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2007 Fiscal Year Final Research Report Summary

Electronic Function Simulation of Surface Coordination Space

Research Project

Project/Area Number 16074213
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionKumamoto University

Principal Investigator

SUGIMOTO Manabu  Kumamoto University, Graduate School of Science and Technology, Associate Professor (80284735)

Project Period (FY) 2004 – 2007
KeywordsCoordination Space / Quantum Chemistry / Thecoretical Chemistry / Electronic Structure / Density Functional Theory / Coordinalion Chemistry / Metal Complex / Bioinorganic Chemistry
Research Abstract

Electronic structure methods were applied to theoretically investigate electronic functions of surface-coordination space. In this project, we studied current-voltage (I-V) characteristics of coordination compounds between metal electrodes, topological analysis of molecular surfaces, optical properties of CdS nanoclusters, electrochemical reductive elimination of pyridine thiol on the Au Surface. We applied the nonequilibrium Green's function theory to the I-V characteristics of Pt acetylide compounds between two metal electrodes. The one-dimensional chain electrodes of Au and Li were investigated. For the Au chain electrode, we predicted that the electric current is appreciably enhanced. This is due to the fact that the Fermi level of the electrode is very close to the HOMO level of the Pt compound. On the molecular surface analysis, we developed a new method to characterize topological features of molecular surfaces. In our approach, we introduce an ion as a probe. The molecular surface is defined on the basis of the interaction energy between the probe ion and the target molecule. By using this computational method, the shape of the inner surface of a cyclic crown ether was investigated. On the CdS nanoclusters, we carried out electronically excited state calculations to investigate how the electronic spectra were influenced by the surface coordination by organic molecules.
On the electrochemical reductive elimination, we showed that the elimination voltage is well correlated to the Au-S binding energy of a surface. In addition to these works, some collaborative studies were carried out: (i) electronic structure and optical properties of metal cluster compounds, Structures of Fe-salen complexes were computationally investigated. The Cu model compounds for the nitride reductase were investigated to understand the coordination geometries and binding energy between Cu and NO2.

  • Research Products

    (10 results)

All 2007 2006 2005

All Journal Article (8 results) (of which Peer Reviewed: 4 results) Presentation (2 results)

  • [Journal Article] Electronic Response Analysis on Supramolecular Functions. Electronic-Structure Modulation and Molecular Recognition2006

    • Author(s)
      M. Sugimoto
    • Journal Title

      Lecture Series on Computer and Computational Sciences 6

      Pages: 472-481

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Trigonal-Bipyramidal Geometry Induced by an External Water Ligand in a Sterically Hindered Iron Salen Complex, Related to the Active Site of Protocatechuate 3, 4-Dioxygenase2006

    • Author(s)
      T. Kurahashi, K. Oda, M. Sugimoto, T. Ogura, H. Fujii
    • Journal Title

      Inorganic Chemistry 45

      Pages: 7709-7721

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Thermnochromic Triangular [MCo2] (M =Rh, Ir, Ru)Clusters Containing a Planar Metalladithiolene Ring in η3 Coordination2006

    • Author(s)
      N. Nakagawa, T. Yamada, M. Murata, M, Sugimoto, H. Nishihara
    • Journal Title

      Inorganic Chemistry 45

      Pages: 14-16

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Electronic Response Analysis on Supramolecular Functions. Electronic-Structure Modulation and Molecular Recognition2006

    • Author(s)
      M. Sugiaoto
    • Journal Title

      Lecture Series on Computer and Computational Sciences 6

      Pages: 472-481

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Trigonal-Bipyramidal Geometry Induced by an External Water Ligand in a Sterically Hindered Iron Salen Complex, Related to the Active Site of Protocatechuate 3, 4-Dioxygenase2006

    • Author(s)
      T Kurahashi, K. Oda, M. Sugimoto, T. Ogura, H. Fujii
    • Journal Title

      Inorg. Chem. 45

      Pages: 7709-7721

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Thermochromic Triangular [HCo2] (M = Rh, Ir, Ru) Clusters Containing a Planar Metalladithiolene Ring in ・3 Coordination2006

    • Author(s)
      N. Nakagawa, T. Yamada, M. Murata, M. Sugimoto, H. Nishihara
    • Journal Title

      Inorg. Chem. 45

      Pages: 14-16

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] CuI and CuII complexes containing nitrite and tridentate aromatic amine ligand as models for the substrate-binding type-2 Cu site of nitrite reductase2005

    • Author(s)
      H. Yokoyama, K. Yamaguchi, M. Sugimoto, S. Suzuki
    • Journal Title

      European Journal of Inorganic Chemistry

      Pages: 1435-1441

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] CuI and CuII complexes containing nitrite and tridentate aromatic amine ligand as models for the substrate-binding type-2 Cu site of nitrite reductase2005

    • Author(s)
      H. Yokoyama, K. Yamaguchi, M. Sugimoto, S. Suzuki
    • Journal Title

      Eur. J. of Inorg. Chem.

      Pages: 1435-1441

    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Computational Shape Analysis for Designing Host and Guest Molecules in Molecular Storage2007

    • Author(s)
      M. Sugimoto
    • Organizer
      1st Asian Conference on Coordination Chemistry
    • Place of Presentation
      愛知県岡崎市
    • Year and Date
      2007-07-31
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Computational Shape Analysis for Designing Host and Guest Molecules in Molecular Storage2007

    • Author(s)
      M. Sugimoto
    • Organizer
      1st Asian Conference on Coordination Chemistry (ACCC2007)
    • Place of Presentation
      Okazaki
    • Year and Date
      2007-07-31
    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2010-06-09  

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