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2006 Fiscal Year Final Research Report Summary

Generation of Tailor-made Biocatalysts Using Immune System.

Research Project

Project/Area Number 16350091
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionOsaka Prefecture University

Principal Investigator

FUJII Ikuo  Osaka Prefecture University, Graduate School of Science, Professor, 理学系研究科, 教授 (70189984)

Co-Investigator(Kenkyū-buntansha) TSUMURAYA Takeshi  Osaka Prefecture University, Graduate School of Science, Instructor, 理学系研究科, 助手 (00372855)
Project Period (FY) 2004 – 2006
Keywordscatalytic antibody / transition-state analog / antigen / monoclonal antibody / hybridoma / immunization / co-factor
Research Abstract

From the first report of catalytic antibodies in 1986, a variety of the antibodies has been generated and found to catalyze chemical reactions from peri-cyclic reactions to amido-bond hydrolyses. Most of them are elicited by immunization of transition-state analogs. However, unfortunately, the catalytic activities are not sufficient. Therefore, we take advantage of catalytic power of cofactors. In this work, we aim to incorporate synthetic cofactors into antibody-combining sites to generate catalytic antibodies.
A bi-functional hapten was designed and synthesized to elicit both substrate and cofactor binding sites in antibody-combining sites. After immunization to mice with the carrier protein (KLH)-hapten conjugate, we isolated 50 monoclonal antibodies by hybridoma technology. Of the antibodies, 22 were found to be catalytic in acyl-transfer reactions of p-nitrophenol ethyl esters with synthetic co-factors attaching alcohol, amino, and sulfur groups. The kinetic parameters (K_m, VK_<max>,k_<cat> ) for the most active antibodies (27C1 and 25E2) were examined in detail. Furthermore, antibody 27C1 also catalyzed elimination reactions of β-fluoroketone to give the corresponding enone when the synthetic co-factor attaching carboxylate was used. In this work, we have demonstrated generating catalytic antibodies with synthetic cofactors and controlling the catalytic activity by changing the co-factors. Because antibodies can be generated virtually any molecule of interest, combination of antibodies and co-factors should lead to a new class of biocatalysts with tailor-made specificity and reactivity.

  • Research Products

    (35 results)

All 2007 2006 2005 2004

All Journal Article (34 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Structural basis of the transition-state stabilization in antibody-catalyzed hydrolysis2007

    • Author(s)
      Masayoshi Sakakura
    • Journal Title

      Journal of Molecular Biology 367

      Pages: 133-147

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Thermodynamic and Structural Bases for Transition-state Stabilization in an Antibody-catalyzed Hydrolysis2007

    • Author(s)
      Masayuki Oda
    • Journal Title

      Journal of Molecular Biology 369

      Pages: 198-209

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] 進化分子工学による新機能生体機能分子の設計と創出2007

    • Author(s)
      藤井 郁雄
    • Journal Title

      化学と生物 45

      Pages: 96-103

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] ファージ・ディスプレイ法による抗体の分子進化とその応用2007

    • Author(s)
      藤井 郁雄
    • Journal Title

      YAKUGAKU ZASSHI 127

      Pages: 91-99

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Structural basis of the transition-state stabilization in antibody-catalyzed hydrolysis2007

    • Author(s)
      Masayoshi Sakakura, Hideo Takahashi, Nobuhisa Shimba, Ikuo Fujii Ichio Shimada
    • Journal Title

      J.Mol.Biol. 367

      Pages: 133-147

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Thermodynamic and Structural Bases for Transition-state Stabilization in an Antibody-catalyzed Hydrolysis2007

    • Author(s)
      Masayuki Oda, Nobutoshi Ito, Takeshi Tsumuraya, Kayo Suzuki, Masayoshi Sakakura, Ikuo Fujii
    • Journal Title

      J.Mol.Biol. 369

      Pages: 198-209

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Generation of a Nobel Class of Biofunctional Molecules in Directed Evolution2007

    • Author(s)
      Ikuo Fujii
    • Journal Title

      Kagaku to Seibutsu 45

      Pages: 96-103

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Directed Evolution of Antibody Molecules in Phage-displayed Combinatorial Libraries2007

    • Author(s)
      Ikuo Fujii
    • Journal Title

      YAKUGAKU ZASSHI 127

      Pages: 91-99

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Production of monoclonal antibodies for sandwich immunoassay detection of ciguatoxin 51-hydroxyCTX3C2006

    • Author(s)
      Takeshi Tsumuraya
    • Journal Title

      Toxicon 48

      Pages: 287-294

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Molecular Mechanisms of Improvement of Hydrolytic Antibody6D9 by Site-Directed Mutagenesis2006

    • Author(s)
      Naoko Takahashi-Ando
    • Journal Title

      J. Biochem. 140

      Pages: 1-7

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Luciferase Antibody2006

    • Author(s)
      Takeshi Tsumuraya
    • Journal Title

      Peptide Science

      Pages: 128-129

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] 分子進化工学による生体機能分子の設計と創出2006

    • Author(s)
      藤井 郁雄
    • Journal Title

      日本化学会生体機能関連化学部会News Letter 20

      Pages: 10-13

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] コンビナトリアル・バイオエンジニアリングによるテーラーメイド機能性抗体の創出2006

    • Author(s)
      円谷 健, 藤井郁雄
    • Journal Title

      生物工学会誌 84

      Pages: 316-318

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Production of monoclonal antibodies for sandwich immunoassay detection of ciguatoxin 51-hydroxyCTX3C2006

    • Author(s)
      Takeshi Tsumuraya, Ikuo Fujii, Masayuki Inoue, Atsushi Tatami, Keisuke Miyazakij, Masahiro Hirama
    • Journal Title

      Toxicon 48

      Pages: 287-294

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Molecular Mechanisms of Improvement of Hydrolytic Antibody6D9 by Site-Directed Mutagenesis2006

    • Author(s)
      Naoko Takahashi-Ando, Kazuko Shimazaki, Hiroyuki Kakinuma, Ikuo Fujii
    • Journal Title

      J.Biochem. 140

      Pages: 1-7

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Luciferase Antibody2006

    • Author(s)
      Takeshi Tsumuraya, Chun Wu, Hideshi Nakamura Satoshi Inouyhe, Ikuo Fujii
    • Journal Title

      Peptide Science

      Pages: 128-129

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Generation of a Nobel Class of Biofunctional Molecules in Directed Evolution2006

    • Author(s)
      Ikuo Fujii
    • Journal Title

      News Letter, Division of Biofunictional chemistry, The Chemical Society of Japan 20

      Pages: 10-13

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Generation of a Tailor-Made Funictional Antibodies by Combinatorial Bioengineering2006

    • Author(s)
      Takeshi Tsumuraya, Ikuo Fujii
    • Journal Title

      Seibutsu-Kogaku Kaishi 84

      Pages: 316-318

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A Free Energy Calculation Study of the Effect of H->F Substitution on Binding Affinity in Ligand-Antibody Interactions2005

    • Author(s)
      Minoru Saito, Isao Okazaki, Masayuki Oda, Ikuo Fujii
    • Journal Title

      J. Comput. Chem. 26

      Pages: 272-282

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Site-Directed Mutagenesis Study of the Antibody 2D7 which Catalyzes a Reaction for Insertion of Cu^<2+> into Mesoporphyrin2005

    • Author(s)
      Naoki Hosomi
    • Journal Title

      Journal of Bioscience and Bioengineering 99

      Pages: 222-229

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Backbone resonance assignments for the Fv fragment of catalytic antibody 6D9 complexed with a transition state analogue2005

    • Author(s)
      Masayuki Sakakura
    • Journal Title

      Journal of Biomolecular NMR 33

      Pages: 282

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Free Energy Calculation Study of the Effect of H-*F Substitution on Binding Affinity in Ligand-Antibody Interactions2005

    • Author(s)
      Minoru Saito, Isao Okazaki, Masayuki Oda, Ikuo Fujii, A
    • Journal Title

      J.Comput.Chem. 26

      Pages: 272-282

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Site-Directed Mutagenesis Study of the Antibody 2D7 which Catalyzes a Reaction for Insertion of Cu^<2+> into Mesoporphyrin2005

    • Author(s)
      Naoki Hosomi, Yasuko Kawamura-Konishi, Ryota Kawano Ikuo Fujii, Haruo Suzuki
    • Journal Title

      Journal of Bioscience and Bioengineering 99

      Pages: 222-229

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Backbone resonance assignments for the Fv fragment of catalytic antibody 6D9 complexed with a transition state analogue2005

    • Author(s)
      Masayuki Sakakura, Hideo Takahashi, Hiroaki Terasawa, Kou Takeuchi, Ikuo Fujii, Ichio Shimada
    • Journal Title

      J.Biomolecular NMR 33

      Pages: 282

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Comparison of two forms of catalytic antibody displayed on yeast-cell surface2004

    • Author(s)
      Yin Lin
    • Journal Title

      Journal of Molecular Catalysis B : Enzymatic 28

      Pages: 241-246

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Isolation of Novel catalytic antibody clones from combinatorial library displayed on yeast-cell surface2004

    • Author(s)
      Yin Lin
    • Journal Title

      Journal of Molecular Catalysis B : Enzymatic 28

      Pages: 247-251

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Phage-display selection of antibodies to the left end of CTX3Cusing synthetic fragments2004

    • Author(s)
      Yoko Nagumo
    • Journal Title

      Journal of Immunological Methods 289

      Pages: 137-146

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Directed evolution governed by controlling the molecular recognition between abzyme and haptenic transition-state analog2004

    • Author(s)
      Naoko Takahashi-Ando
    • Journal Title

      Journal of Immunological Methods 294

      Pages: 1-14

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] 生命化学のテーラーメイド・バイオケミストリー : 抗体酵素2004

    • Author(s)
      藤井郁雄
    • Journal Title

      化学と工業 57

      Pages: 487-490

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Comparison of two forms of catalytic antibody displayed on yeast-cell surface2004

    • Author(s)
      Ying Lin, Seizaburo Shiraga, Takeshi Tsumuraya, Takeshi Matsumoto, Akihiko Kondo, Ikuo Fujii, Mitsuyashi Ueda
    • Journal Title

      Journal of Molecular Catalysis B : Enzymatic 28

      Pages: 241-246

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Isolation of Novel catalytic antibody clones from combinatorial library displayed on yeast-cell surface2004

    • Author(s)
      Ying Lin, Seizaburo Shiraga, Takeshi Tsumuraya, Ikuo Fujii, Takeshi Matsumoto, Akihiko Kondo, Mitsuyashi Ueda
    • Journal Title

      Journal of Molecular Catalysis B : Enzymatic 28

      Pages: 247-251

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Phage-display selection of antibodies to the left end of CTX3Cusing synthetic fragments2004

    • Author(s)
      Yoko Nagumo, Hiroki Oguri, Kouhei Tsumoto, Yumi Shindo, Masahiro Hirama, Takeshi Tsumuraya, Ikuo Fujii, Yoshihisa Tomioka, Michinao Mizugakie, Izumi Kumagai
    • Journal Title

      Journal of Immunological Methods 289

      Pages: 137-146

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Directed evolution governed by controlling the molecular recognition between abzyme and haptenic transition-state analog2004

    • Author(s)
      Naoko Takahashi-Ando, Hiroyuki Kakinuma, Ikuo Fujii, Yoshisuke Nishi
    • Journal Title

      Journal of Immunological Methods 294

      Pages: 1-14

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Tailor-made biochemistry in biological chemistry : Catalytic Antibodies2004

    • Author(s)
      Ikuo Fujii
    • Journal Title

      Chemistry and Chemical Industry 57

      Pages: 487-490

    • Description
      「研究成果報告書概要(欧文)」より
  • [Patent(Industrial Property Rights)] シガトキシン類を認識するモノクローナル抗体、およびそれを用いるシガトキシン類検出キット2005

    • Inventor(s)
      藤井郁雄, 円谷健, 平間正博, 井上将行
    • Industrial Property Rights Holder
      大阪府
    • Industrial Property Number
      特願2005-8132
    • Filing Date
      2005-01-14
    • Description
      「研究成果報告書概要(和文)」より

URL: 

Published: 2008-05-27  

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