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2008 Fiscal Year Final Research Report

Induction mechanism of endoplasmic-reticulum-derived organelle

Research Project

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Project/Area Number 16085203
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyoto University

Principal Investigator

HARA-NISHIMURA Ikuko  Kyoto University, 大学院・理学研究科, 教授 (00241232)

Project Period (FY) 2004 – 2008
Keywordsシロイヌナズナ / ERボディ / 傷害応答 / 小胞体 / bグルコシダーゼ / PYK10 / NAI1 / NAI2
Research Abstract

We identified a distinct type of ER-derived structure as a new organelle in Arabidopsis, which we have designated the ER body. The spindle-shaped, 5-10 μm long ER bodies are easily detected in Arabidopsis expressing ER-targeted GFP. ER bodies are uniformly distributed throughout the epidermis of cotyledons and hypocotyls in young seedlings. Interestingly, wounding or treatment with the wound hormone jasmonate induces the accumulation of ER bodies in adult leaves. This suggests that the ER body is involved in pest/pathogen resistance in Arabidopsis. The ER bodies in Arabidopsis seedlings accumulate PYK10 protein, which bears the ER retention signal KDEL. The Arabidopsis nai1 mutant lacks ER bodies. The NAI1 gene encodes a basic helix-loop-helix-type transcription factor. NAI1 regulates the expression of PYK10, JAL22, JAL23, JAL31, JAL33, PBP1/JAL30, GLL2 and GLL25. PYK10 forms a large complex with JALs and GLLs in cells that are disrupted. JALs and GLLs regulate the size of the PYK10 complex and may regulate its substrate specificity. As NAI1 deficiency causes the loss of ER bodies, NAI1 may regulate unknown factors that are responsible for the formation of the ER body.

  • Research Products

    (53 results)

All 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article (14 results) (of which Peer Reviewed: 14 results) Presentation (31 results) Book (4 results) Remarks (3 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] A novel membrane fusion-mediated plant immunity against bacterial pathogens.2009

    • Author(s)
      Hatsugai N., Iwasaki S., Tamura K., Kondo M., Fuji K., Ogasawara K., Nishimura M., Hara-Nishimura I.
    • Journal Title

      Genes Dev. 23

      Pages: 2496-2506

    • Peer Reviewed
  • [Journal Article] GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 Are Required for Maintenance of Endoplasmic Reticulum Morphology in Arabidopsis thaliana.2009

    • Author(s)
      Nakano RT., Matsushima R., Ueda H., Tamura K., Shimada T., Li L., Hayashi Y., Kondo M., Nishimura M., Hara-Nishimura I.
    • Journal Title

      Plant Cell. 21

      Pages: 3672-3685

    • Peer Reviewed
  • [Journal Article] Quantitative Analysis of ER Body Morphology in an Arabidopsis Mutant.2009

    • Author(s)
      Nagano AJ., Maekawa A., Nakano RT., Miyahara M., Higaki T., Kutsuna N., Hasezawa S., Hara-Nishimura I.
    • Journal Title

      Plant Cell Physiol. 50

      Pages: 2015-2022

    • Peer Reviewed
  • [Journal Article] Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana.2008

    • Author(s)
      Nagano AJ., Fukao Y., Fujiwara M., Nishimura M., Hara-Nishimura I.
    • Journal Title

      Plant Cell Physiol. 49

      Pages: 969-980

    • Peer Reviewed
  • [Journal Article] AtMap1: a DNA microarray for genomic deletion mapping in Arabidopsis thaliana.2008

    • Author(s)
      Nagano AJ., Fukazawa M., Hayashi M., Ikeuchi M., Tsukaya H., Nishimura M., Hara-Nishimura I.
    • Journal Title

      Plant J. 56

      Pages: 1058-1065

    • Peer Reviewed
  • [Journal Article] Arabidopsis KAM2/GRV2 Is required for proper endosome formation and functions in vacuolar sorting and determination of the embryo growth axis.2007

    • Author(s)
      Tamura, K., Takahashi, H., Kunieda, T., Fuji, K., Shimada, T., Hara-Nishimura, I.
    • Journal Title

      Plant Cell 19

      Pages: 320-332

    • Peer Reviewed
  • [Journal Article] AtVAM3 is required for normal specification of idioblasts, myrosin cells.2006

    • Author(s)
      Ueda, H., Nishiyama, C., Shimada, T., Koumoto, Y., Hayashi, Y., Kondo, M., Takahashi, T., Ohtomo, I., Nishimura, M., Hara-Nishimura, I.
    • Journal Title

      Plant Cell Physiol. 47

      Pages: 164-175

    • Peer Reviewed
  • [Journal Article] MAIGO2 is involved in exit of seed storage proteins from the endoplasmic reticulum in Arabidopsis thaliana.2006

    • Author(s)
      Li, L., Shimada, T., Takahashi, H., Ueda, H., Fukao, Y., Kondo, M., Nishimura, M., Hara-Nishimura, I.
    • Journal Title

      Plant Cell 18

      Pages: 3535-3547

    • Peer Reviewed
  • [Journal Article] KATAMARI1/MUR3 is a novel Golgi membrane protein that is required for endomembrane organization in Arabidopsis.2005

    • Author(s)
      Tamura, K., Shimada, T., Kondo, M., Nishimura, M., Hara-Nishimura, I.
    • Journal Title

      Plant Cell 17

      Pages: 1764-1776

    • Peer Reviewed
  • [Journal Article] Endosomal proteases facilitate the fusion of endosomes with vacuoles at the final step of the endocytotic pathway.2005

    • Author(s)
      Yamada, K., Fuji, K., Shimada, T., Nishimura, M., Hara-Nishimura, I.
    • Journal Title

      Plant J. 41

      Pages: 888-898

    • Peer Reviewed
  • [Journal Article] Activation of an ER-body-localized beta-glucosidase via a cytosolic binding partner in damaged tissues of Arabidopsis thaliana.2005

    • Author(s)
      Nagano AJ, Matsushima R, Hara-Nishimura I.
    • Journal Title

      Plant Cell Physiol. 46

      Pages: 1140-1148

    • Peer Reviewed
  • [Journal Article] Diversity and functions of ER-derived compartments in plants: Are these compartments specific to plant cells?2004

    • Author(s)
      Hara-Nishimura, I., Matsushima, R., Shimada, T., Nishimura, M.
    • Journal Title

      Plant Physiol. 136

      Pages: 3435-3439

    • Peer Reviewed
  • [Journal Article] NAI1 gene that encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of a novel ER-derived structure, the ER body.2004

    • Author(s)
      Matsushima, R., Fukao, Y., Nishimura, M., Hara-Nishimura, I.
    • Journal Title

      Plant Cell 16

      Pages: 1536-1549

    • Peer Reviewed
  • [Journal Article] Endoplasmic reticulum-resident proteins are constitutively transported to vacuoles for degradation.2004

    • Author(s)
      Tamura, K., Yamada, K., Shimada, T., Hara-Nishimura, I.
    • Journal Title

      Plant J. 39

      Pages: 393-402

    • Peer Reviewed
  • [Presentation] Dynamic Nuclear Envelope in Arabidopsis.2009

    • Author(s)
      Tamura K.
    • Organizer
      XI European Endomembrane Meeting
    • Place of Presentation
      Hotel President, Lecce, Italy
    • Year and Date
      2009-09-22
  • [Presentation] Plant Defense Strategies Using Vacuoles and Endomembranes.2009

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      Premium International Symposium "Perspectives of Plant Science in the 21st Century " In Celebration of the 50th Anniversary Meeting of JSPP.
    • Place of Presentation
      Nagoya University, Nagoya, Japan
    • Year and Date
      2009-03-23
  • [Presentation] オルガネラ定量解析システムによるERボディ形態異常変異の解析.2009

    • Author(s)
      永野惇
    • Organizer
      第50回日本植物生理学会年会
    • Place of Presentation
      名古屋大学, 名古屋市
    • Year and Date
      2009-03-23
  • [Presentation] 小胞体の形態と細胞内分布に異常を示すendoplasmic reticulum morphology (ermo)変異体の解析.2009

    • Author(s)
      中野亮平
    • Organizer
      第50回日本植物生理学会年会
    • Place of Presentation
      名古屋大学, 名古屋市
    • Year and Date
      2009-03-21
  • [Presentation] 小胞体の流動機構の解明~ミオシンに着目して~.2009

    • Author(s)
      上田晴子
    • Organizer
      第50回日本植物生理学会年会
    • Place of Presentation
      名古屋大学, 名古屋市
    • Year and Date
      2009-03-21
  • [Presentation] シロイヌナズナの病害抵抗性における細胞内輸送の関与.2009

    • Author(s)
      運天修
    • Organizer
      第50回日本植物生理学会年会
    • Place of Presentation
      名古屋大学, 名古屋市
    • Year and Date
      2009-03-21
  • [Presentation] 高等植物における細胞核の形作りの分子機構.2009

    • Author(s)
      田村謙太郎
    • Organizer
      第11回植物オルガネラワークショップ
    • Place of Presentation
      名古屋大学, 名古屋市
    • Year and Date
      2009-03-20
  • [Presentation] endoplasmic reticulum morphology (ermo) mutants of Arabidopsis thaliana develop a number of novel ER-derived structures in the cells.2008

    • Author(s)
      Ryohei Thomas Nakano
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      ポートピアホテル, 神戸市
    • Year and Date
      2008-12-11
  • [Presentation] Plant Vacuoles as a Key Player of Two Defense Strategies against Invading Viral and Bacterial Pathogens.2008

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      シンポジウム「オルガネラダイナミクスー形成・分解と機能制御」, ポートピアホテル, 神戸市
    • Year and Date
      2008-12-09
  • [Presentation] 遺伝子発現量多型と全ゲノム関連解析2008

    • Author(s)
      永野惇
    • Organizer
      第40回種生物学シンポジウム, デュープレックスセミナーホテル
    • Place of Presentation
      守谷市
    • Year and Date
      2008-12-07
  • [Presentation] オルガネラ定量解析から見えること~ER bodyを例にして2008

    • Author(s)
      永野惇
    • Organizer
      第72回日本植物学会大会
    • Place of Presentation
      高知大学, 高知市
    • Year and Date
      2008-09-26
  • [Presentation] Two different types of vacuole-mediated defense strategies against virus and bacterial pathogens.2008

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      植物微生物研究会・第18回研究交流会
    • Place of Presentation
      奈良女子大学, 奈良市
    • Year and Date
      2008-09-18
  • [Presentation] Different Vacuole- Mediated-Defense Strategies Against Invading Viral and Bacterial Pathogens.2008

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      The 55th NIBB Conference "Frontiers of Plant Science in the 21st Century".
    • Place of Presentation
      Okazaki Conference Center, Okazaki, Japan
    • Year and Date
      2008-09-13
  • [Presentation] 植物の感染防御機構における細胞内輸送系の関与.2008

    • Author(s)
      初谷紀幸
    • Organizer
      第49回日本植物生理学会年会
    • Place of Presentation
      札幌コンベンションセンター, 札幌市
    • Year and Date
      2008-03-20
  • [Presentation] Vacuolar sorting and vacuolar processing systems in higher plants.2007

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      Plant Cell Biology Conference, Max-Planck-Institute
    • Place of Presentation
      Cologne, Germany
    • Year and Date
      20070904-20070906
  • [Presentation] Molecular analyses of endomembrane organisaiton using Arabidopsis mutants.2007

    • Author(s)
      Tamura, K.
    • Organizer
      European Endomembrane Club-2007 Meeting
    • Place of Presentation
      Oxford, UK
    • Year and Date
      20070829-20070831
  • [Presentation] Vacuolar sorting mechanism in plants.2007

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      19th FAOBMB Conference
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      20070528-20070530
  • [Presentation] 植物の液胞選別輸送の分子機構.2007

    • Author(s)
      西村いくこ
    • Organizer
      日本分子生物学会ワークショップ「タンパク質の品質管理とオルガネラダイナミクス」
    • Place of Presentation
      パシフィコ横浜, 横浜市
    • Year and Date
      2007-12-12
  • [Presentation] 高等植物における細胞核の機能解析.2007

    • Author(s)
      田村謙太郎
    • Organizer
      第7回核ダイナミクス研究会
    • Place of Presentation
      北海道大学, 札幌
    • Year and Date
      2007-09-26
  • [Presentation] Jacalin related lectinとGDSL lipase like proteinはERボディ局在β-グルコシダーゼ複合体のサイズを制御する2007

    • Author(s)
      永野惇
    • Organizer
      第48回日本植物生理学会年会
    • Place of Presentation
      松山大学, 松山市
    • Year and Date
      2007-03-28
  • [Presentation] Vacuolar processing enzyme (VPE): an executor of vacuole-mediated cell death in plants.2006

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress. Symposium "Plant Development and Cell Death: View from Cell Biology".
    • Place of Presentation
      Kyoto International Conference Center, Kyoto
    • Year and Date
      20060618-20060623
  • [Presentation] Involvement of vacuolar processing enzyme (VPE) in plant cell death.2006

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      The 53rd NIBB Conference "Dynamic Organelles in Plants".
    • Place of Presentation
      Okazaki Conference Center, Okazaki
    • Year and Date
      20060614-20060617
  • [Presentation] Vacuolar processing enzyme responsible for programmed cell death in plants.2006

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      The NAIST COE Symposium "Frontiers in Plant Immunity Research".
    • Place of Presentation
      Nara Instittute of Science and Technlogy, Nara
    • Year and Date
      2006-06-24
  • [Presentation] シロイヌナズナAtVAM3 (SNAREタンパク質VAM3ホモログ)はミロシン細胞の分化に関与する2006

    • Author(s)
      上田晴子
    • Organizer
      第47回日本植物生理学会年会
    • Place of Presentation
      筑波大学, つくば市
    • Year and Date
      2006-03-21
  • [Presentation] ERボディ局在β-グルコシダーゼの活性に影響を与えるサイトゾル型Jacalin like lectinの探索2006

    • Author(s)
      永野惇
    • Organizer
      第47回日本植物生理学会年会
    • Place of Presentation
      筑波大学, つくば市
    • Year and Date
      2006-03-20
  • [Presentation] シロイヌナズナに存在するER bodyの形成過程の解析2006

    • Author(s)
      前川晃徳
    • Organizer
      第47回日本植物生理学会年会
    • Place of Presentation
      筑波大学, つくば市
    • Year and Date
      2006-03-20
  • [Presentation] 植物の生体防御とオルガネラ分化. 植物の環境適応戦略としてのオルガネラ分化2005

    • Author(s)
      西村いくこ
    • Organizer
      第46回日本植物生理学会年会シンポジウム
    • Place of Presentation
      新潟コンベンションセンター, 新潟市
    • Year and Date
      2005-03-26
  • [Presentation] 植物のプログラム細胞死を制御する液胞プロセシング酵素VPE, 植物の防御機構と過敏感反応シグナル伝達2005

    • Author(s)
      西村いくこ
    • Organizer
      第46回日本植物生理学会年会シンポジウム
    • Place of Presentation
      新潟コンベンションセンター, 新潟市
    • Year and Date
      2005-03-26
  • [Presentation] ERボディに局在するβ-グルコシダーゼPYK10の解析.2005

    • Author(s)
      永野惇
    • Organizer
      第46回日本植物生理学会年会
    • Place of Presentation
      新潟コンベンションセンター, 新潟市
    • Year and Date
      2005-03-24
  • [Presentation] Vacuolar processing enzymes involved in plant programmed cell death.2004

    • Author(s)
      Hara-Nishimura, I.
    • Organizer
      Gordon Research Conference "Plant Senescence and cell death"
    • Place of Presentation
      Mt. Holleyoke, USA
    • Year and Date
      20040626-20040703
  • [Presentation] シロイヌナズナkatamari1変異体では細胞内膜系の構造が異常になるー細胞内膜系の構造異常を示すシロイヌナズナkatamari1変異体2004

    • Author(s)
      田村謙太郎
    • Organizer
      第27回日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアホテル, 神戸市
    • Year and Date
      2004-12-09
  • [Book] プラントミメティックスー植物に学ぶ(甲斐昌一, 他監修, 植物の小胞体由来の構造体)2006

    • Author(s)
      松島良, 嶋田知生, 西村いくこ
    • Total Pages
      293-298
    • Publisher
      NTS
  • [Book] 植物細胞工学シリーズ22「新版植物の細胞を観る実験プロトコール」(福田裕穂他監修, 液胞の可視化と細胞内膜系異常を示す変異体の単離)2006

    • Author(s)
      田村謙太郎, 西村いくこ
    • Total Pages
      221-224
    • Publisher
      秀潤社
  • [Book] The Plant Endoplasmic Reticulum.(Ed. By D. Robinson)2006

    • Author(s)
      Hara-Nishimura, I., Shimada, T.
    • Total Pages
      141-154
    • Publisher
      Springer Verlag
  • [Book] 植物細胞工学シリーズ20「新版 植物ホルモンのシグナル伝達」(ジャスモン酸により誘導される小胞体由来の新規構造体., 細胞工学別冊)2004

    • Author(s)
      松島良, 西村いくこ
    • Total Pages
      209-212
    • Publisher
      秀潤社
  • [Remarks] 朝日新聞「細胞小器官に必須遺伝子」2008年11月7日

  • [Remarks] 日経産業新聞「防虫力つける遺伝子」2008年10月23日

  • [Remarks] 科学新聞「植物の新規細胞小器官"ERボディ"の形成機構」2008年10月3日

  • [Patent(Industrial Property Rights)] erボディ形成能を有する遺伝子およびその利用2010

    • Inventor(s)
      山田健志, 西村幹夫, 西村いくこ
    • Industrial Property Rights Holder
      基礎生物学研究所, 京都大学
    • Industrial Property Number
      特願2010-068055
    • Filing Date
      2010-03-24
    • Acquisition Date
      2010-03-24

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Published: 2011-06-18   Modified: 2016-04-21  

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