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2017 Fiscal Year Final Research Report

Fast genome-wide detection of RNA genes using coarse-grained structural information

Research Project

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Project/Area Number 15K00401
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Life / Health / Medical informatics
Research InstitutionOsaka University (2016-2017)
Kyoto University (2015)

Principal Investigator

KATO Yuki  大阪大学, 医学系研究科, 助教 (10511280)

Project Period (FY) 2015-04-01 – 2018-03-31
KeywordsRNA / 遺伝子発見 / 2次構造
Outline of Final Research Achievements

For the purpose of incomplete genomic annotation of non-coding RNAs, here we presented a computational method for detecting structured RNA genes that two organisms share in common in their genomic sequences, which aims to compare their coarse-grained structures. Computational experiments with both simulated and authentic chromosomal data indicate that the proposed method achieves high sensitivity for the detection of structured RNA genes. We conclude that our approach can be useful as a comparative genomic pre-screening of structured RNAs.

Free Research Field

バイオインフォマティクス

URL: 

Published: 2019-03-29  

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