Volume: 1 Pages: 89~91

    • Peer Reviewed
  • [Presentation] 霊長類進化の視点から考えるヒト色覚の多様性の意味2018

    • Author(s)
      河村正二
    • Organizer
      第123回日本解剖学会総会・全国学術集会:シンポジウム 「視る」を観る~眼球の解剖と機能の多様性~、日本医科大学武蔵境校舎・日本獣医生命科学大学、武蔵野市、東京、3月29日
    • Invited
  • [Presentation] 新世界ザルの嗅覚・味覚受容体とその採食果実の匂い成分を切り口にした霊長類の感覚進化の解明2018

    • Author(s)
      河村正二
    • Organizer
      日本農芸化学会2018年度大会:シンポジウム 化学で進化・多様性を考える、名城大学 天白キャンパス、名古屋、3月18日
    • Invited
  • [Presentation] Sensory genetics of primates to fish2018

    • Author(s)
      Kawamura, S.
    • Organizer
      Department of Anthropology and Archeology Seminar, University of Calgary, Calgary, Canada, March 12
    • Int'l Joint Research / Invited
  • [Presentation] Evolutionary genetics of vision and chemical sense in humans, wild primates and fish2018

    • Author(s)
      Kawamura, S.
    • Organizer
      The International Alliance Research Internship (IARI) Symposium 4th Workshop in Biosciences, ENS de Lyon, Cancer Research Centre of Lyon, INSA Lyon, Lyon, France, February 27 - March 1
    • Int'l Joint Research / Invited
  • [Presentation] Divergent Evolution of Olfactory and Taste Receptor Repertoire in New World Monkeys2018

    • Author(s)
      Kawamura, S.
    • Organizer
      The 62nd Primates Conference, Japan Monkey Centre, Inuyama, January 27 - 28
    • Int'l Joint Research / Invited
  • [Presentation] Taste receptors and feeding behaviors as a target of molecular biology of primates2018

    • Author(s)
      Hiroo Imai
    • Organizer
      International symposium on Genomics and Cell Biology of Primates. March 24, 2018
    • Int'l Joint Research / Invited
  • [Presentation] Vision and chemical sense in humans, wild primates and fish2017

    • Author(s)
      Kawamura, S.
    • Organizer
      Zhejiang University- The University of Tokyo Joint Symposium 2017, The University of Tokyo, Kashiwa Campus Library, Media Hall, November 29 - 30
    • Int'l Joint Research
  • [Presentation] Red-green colour vision increases fruit intake rates of wild capuchins (Cebus capucinus imitator)2017

    • Author(s)
      Melin, A. D., Chiou, K. L., Walco, E. R., Kawamura, S. and Fedigan, L. M.
    • Organizer
      Canadian Association for Physical Anthropology 45th Annual Meeting, Matrix Hotel, Edmonton, Alberta, Canada, October 25th - 28th
    • Int'l Joint Research
  • [Presentation] 新世界ザルにおける化学物質感覚の多様化進化2017

    • Author(s)
      河村正二、直井工、林真広、蘆野龍一、今井啓雄、新村芳人、東原和成、Melin, A. D.
    • Organizer
      第89回日本遺伝学会大会、岡山大学 津島キャンパス、岡山市、9月13-16日
  • [Presentation] Toward examination of genetic difference on color vision, olfaction and taste between negritos and non-negritos of the Philippines2017

    • Author(s)
      河村正二
    • Organizer
      ADRC研究報告会、中央工学校「南ヶ丘倶楽部」、長野県軽井沢町、8月28日~29日
  • [Presentation] グッピーにおいて錐体オプシン遺伝子の多型が色覚およびメスの配偶者選好性に与える影響2017

    • Author(s)
      酒井祐輔、河村正二、河田雅圭
    • Organizer
      第19回日本進化学会大会、京都大学吉田キャンパス、京都、8月24-26日
  • [Presentation] 新世界ザルにおける嗅覚及び味覚受容体の多様化進化2017

    • Author(s)
      河村正二、直井工、林真広、蘆野龍一、今井啓雄、新村芳人、東原和成、Melin, A. D.
    • Organizer
      第33回日本霊長類学会大会、コラッセふくしま、福島市、7月15-17日
  • [Presentation] Divergent evolution of olfactory and taste receptor repertoire in New World monkeys with diverse color vision types and feeding habits2017

    • Author(s)
      Kawamura, S., Naoi, T., Hayashi, M., Ashino, R., Niimura, Y., Touhara, K., Imai, H., Veilleux, C. C., Garrett, E. C., Melin, A. D.
    • Organizer
      Annual Meeting of the Society for Molecular Biology and Evolution 2017 (SMBE 2017), JW Marriott hotel, Austin, USA, July 2nd - 6th
    • Int'l Joint Research
  • [Presentation] 霊長類進化の視点で見たヒトの色覚多様性の意味2017

    • Author(s)
      河村正二
    • Organizer
      朝日カルチャーセンター 朝日JTB・交流文化塾 首都圏本部横浜教室:研究最前線 人類はどのように進化したのか、ルミネ横浜8階(横浜駅東口)、横浜、6月10日
    • Invited
  • [Presentation] Functional diversity of primate GPCR-type sensory receptors2017

    • Author(s)
      Hiroo Imai
    • Organizer
      International Symposium on Biophysics of Rhodopsin、京都、2017.5.12
    • Int'l Joint Research / Invited
  • [Presentation] 霊長類の中でのヒトの特徴‐ゲノムや細胞でどこまでチャレンジできるか‐2017

    • Author(s)
      今井啓雄
    • Organizer
      第33回日本霊長類学会大会自由集会、福島、2017.7.15
    • Invited
  • [Presentation] Functional and behavioral analysis of primate bitter and sweet taste receptors2017

    • Author(s)
      Hiroo Imai, Nami Suzuki-Hashido, Emiko Nishi, Takashi Hayakawa, Hirohisa Hirai, Laurentia Purba, Kanthi Widayati, Bambang Suryobroto
    • Organizer
      The 16th International Symposium on Molecular and Neural Mechanisms of Taste and Olfactory Perception, November 3-4, 2017, Fukuoka
    • Int'l Joint Research / Invited
  • [Presentation] Receptor-ligand interaction in various types of primates2017

    • Author(s)
      Hiroo Imai
    • Organizer
      Kyoto International Symposium on Virus-Host Coevolution /Human-Nature Interplacement Life Science. November 13, 2017
    • Int'l Joint Research / Invited
  • [Remarks] 河村正二研究室ホームページ

    • URL

      http://www.jinrui.ib.k.u-tokyo.ac.jp/kawamura-home.html

  • [Remarks] Shoji Kawamura Lab Home Page

    • URL

      http://www.jinrui.ib.k.u-tokyo.ac.jp/kawamura-home-E.html

URL: 

Published: 2018-12-17  

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