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2005 Fiscal Year Final Research Report Summary

Analysis of mechanism for nonpeptide antigen recognition by structural determination of mutated human γδ T cell receptor

Research Project

Project/Area Number 16590402
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Immunology
Research InstitutionKyoto University

Principal Investigator

TANAKA Yoshimasa  Kyoto University, Graduate School of Biostudies, Instructor, 生命科学研究科, 助手 (90280700)

Project Period (FY) 2004 – 2005
Keywordsγδ T cells / T cell receptor / Crystallization / Refolding / Cloning / Purification / X-ray / Expression
Research Abstract

In the present study, the extracellular domains of a human γδ T cell receptor were expressed in E.coli, refolded together, and crystallized, then the crystal structure was determined at a 2.2Å resolution. In practice, cDNAs encoding the extracellular domains of TCR γ- and δ-chains were separately cloned and incorporated into a T7-based expression vector. Since E.coli transfected with the original cDNA/vector failed to produce the recombinant proteins, the predicted step loop structure was removed on the basis of molecular dynamics caliculation. In addition, several codons were replaced by E.coli-favored ones and the E.coli codon index was increased up to 0.65. After the gene modification, the recombinant proteins could be produced in E.coli at 100 mg/l culture or more. The inclusion bodies were dissolved in guanidine solution, treated with DTT and refolded in an arginine-based buffer using a rapid dilution method. After dialysis, the protein sample was brought to pH 5.5 judging from pl and purified on cation-exchange column chromatography, followed by gel filtration. In screening for crystallization, commercial and in-house made kits were used. After 1 week, crystals appeared in several conditions containing PEG4000. After improvement of the conditions, the crystals were analyzed by the in-house X-ray generator, which gave a 3.0Å resolution. Then, the crystals were further analyzed by SPring 8. The data were processed on workstation and the following statistical values were obtained : space group ; P21, unit ; 60.82, 77.35, 100.12, 90.00, 95.00, and 90.00, reflection ; 314, 713, independent reflection ; 65, 401, resolution ; 1.9, completeness ; 91.4, redundancy ; 4.8, and refinement ; 15-1.90. As described above, crystal structure of human γδ T cell receptor was solved at a high resolution

  • Research Products

    (14 results)

All 2006 2005

All Journal Article (14 results)

  • [Journal Article] Involvement of CD166 in the activation of human γδ T cells by tumor cells sensitized with nonpeptide antigens2006

    • Author(s)
      Yu Kato, et al.
    • Journal Title

      The Journal of Immunology (In press)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Human γδ T cells and tumor immunity2006

    • Author(s)
      Yoshimasa Tanaka
    • Journal Title

      Journal of Clinical and Experimental Hematopathology 46

      Pages: 11-23

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Negative regulation of activation-induced cytidine deaminase in B cells2006

    • Author(s)
      Taro Muto, et al.
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America 130

      Pages: 2752-2757

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal structure and some properties of a major house dust mite allergen, Derf22006

    • Author(s)
      Masashi Suzuki, et al.
    • Journal Title

      Biochemical and Biophysical Research Communications 339

      Pages: 679-686

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Involvement of CD166 in the activation of human γδ T cells by tumor cells sensitized with nonpeptide antigens2006

    • Author(s)
      Yu Kato, Yoshimasa Tanaka, Mikihito Hayashi, Katsuya Okawa, Nagahiro Minato
    • Journal Title

      J.Immunol. (In press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Human γδ T cells and tumor immunotherapy2006

    • Author(s)
      Yoshimasa Tanaka
    • Journal Title

      J.Clin.Exp.Hematopathol. 46

      Pages: 11-23

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Negative regulation of activation-induced cytidine deaminase in B cells2006

    • Author(s)
      Taro Muto, II-mi Okazaki, Shuichi Yamada, Toshimasa Tanaka, Kazuo Kinoshita, Masamichi Muramatsu, Hitoshi Nagaoka, Tasuku Honjo
    • Journal Title

      Proc.Natl.Acd Sci.U.S.A. 130

      Pages: 2752-2757

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Crystal structure and some properties of a major house dust allergen, Derf 22006

    • Author(s)
      Masashi Suzuki, Yoshimasa Tanaka, Seigo Korematsu, Bunzo Mikami, Nagahiro Minato
    • Journal Title

      Biochem.Biophys.Res.Commun. 339

      Pages: 679-686

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Recognition and function of human γδ T cells : Application for tumor immunotherapy2005

    • Author(s)
      Yoshimasa Tanaka, et al.
    • Journal Title

      Current Immunology Reviews 1

      Pages: 275-285

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Enhanced expression of programmed death-1 (PD-1)/PD-L1 in salivary glands of patients with Sjogren's syndrome2005

    • Author(s)
      Masaya Kobayashi, et al.
    • Journal Title

      Journal of Rheumatology 32

      Pages: 2156-2163

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Analysis of mechanism for human γδ T cell recognition of nonpeptide antigens2005

    • Author(s)
      Seiji Yamashita, et al.
    • Journal Title

      Biochemical and Biophysical Research Communications 334

      Pages: 349-360

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Recognition and function of human γδ T cells : Application for tumor immunotherapy2005

    • Author(s)
      Yoshimasa Tanaka, Yu Kato, Shoichi Kita, Nagahiro Minato
    • Journal Title

      Cur.Immunol.Rev. 1

      Pages: 275-285

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Enhanced expression of programmed death-1(PD-1)/PD-L1 in salivary glands of patients with Sjogren's syndrome2005

    • Author(s)
      Masaya Kobayashi, Seiji Kawano, Saori Hatachi, Chiyo Kurimoto, Taku Okazaki, Yoshiko Iwai, Tasuku Honjo, Yoshimasa Tanaka, Nagahiro Minato, Takahide Komori, Saken Maeda, Shunichi Kumagai
    • Journal Title

      J.Rheumatol. 32

      Pages: 2156-2163

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Analysis of mechanism for human γδ T cell recognition of nonpeptide antigens2005

    • Author(s)
      Seiji Yamashita, Yoshimasa Tanaka, Shunichi Tsutsumi, Hiroyuki Aburatani, Nagahiro Minato, Sigeo Ihara
    • Journal Title

      Biochem.Biophys.Res.Commun. 334

      Pages: 349-360

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2007-12-13  

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